View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21373_low_10 (Length: 404)

Name: NF21373_low_10
Description: NF21373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21373_low_10
NF21373_low_10
[»] chr1 (2 HSPs)
chr1 (123-365)||(34514598-34514830)
chr1 (133-365)||(34490843-34491081)
[»] chr5 (2 HSPs)
chr5 (84-117)||(35622810-35622843)
chr5 (85-117)||(35622958-35622990)
[»] chr4 (4 HSPs)
chr4 (84-117)||(28092739-28092772)
chr4 (85-117)||(28092887-28092919)
chr4 (85-117)||(36634542-36634574)
chr4 (85-117)||(54277666-54277698)
[»] chr3 (6 HSPs)
chr3 (84-117)||(42273328-42273361)
chr3 (84-117)||(46489651-46489684)
chr3 (84-117)||(46489799-46489832)
chr3 (85-117)||(6053746-6053778)
chr3 (85-117)||(34955068-34955100)
chr3 (85-117)||(53440541-53440573)
[»] chr6 (2 HSPs)
chr6 (85-117)||(12800391-12800423)
chr6 (85-117)||(29879392-29879424)
[»] chr2 (1 HSPs)
chr2 (85-117)||(37811086-37811118)


Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 123 - 365
Target Start/End: Original strand, 34514598 - 34514830
Alignment:
Q  123 agtggtgtccctgatttcacttttaattataaattgtcacatttttatcaaacaacgaagagacaattttgcgaaactgaatccaaattcaaattttaat 222  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34514598 agtggtgtccctgatttcatttttaattataaattgtcacatttttattaaacaacgaagagacaattttgcgaaactgaatccaaattcaaattttaat 34514697  T
Q  223 ttaaatgccatagttaattggatagttttagtttcaggcaatcaatattgtatcttttacatgtcgaatgttccatttgaatgagagttgtccacataat 322  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||     
T  34514698 ttaaatggcatagttaattggatagttttagtttcaggcaatcaatattgtatctt---------gaatgttccatttgaatgagagttgtccacataa- 34514787  T
Q  323 ttagtaaggttttgtcatggttttaagttgtggttacgattgt 365  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  34514788 ttagtaaggttttgtcatggttttaagttgtggttacgattgt 34514830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 133 - 365
Target Start/End: Original strand, 34490843 - 34491081
Alignment:
Q  133 ctgatttcacttttaattataaa-ttgtcacatttttatcaaacaacgaagagacaatttt-gcgaaactgaatccaaattcaaattttaatttaaatgc 230  Q
    ||||||||||||||||||||||| ||||||||||||| | ||||| | ||||||||||||| |||||||||||||||||||||||||||||| ||||||     
T  34490843 ctgatttcacttttaattataaaattgtcacattttttttaaacagcaaagagacaattttcgcgaaactgaatccaaattcaaattttaatataaatgg 34490942  T
Q  231 catagttaattggatagttttagtttcaggcaatcaatattgtatcttttacatgtcgaatgttccatttgaatgaga----gttgtccacataatttag 326  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||    ||||||||| ||| ||||    
T  34490943 catagttgattggatagttttagtttcaggcaatcaatattgtatcttttacacgtccagtgttccatttgaatgagatttggttgtccacgtaa-ttag 34491041  T
Q  327 taaggttt-tgtcatggttttaagttgtggttacgattgt 365  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  34491042 taaggtttctgtcatggttttaagttgtggttacgattgt 34491081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 117
Target Start/End: Original strand, 35622810 - 35622843
Alignment:
Q  84 gggacatcacttgtgtaccattgggataccaatg 117  Q
    |||||| |||||||||||||||||||||||||||    
T  35622810 gggacaccacttgtgtaccattgggataccaatg 35622843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 85 - 117
Target Start/End: Complemental strand, 35622990 - 35622958
Alignment:
Q  85 ggacatcacttgtgtaccattgggataccaatg 117  Q
    ||||| |||||||||||||||||||||||||||    
T  35622990 ggacaccacttgtgtaccattgggataccaatg 35622958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 117
Target Start/End: Original strand, 28092739 - 28092772
Alignment:
Q  84 gggacatcacttgtgtaccattgggataccaatg 117  Q
    |||||| |||||||||||||||||||||||||||    
T  28092739 gggacaccacttgtgtaccattgggataccaatg 28092772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 85 - 117
Target Start/End: Complemental strand, 28092919 - 28092887
Alignment:
Q  85 ggacatcacttgtgtaccattgggataccaatg 117  Q
    ||||| |||||||||||||||||||||||||||    
T  28092919 ggacaccacttgtgtaccattgggataccaatg 28092887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 85 - 117
Target Start/End: Complemental strand, 36634574 - 36634542
Alignment:
Q  85 ggacatcacttgtgtaccattgggataccaatg 117  Q
    ||||| |||||||||||||||||||||||||||    
T  36634574 ggacaccacttgtgtaccattgggataccaatg 36634542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 85 - 117
Target Start/End: Complemental strand, 54277698 - 54277666
Alignment:
Q  85 ggacatcacttgtgtaccattgggataccaatg 117  Q
    ||||| |||||||||||||||||||||||||||    
T  54277698 ggacaccacttgtgtaccattgggataccaatg 54277666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 117
Target Start/End: Original strand, 42273328 - 42273361
Alignment:
Q  84 gggacatcacttgtgtaccattgggataccaatg 117  Q
    |||||| |||||||||||||||||||||||||||    
T  42273328 gggacaccacttgtgtaccattgggataccaatg 42273361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 117
Target Start/End: Original strand, 46489651 - 46489684
Alignment:
Q  84 gggacatcacttgtgtaccattgggataccaatg 117  Q
    |||||| |||||||||||||||||||||||||||    
T  46489651 gggacaccacttgtgtaccattgggataccaatg 46489684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 117
Target Start/End: Complemental strand, 46489832 - 46489799
Alignment:
Q  84 gggacatcacttgtgtaccattgggataccaatg 117  Q
    |||||| |||||||||||||||||||||||||||    
T  46489832 gggacaccacttgtgtaccattgggataccaatg 46489799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 85 - 117
Target Start/End: Complemental strand, 6053778 - 6053746
Alignment:
Q  85 ggacatcacttgtgtaccattgggataccaatg 117  Q
    ||||| |||||||||||||||||||||||||||    
T  6053778 ggacaccacttgtgtaccattgggataccaatg 6053746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 85 - 117
Target Start/End: Original strand, 34955068 - 34955100
Alignment:
Q  85 ggacatcacttgtgtaccattgggataccaatg 117  Q
    ||||| |||||||||||||||||||||||||||    
T  34955068 ggacaccacttgtgtaccattgggataccaatg 34955100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 85 - 117
Target Start/End: Original strand, 53440541 - 53440573
Alignment:
Q  85 ggacatcacttgtgtaccattgggataccaatg 117  Q
    ||||| |||||||||||||||||||||||||||    
T  53440541 ggacaccacttgtgtaccattgggataccaatg 53440573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 85 - 117
Target Start/End: Complemental strand, 12800423 - 12800391
Alignment:
Q  85 ggacatcacttgtgtaccattgggataccaatg 117  Q
    ||||| |||||||||||||||||||||||||||    
T  12800423 ggacaccacttgtgtaccattgggataccaatg 12800391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 85 - 117
Target Start/End: Complemental strand, 29879424 - 29879392
Alignment:
Q  85 ggacatcacttgtgtaccattgggataccaatg 117  Q
    ||||| |||||||||||||||||||||||||||    
T  29879424 ggacaccacttgtgtaccattgggataccaatg 29879392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 85 - 117
Target Start/End: Original strand, 37811086 - 37811118
Alignment:
Q  85 ggacatcacttgtgtaccattgggataccaatg 117  Q
    ||||| |||||||||||||||||||||||||||    
T  37811086 ggacaccacttgtgtaccattgggataccaatg 37811118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University