View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21373_high_17 (Length: 253)
Name: NF21373_high_17
Description: NF21373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21373_high_17 |
 | |
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| [»] scaffold0019 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-119; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 2503908 - 2503673
Alignment:
| Q |
1 |
atgtttaagagca-gatatagcaacctatgagtcaaaaagtagcacaatatgaaacaagtttaaattaactaacagatgcaagagagtcaaaccatctag |
99 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
2503908 |
atgtttaagagcatgatacagcaacctatgagtcaaaaagtagcacaatatgaaacaagtttaaattaaccaacagatgcaagagagtcaaaccatctag |
2503809 |
T |
|
| Q |
100 |
caatactagaaactagcatttcaagaaggttaattaacattgaaagaaaaccctcttaaacaataagacaaaaaggattctaaaatctaagaaaatgaat |
199 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2503808 |
caatactagaaactagcatttcaagaaggttaattaacattgaaagaaaaccctcttaaacaataagacaaaaaggattctaaaatctaagaaaatgaat |
2503709 |
T |
|
| Q |
200 |
cttctactcctatctttgttgtctcgttccataatt |
235 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| |
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|
| T |
2503708 |
cttctattcctatctttgttgtctcgttccataatt |
2503673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 33 - 232
Target Start/End: Original strand, 2650294 - 2650490
Alignment:
| Q |
33 |
caaaaagtagcacaatatgaaacaagtttaaattaactaacagatgcaagagagtcaaaccatctagcaatactagaaactagcatttcaagaaggttaa |
132 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |
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|
| T |
2650294 |
caaaaagtagcatgatatgaaacaagtttaaattaaccaacatatgcaagagagtcaaaccatt--gcaatactagaaactagcatttctagaaggttaa |
2650391 |
T |
|
| Q |
133 |
ttaacattgaaagaaaaccctcttaaacaataagacaaaaaggattctaaaatctaagaaaatgaatcttctactcctatctttgttgtctcgttccata |
232 |
Q |
| |
|
||| |||||||||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2650392 |
ctaatattgaaagaaaacc-tgttaaacaataagaaaaaaaggattctaaaatctaagaaaatgaatcttctactcctatctttgttgtctcgttccata |
2650490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 49 - 196
Target Start/End: Original strand, 7340030 - 7340176
Alignment:
| Q |
49 |
atgaaacaagtttaaattaactaacagatgcaagagagtcaaaccatctagcaatactagaaactagcatttc-aagaaggttaattaacattgaaagaa |
147 |
Q |
| |
|
|||||||||||| || ||||| |||||| |||||||||||||| |||||||||||||| ||||||||||| | || ||||||| |||| |||||||||| |
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| T |
7340030 |
atgaaacaagttcaagttaaccaacagaggcaagagagtcaaatcatctagcaatact--aaactagcattgctaaaaaggttacttaatattgaaagaa |
7340127 |
T |
|
| Q |
148 |
aaccctcttaaacaataagacaaaaaggattctaaaatctaagaaaatg |
196 |
Q |
| |
|
|||| | ||| ||| ||| ||||| ||||||||||||||||||||| |
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|
| T |
7340128 |
aaccaaataaaagaatgagaaaaaaattattctaaaatctaagaaaatg |
7340176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 33 - 234
Target Start/End: Complemental strand, 2494494 - 2494294
Alignment:
| Q |
33 |
caaaaagtagcacaatatgaaacaagtttaaattaactaacagatgcaagagagtcaaaccatctagcaatactagaaactagcatttcaagaaggttaa |
132 |
Q |
| |
|
|||||| ||||| ||||||||||| | || ||||| |||| ||||||||| ||||| |||||||||||||||||||||| |||| |||||||||| |
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|
| T |
2494494 |
caaaaactagcatcatatgaaacaaagtcaagttaaccaacaaatgcaagag--tcaaatcatctagcaatactagaaactaccattgatagaaggttaa |
2494397 |
T |
|
| Q |
133 |
ttaacattgaaagaaaaccctct-taaacaataagacaaaaaggattctaaaatctaagaaaa-tgaatcttctactcctatctttgttgtctcgttcca |
230 |
Q |
| |
|
|||| |||||||||||||| | | ||||||| | | |||||||| ||||||||||||||||| ||||||| || ||||||||| || ||||||||| |
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| T |
2494396 |
ttaatattgaaagaaaaccttgtaaaaacaattata-aaaaaggactctaaaatctaagaaaagtgaatctattattcctatcttgtgtgcctcgttcca |
2494298 |
T |
|
| Q |
231 |
taat |
234 |
Q |
| |
|
|||| |
|
|
| T |
2494297 |
taat |
2494294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 160 - 232
Target Start/End: Original strand, 7332441 - 7332513
Alignment:
| Q |
160 |
caataagacaaaaaggattctaaaatctaagaaaatgaatcttctactcctatctttgttgtctcgttccata |
232 |
Q |
| |
|
|||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
7332441 |
caataagaaaaaaaggattcgaaaatctacgaaaatgaatcttctactcctatctttgtcttctcgttccata |
7332513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 49 - 196
Target Start/End: Complemental strand, 2484225 - 2484077
Alignment:
| Q |
49 |
atgaaacaagtttaaattaactaacagatgcaagagagtcaaaccatctagcaatactagaaactagcatttcaag-aaggttaattaacattgaaagaa |
147 |
Q |
| |
|
|||||||||||| | | ||| |||||| |||||| ||||||| |||||||||||||| ||||||||||| | || ||||||| |||| |||||||||| |
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|
| T |
2484225 |
atgaaacaagttccagtaaaccaacagaggcaagacagtcaaatcatctagcaatact--aaactagcattgctagaaaggttacttaatattgaaagaa |
2484128 |
T |
|
| Q |
148 |
aaccctcttaaacaat--aagacaaaaaggattctaaaatctaagaaaatg |
196 |
Q |
| |
|
|||| | ||| ||| ||| ||||| |||||||||||||||||||||| |
|
|
| T |
2484127 |
aacctaataaaagaatgagagaaaaaaatgattctaaaatctaagaaaatg |
2484077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 74 - 127
Target Start/End: Complemental strand, 2632301 - 2632248
Alignment:
| Q |
74 |
agatgcaagagagtcaaaccatctagcaatactagaaactagcatttcaagaag |
127 |
Q |
| |
|
|||||||||| ||||||| ||||| ||||| ||||||||||||||||| ||||| |
|
|
| T |
2632301 |
agatgcaagaaagtcaaatcatcttgcaattctagaaactagcatttctagaag |
2632248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 205
Target Start/End: Original strand, 7436807 - 7436854
Alignment:
| Q |
158 |
aacaataagacaaaaaggattctaaaatctaagaaaatgaatcttcta |
205 |
Q |
| |
|
|||||| ||| |||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
7436807 |
aacaatgagagaaaaaggattctaaaatccaagaaaatgaatattcta |
7436854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 150
Target Start/End: Complemental strand, 977 - 860
Alignment:
| Q |
33 |
caaaaagtagcacaatatgaaacaagtttaaattaactaacagatgcaagagagtcaaaccatctagcaatactagaaactagcatttcaagaaggttaa |
132 |
Q |
| |
|
|||||| ||||| |||||||||||||| || || || |||| | | |||| |||||| ||||||| || |||||||||||||||| | |||||||| |
|
|
| T |
977 |
caaaaactagcatcatatgaaacaagttcaagttcaccaacaaaggaaagatggtcaaatcatctagtaacactagaaactagcattgtcataaggttaa |
878 |
T |
|
| Q |
133 |
ttaacattgaaagaaaac |
150 |
Q |
| |
|
|||| ||||||||||||| |
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|
| T |
877 |
ttaatattgaaagaaaac |
860 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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