View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21373_low_20 (Length: 238)
Name: NF21373_low_20
Description: NF21373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21373_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 179; Significance: 1e-96; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 19199767 - 19199980
Alignment:
| Q |
1 |
tcatttgagttcataaaattctccattctactgggagggttttattctcaggttttccttctatcacttatatgggtttgttatttgtggggccatcatt |
100 |
Q |
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| T |
19199767 |
tcatttgagttcataaaattctccattctactgggagggttttattctcaggttttccttctatcacttatatgggtttgttatttgtggggccatcata |
19199866 |
T |
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| Q |
101 |
tgaaggagaacaagcaaggttaaatatactttgcatatggtaactggtttggatctcttgtgccttttggagaaag--ataggtattcttttcttcattg |
198 |
Q |
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|| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |
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| T |
19199867 |
tggaggagaacaagcaaggtcaaatatactttgcatatggtcactggtttggatctcttgtgccttttggagaaagatataggtattcttttcttcgttg |
19199966 |
T |
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| Q |
199 |
cagacttaacttta |
212 |
Q |
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||||||||| |||| |
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| T |
19199967 |
cagacttaatttta |
19199980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 73 - 218
Target Start/End: Original strand, 19203598 - 19203744
Alignment:
| Q |
73 |
tgggtttgttatttgtggggccatcatttgaaggagaacaagcaaggttaaatatactttgcatatggtaactggtttggatctcttgtgccttttggag |
172 |
Q |
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||||||||||||||||||||||||||| || |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
19203598 |
tgggtttgttatttgtggggccatcatatggaggagaacaagcaaggttgaatatactttgcata-ggtaactggtttggatctcttgtgccttttggag |
19203696 |
T |
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| Q |
173 |
aaag--ataggtattcttttcttcattgcagacttaactttatacatt |
218 |
Q |
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|||| |||||||||||||||||| ||||||||||||||||||||||| |
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| T |
19203697 |
aaagatataggtattcttttcttcgttgcagacttaactttatacatt |
19203744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 74
Target Start/End: Original strand, 19203464 - 19203523
Alignment:
| Q |
16 |
aaattctccattctactgggagggttttattctcaggttttccttc--tatcacttatatg |
74 |
Q |
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||||||||||||||||||| |||| |||||||||||||||| |||| ||||||||||||| |
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| T |
19203464 |
aaattctccattctactggtaggg-tttattctcaggtttttcttctatatcacttatatg |
19203523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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