View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21373_low_18 (Length: 256)
Name: NF21373_low_18
Description: NF21373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21373_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 85 - 251
Target Start/End: Complemental strand, 20131436 - 20131270
Alignment:
| Q |
85 |
aagaaaaatatgaatgtannnnnnnncttgtatatttatttcattgaaatggtagtcacatagtaatattaaaggaatccatgtgagaaggttagaacgg |
184 |
Q |
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| T |
20131436 |
aagaaaaatatgaatgtattttttttcttgtatatttatttcattgaaatggtagtcacatagtaatattaaaggaatccatgtgagaaggttagaacgg |
20131337 |
T |
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| Q |
185 |
ggcaacgggcagtagaaggatgggcgtggcaaggacatcaatgcatatgcagtttcccccctatgct |
251 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |
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| T |
20131336 |
ggcaacgggcagtagaaggatgggcgtggctaggacatcaatgcatatgcagtttccccccaatgct |
20131270 |
T |
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Target: chr7 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 85 - 251
Target Start/End: Original strand, 44360633 - 44360799
Alignment:
| Q |
85 |
aagaaaaatatgaatgtannnnnnnncttgtatatttatttcattgaaatggtagtcacatagtaatattaaaggaatccatgtgagaaggttagaacgg |
184 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44360633 |
aagaaaaatatgaatgtattttttttcttgtatatttatttcattgaaatggtagtcacatagtaatattaaaggaatccatgtgagaaggttagaacgg |
44360732 |
T |
|
| Q |
185 |
ggcaacgggcagtagaaggatgggcgtggcaaggacatcaatgcatatgcagtttcccccctatgct |
251 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |
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| T |
44360733 |
ggcaacgggcagtagaaggatgggcgtggctaggacatcaatgcatatgcagtttccccccaatgct |
44360799 |
T |
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