View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21373_low_12 (Length: 398)

Name: NF21373_low_12
Description: NF21373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21373_low_12
NF21373_low_12
[»] chr5 (10 HSPs)
chr5 (97-308)||(1601111-1601322)
chr5 (19-189)||(8527660-8527827)
chr5 (302-398)||(1600998-1601094)
chr5 (314-398)||(8640716-8640800)
chr5 (317-398)||(8528171-8528252)
chr5 (317-398)||(8534736-8534817)
chr5 (103-174)||(15618505-15618576)
chr5 (332-398)||(9002585-9002651)
chr5 (178-291)||(8528025-8528137)
chr5 (190-254)||(8534601-8534665)
[»] chr7 (4 HSPs)
chr7 (97-189)||(48362867-48362959)
chr7 (314-398)||(48362472-48362556)
chr7 (243-308)||(48362573-48362638)
chr7 (114-189)||(35777257-35777332)
[»] chr4 (3 HSPs)
chr4 (132-189)||(9441937-9441994)
chr4 (317-398)||(9442332-9442413)
chr4 (178-254)||(9442192-9442268)
[»] chr1 (2 HSPs)
chr1 (178-254)||(26324390-26324466)
chr1 (149-189)||(26325040-26325080)


Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 97 - 308
Target Start/End: Complemental strand, 1601322 - 1601111
Alignment:
Q  97 aaaatcacaactagccaaatcataacttgtgatttaacataaccatgcctagtgtatggaaattccttcttatcagctgtactcttcaccaaattcttca 196  Q
    |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1601322 aaaatcgcaactagccaaatcataacttgtgatttaacataaccctgcctagtgtatggaaattccttcttatcagctgtactcttcaccaaattcttca 1601223  T
Q  197 ccatcagacgaggatgaagataaatttttcaagtcaccaaaagatgatggaaaacatgtagtttctaagtcttaaacagtcagttgagacagagatagac 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1601222 ccatcagacgaggatgaagataaatttttcaagtcaccaaaagatgatggaaaacatgtagtttctaagtcttaaacagtcagttgagacagagatagac 1601123  T
Q  297 cttccgtttctt 308  Q
    ||||||||||||    
T  1601122 cttccgtttctt 1601111  T

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Target: chr5; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 19 - 189
Target Start/End: Original strand, 8527660 - 8527827
Alignment:
Q  19 taatgaacatctagattaaattttacnnnnnnnnngacatcatttgcatcttaaaatgagatttgtannnnnnnnnncaaaatcacaactagccaaatca 118  Q
    ||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||          |||||||||||||||||||||||    
T  8527660 taatgaacatctagattaaattttacaaaaaaa--gacatcatttgcatcttaaaatgagatttgtagtttttttt-caaaatcacaactagccaaatca 8527756  T
Q  119 taacttgtgatttaacataaccatgcctagtgtatggaaattccttcttatcagctgtactcttcaccaaa 189  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  8527757 taacttgtgatttaacataaccctgcctagtgtatggaaattccttcttatcagctgtactcttcaccaaa 8527827  T

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Target: chr5; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 302 - 398
Target Start/End: Original strand, 1600998 - 1601094
Alignment:
Q  302 gtttcttaagtgtattccatcccctgcaatttgaagttttagctaatattacttaaccattattcccaaatattgttttaatttatataggtgtgca 398  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1600998 gtttcttaagtgtattccatcccctgcaatttgcagttttagctaatattacttaaccattattcccaaatattgttttaatttatataggtgtgca 1601094  T

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Target: chr5; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 314 - 398
Target Start/End: Complemental strand, 8640800 - 8640716
Alignment:
Q  314 tattccatcccctgcaatttgaagttttagctaatattacttaaccattattcccaaatattgttttaatttatataggtgtgca 398  Q
    |||||||||| |||||||||  ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  8640800 tattccatcctctgcaattttcagttttagctaatattacttaaccattgttccctaatattgttttaatttatataggtgtgca 8640716  T

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Target: chr5; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 317 - 398
Target Start/End: Complemental strand, 8528252 - 8528171
Alignment:
Q  317 tccatcccctgcaatttgaagttttagctaatattacttaaccattattcccaaatattgttttaatttatataggtgtgca 398  Q
    |||||||||||||||||| ||||||||||| ||||||||||||| ||||||| |||||||||||||||| ||||||||||||    
T  8528252 tccatcccctgcaatttgcagttttagctactattacttaaccaatattccccaatattgttttaatttctataggtgtgca 8528171  T

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Target: chr5; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 317 - 398
Target Start/End: Complemental strand, 8534817 - 8534736
Alignment:
Q  317 tccatcccctgcaatttgaagttttagctaatattacttaaccattattcccaaatattgttttaatttatataggtgtgca 398  Q
    ||||||||||| |||||| ||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  8534817 tccatcccctgtaatttgcagttttagctactattacttaaccaatattccccaatattgttttaatttatataggtgtgca 8534736  T

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Target: chr5; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 103 - 174
Target Start/End: Original strand, 15618505 - 15618576
Alignment:
Q  103 acaactagccaaatcataacttgtgatttaacataaccatgcctagtgtatggaaattccttcttatcagct 174  Q
    |||||||||||||| ||||||||||||||||||||||| || |||||||||| |||||| ||||||| ||||    
T  15618505 acaactagccaaatgataacttgtgatttaacataaccctgtctagtgtatgtaaattctttcttattagct 15618576  T

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Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 332 - 398
Target Start/End: Complemental strand, 9002651 - 9002585
Alignment:
Q  332 ttgaagttttagctaatattacttaaccattattcccaaatattgttttaatttatataggtgtgca 398  Q
    ||||||||||||||||||||| |||||| || ||||  ||||||||| |||||||||||||||||||    
T  9002651 ttgaagttttagctaatattatttaaccgttgttcctgaatattgttgtaatttatataggtgtgca 9002585  T

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Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 178 - 291
Target Start/End: Original strand, 8528025 - 8528137
Alignment:
Q  178 ctcttcaccaaattcttcaccatcagacgaggatgaagataaatttttcaagtcaccaaaagatgatggaaaacatgtagtttctaagtcttaaacagtc 277  Q
    |||||| ||||| ||||||||||||||  |||| ||||||| |||| ||||||||| | ||||||||| ||| |||| | |||| |||||| ||||| ||    
T  8528025 ctcttcgccaaactcttcaccatcagataaggaggaagatatatttatcaagtcactataagatgatgaaaagcatgaactttc-aagtctcaaacaatc 8528123  T
Q  278 agttgagacagaga 291  Q
     |||||||||||||    
T  8528124 tgttgagacagaga 8528137  T

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Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 254
Target Start/End: Original strand, 8534601 - 8534665
Alignment:
Q  190 ttcttcaccatcagacgaggatgaagataaatttttcaagtcaccaaaagatgatggaaaacatg 254  Q
    |||||||||||||||  |||| | ||||| |||| ||||||||||| ||||||||| ||||||||    
T  8534601 ttcttcaccatcagataaggaggcagatatatttatcaagtcaccataagatgatgaaaaacatg 8534665  T

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Target: chr7 (Bit Score: 77; Significance: 1e-35; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 97 - 189
Target Start/End: Complemental strand, 48362959 - 48362867
Alignment:
Q  97 aaaatcacaactagccaaatcataacttgtgatttaacataaccatgcctagtgtatggaaattccttcttatcagctgtactcttcaccaaa 189  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||||| ||||||||||||||||    
T  48362959 aaaatcacaactagccaaatcataacttgtgatttaacataaccctgcccagtgtatggaaattccctcttatcagttgtactcttcaccaaa 48362867  T

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Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 314 - 398
Target Start/End: Original strand, 48362472 - 48362556
Alignment:
Q  314 tattccatcccctgcaatttgaagttttagctaatattacttaaccattattcccaaatattgttttaatttatataggtgtgca 398  Q
    |||||||||| |||||||||| ||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||    
T  48362472 tattccatcctctgcaatttgcagttttagctaatattacttaaccattattcctgaatattggtttaatttatataggtgtgca 48362556  T

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Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 243 - 308
Target Start/End: Complemental strand, 48362638 - 48362573
Alignment:
Q  243 atggaaaacatgtagtttctaagtcttaaacagtcagttgagacagagatagaccttccgtttctt 308  Q
    |||||||||||||||||||||||||| ||||| || ||||||||||||||| ||||||| ||||||    
T  48362638 atggaaaacatgtagtttctaagtctcaaacaatctgttgagacagagatataccttccttttctt 48362573  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 114 - 189
Target Start/End: Original strand, 35777257 - 35777332
Alignment:
Q  114 aatcataacttgtgatttaacataaccatgcctagtgtatggaaattccttcttatcagctgtactcttcaccaaa 189  Q
    |||||||| |||||||||| |||| ||||||||| |||||||||||| |||| ||  || |||||||||| |||||    
T  35777257 aatcataaattgtgatttagcatagccatgcctactgtatggaaattacttcataatagttgtactcttcgccaaa 35777332  T

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Target: chr4 (Bit Score: 54; Significance: 7e-22; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 132 - 189
Target Start/End: Original strand, 9441937 - 9441994
Alignment:
Q  132 aacataaccatgcctagtgtatggaaattccttcttatcagctgtactcttcaccaaa 189  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  9441937 aacataaccctgcctagtgtatggaaattccttcttatcagctgtactcttcaccaaa 9441994  T

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Target: chr4; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 317 - 398
Target Start/End: Complemental strand, 9442413 - 9442332
Alignment:
Q  317 tccatcccctgcaatttgaagttttagctaatattacttaaccattattcccaaatattgttttaatttatataggtgtgca 398  Q
    |||||||||||||||||| ||||||||||| ||||| ||||||| ||||||  |||||||||||||||| ||||||||||||    
T  9442413 tccatcccctgcaatttgcagttttagctactattaattaaccaatattcctcaatattgttttaatttctataggtgtgca 9442332  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 178 - 254
Target Start/End: Original strand, 9442192 - 9442268
Alignment:
Q  178 ctcttcaccaaattcttcaccatcagacgaggatgaagataaatttttcaagtcaccaaaagatgatggaaaacatg 254  Q
    |||||||||||| ||||||||||||||  |||| ||||||| |||| ||||||||| | ||||||||| ||| ||||    
T  9442192 ctcttcaccaaactcttcaccatcagataaggaggaagatatatttatcaagtcactataagatgatgaaaagcatg 9442268  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 178 - 254
Target Start/End: Complemental strand, 26324466 - 26324390
Alignment:
Q  178 ctcttcaccaaattcttcaccatcagacgaggatgaagataaatttttcaagtcaccaaaagatgatggaaaacatg 254  Q
    |||||||||||| ||||||||||||||  |||| ||||||| |||| ||||||||||| ||||||||| ||| ||||    
T  26324466 ctcttcaccaaactcttcaccatcagataaggaggaagatatatttatcaagtcaccataagatgatgaaaagcatg 26324390  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 189
Target Start/End: Complemental strand, 26325080 - 26325040
Alignment:
Q  149 tgtatggaaattccttcttatcagctgtactcttcaccaaa 189  Q
    |||||||||||||||||| ||||| ||||||||||||||||    
T  26325080 tgtatggaaattccttctaatcagttgtactcttcaccaaa 26325040  T

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