View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21373_high_6 (Length: 427)
Name: NF21373_high_6
Description: NF21373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21373_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 410
Target Start/End: Complemental strand, 42209344 - 42208921
Alignment:
| Q |
1 |
ttcctaagaggattacaaacatattttctttgaggggccatagagagtggctgaccattatttgttgtcggtagaggtctttcttactaatctcggttta |
100 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42209344 |
ttcctaagaggattacaaacatattttctttgaggtgccatagagagtggctgaccattatttgttgtcggtagaggtctttcttactaatctcggttta |
42209245 |
T |
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| Q |
101 |
gaagaatgagggtttaga------------agaatgaaaaggtgaagatgttcattggatactctcctgtaaaac---ccacaccagagaggatcctctt |
185 |
Q |
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| T |
42209244 |
gaagaatgagggtttagaggagggtttagaagaatgaaaaggtgaagatgttcattggatactctcctgtaaaacatcccacaccag-gaggatcctctt |
42209146 |
T |
|
| Q |
186 |
ctcatatataatcatatacctccttaaggagttttgaatcatttgtttgacaagtaatctctttcccgacatatatttttctatacgcatcggtcataga |
285 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
42209145 |
ctcatatataatcatatacctccttaaggagttttgaatcatttgtttgacaagtaatctctttcccgacatatatttttctatacgcatcggtcataaa |
42209046 |
T |
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| Q |
286 |
tcacttattgctttatttttaccttattctaatgaagcgagaggtgttacgnnnnnnnnnnnnnnnnnnnnnnnnctagattgcccttaaaattcatatt |
385 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
42209045 |
tcacttattgctttatttttaccttattctaatgaagcgagaggtgttacgttttttctttcttttgtggtttttctagattgcccttaaaattcatatt |
42208946 |
T |
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| Q |
386 |
caaagattgaattcaactccaattt |
410 |
Q |
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| T |
42208945 |
caaagattgaattcaactccaattt |
42208921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 369 - 420
Target Start/End: Complemental strand, 42215979 - 42215928
Alignment:
| Q |
369 |
cccttaaaattcatattcaaagattgaattcaactccaattttgtcttcttc |
420 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
42215979 |
cccttgaaattcatattcaaagattgaattcaactccaattttgttttcttc |
42215928 |
T |
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