View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21373_high_15 (Length: 279)
Name: NF21373_high_15
Description: NF21373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21373_high_15 |
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Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 15 - 261
Target Start/End: Original strand, 30313805 - 30314051
Alignment:
| Q |
15 |
tatcgacttttggaatatcactccaaacctcacaccctctttcttccacaacacaatgatgcggactttatccttgcagtccttagtggtaattaatcat |
114 |
Q |
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| T |
30313805 |
tatcgacttttggaatatcactccaaacctcacaccctctttcttccacaacacaatgatgctgacttcattcttgcagtccttagtggtaattaatcat |
30313904 |
T |
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| Q |
115 |
ttatcaatttattaccttacaagttagtttcgtagttttatttgtatggatatataaaaatagcatttcttatcttacaagttagtttggtaataataag |
214 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
30313905 |
ttatcaatttattaccttacaagttagtttcatagttttatttgtatggatatataaaaatagcatttcttatcttacaagttagtttggtaagaataag |
30314004 |
T |
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| Q |
215 |
tttaaaataatatttaactttaattgtaatttgcagggaaagccata |
261 |
Q |
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| T |
30314005 |
tttaaaataatatttaactttaattgtaatttgcagggaaagccata |
30314051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 15 - 261
Target Start/End: Original strand, 30302941 - 30303182
Alignment:
| Q |
15 |
tatcgacttttggaatatcactccaaacctcacaccctctttcttccacaacacaatgatgcggactttatccttgcagtccttagtggtaattaatcat |
114 |
Q |
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| T |
30302941 |
tatcgccttttggaataccactccaaacctcacactctctttcttccacaacacaatgatgctgacttcatccttgcagtccttagtggtaattaatcat |
30303040 |
T |
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| Q |
115 |
ttatcaatttattaccttacaagttagtttcgtagttttatttgtatggatatataaaaatagcatttcttatcttacaagttagtttggtaataataag |
214 |
Q |
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| T |
30303041 |
ttatcaatttattaccttacaagttagtttcgtagttttatttgtat-----tataaaaatataatttcttatcttacaagttagttttgtaaaaataag |
30303135 |
T |
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| Q |
215 |
tttaaaataatatttaactttaattgtaatttgcagggaaagccata |
261 |
Q |
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| T |
30303136 |
tttaaaataatatttaactttaattttaatttgcagggaaagccata |
30303182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 21 - 239
Target Start/End: Original strand, 30290261 - 30290477
Alignment:
| Q |
21 |
cttttggaatatcactccaaacctcacaccctctttcttccacaacacaatgatgcggactttatccttgcagtccttagtggtaattaatcatttatca |
120 |
Q |
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| T |
30290261 |
cttttggaatatcactccaaacctcacaccctctttcttccacaacacaatgatgctgactttatccttgcagtgcttagtggtaattaaacatttatca |
30290360 |
T |
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| Q |
121 |
atttattaccttacaagttagtttcgtagttttatttgtatggatatataaaaatagcatttcttatcttacaagttagtttggtaataataagtttaaa |
220 |
Q |
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| T |
30290361 |
a-ttattaccttacaagttagtttcgaag-tttagttgtttgtatatataaaaatatcatttcttaccttacaagttagttttgtaggaataagtttaaa |
30290458 |
T |
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| Q |
221 |
ataatatttaactttaatt |
239 |
Q |
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|| |||||||||||||||| |
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| T |
30290459 |
attatatttaactttaatt |
30290477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 15 - 217
Target Start/End: Original strand, 30297755 - 30297957
Alignment:
| Q |
15 |
tatcgacttttggaatatcactccaaacctcacaccctctttcttccacaacacaatgatgcggactttatccttgcagtccttagtggtaattaatcat |
114 |
Q |
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||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||| |
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| T |
30297755 |
tatcgccttttggaatatcactccaaacctcacactctctttcttccacaacacaatgatgctgacttcatccttgcagtgcttagtggtaattaatcat |
30297854 |
T |
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| Q |
115 |
ttatcaatttattaccttacaagttagtttcgtagttttatttgtatggatatataaaaatagcatttcttatcttacaagttagtttggtaataataag |
214 |
Q |
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|||||||||||||| ||||||||||||||| |||||||||||||| || ||||||||||||| ||||||||||||||||||||| ||| |||| |||||| |
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| T |
30297855 |
ttatcaatttattatcttacaagttagttttgtagttttatttgtttgaatatataaaaatatcatttcttatcttacaagttacttttgtaagaataag |
30297954 |
T |
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| Q |
215 |
ttt |
217 |
Q |
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||| |
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| T |
30297955 |
ttt |
30297957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 18 - 116
Target Start/End: Original strand, 30285301 - 30285399
Alignment:
| Q |
18 |
cgacttttggaatatcactccaaacctcacaccctctttcttccacaacacaatgatgcggactttatccttgcagtccttagtggtaattaatcattt |
116 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||| |||| ||||||||||||||| |||| |
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| T |
30285301 |
cgactcttggaatatcactccaaacctcacaccctctttcttccacaacacaatgatgctgacttcattcttgtagtcgttagtggtaattaattattt |
30285399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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