View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21373_low_22 (Length: 228)
Name: NF21373_low_22
Description: NF21373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21373_low_22 |
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| [»] scaffold0442 (1 HSPs) |
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| [»] scaffold0320 (1 HSPs) |
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Alignment Details
Target: scaffold0442 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: scaffold0442
Description:
Target: scaffold0442; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 16 - 210
Target Start/End: Original strand, 12326 - 12520
Alignment:
| Q |
16 |
cactctcaatgtccacaaaagaaagagaaatatattaaattaaaaggatggaatgaatctctttcattgttggcttactgatggatgtactaggttgtgt |
115 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |
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| T |
12326 |
cactctcaatgtccacaaaagaaagagatatatattaaattaaaaggatggaatgaatctctttacatgttggcttactgatggatgtactgggttgtgt |
12425 |
T |
|
| Q |
116 |
gcagctttcctttcgacgttttatagcgtagactcgtcataggtgtaaggtaccctggcggtggagtgtcaagtgtggcatgctttattacattc |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
12426 |
gcagctttcctttcgacgttttatagcgtagactcgtcataggtgtaaggtaccctggcggctgagtgtcaagtgtggcatgctttattacattc |
12520 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 16 - 210
Target Start/End: Complemental strand, 8212430 - 8212236
Alignment:
| Q |
16 |
cactctcaatgtccacaaaagaaagagaaatatattaaattaaaaggatggaatgaatctctttcattgttggcttactgatggatgtactaggttgtgt |
115 |
Q |
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||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| | |||||||| |
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| T |
8212430 |
cactctcaatgtccataaaagaaagagaaatatattaaatttaaaggatggaatgaatctctttccatgttggcttactgatggatgtattgggttgtgt |
8212331 |
T |
|
| Q |
116 |
gcagctttcctttcgacgttttatagcgtagactcgtcataggtgtaaggtaccctggcggtggagtgtcaagtgtggcatgctttattacattc |
210 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8212330 |
gcagctttcctttcgatgttttatagcgtagactcgtcataggtgtaaggtaccctggcggtggagtgtcaagtgtggcatgctttattacattc |
8212236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 16 - 210
Target Start/End: Complemental strand, 9290691 - 9290497
Alignment:
| Q |
16 |
cactctcaatgtccacaaaagaaagagaaatatattaaattaaaaggatggaatgaatctctttcattgttggcttactgatggatgtactaggttgtgt |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||| |||||||| |
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| T |
9290691 |
cactctcaatgtccacaaaagaaagagaaatatattaatttaaaaggatggaatgaatctctttccatgttggcttactaatggatgtactgggttgtgt |
9290592 |
T |
|
| Q |
116 |
gcagctttcctttcgacgttttatagcgtagactcgtcataggtgtaaggtaccctggcggtggagtgtcaagtgtggcatgctttattacattc |
210 |
Q |
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|||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
9290591 |
gcagctttcctttcaacgttttatagtgtagactcgtcaatggtgtaaggtaccctggcggtggagtgtcaagtgtggcatgccttattacattc |
9290497 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 16 - 210
Target Start/End: Original strand, 7054483 - 7054677
Alignment:
| Q |
16 |
cactctcaatgtccacaaaagaaagagaaatatattaaattaaaaggatggaatgaatctctttcattgttggcttactgatggatgtactaggttgtgt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||| |
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| T |
7054483 |
cactctcaatgtccacaaaagaaagagaaatatattaaattaaaaggatggaatgaatctcttttcatgttggcttactgatggatgtgatgggttgtgt |
7054582 |
T |
|
| Q |
116 |
gcagctttcctttcgacgttttatagcgtagactcgtcataggtgtaaggtaccctggcggtggagtgtcaagtgtggcatgctttattacattc |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
7054583 |
gcagctttcctttcgacgttttatagcgtagactcgtcataggtgtaaggtaccctggcggcggagtgtcaagtgtggcatgctttattacattc |
7054677 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 152 - 210
Target Start/End: Original strand, 14462442 - 14462500
Alignment:
| Q |
152 |
tcataggtgtaaggtaccctggcggtggagtgtcaagtgtggcatgctttattacattc |
210 |
Q |
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||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||| |
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| T |
14462442 |
tcataggtgtaaggtaccctggcggcggagtgtcaggtgtggcatgcttgattacattc |
14462500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0320 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: scaffold0320
Description:
Target: scaffold0320; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 16 - 206
Target Start/End: Complemental strand, 13653 - 13464
Alignment:
| Q |
16 |
cactctcaatgtccacaaaagaaagagaaatatattaaattaaaaggatggaatgaatctctttcattgttggcttactgatggatgtactaggttgtgt |
115 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||| |
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| T |
13653 |
cactctcaatgtccacaaaagaaagagaaatatattaaattaaaaggatg-aatgaatctctttccatgttggcttactgatggatgtactgggttgtgt |
13555 |
T |
|
| Q |
116 |
gcagctttcctttcgacgttttatagcgtagactcgtcataggtgtaaggtaccctggcggtggagtgtcaagtgtggcatgctttattac |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
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| T |
13554 |
gcagctttcctttcgacgttttatagcgtagactcgtcataggtgtaaggtaccctggtggcggagtgtcaagtgtggcatgctttattac |
13464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 16 - 210
Target Start/End: Complemental strand, 38980997 - 38980803
Alignment:
| Q |
16 |
cactctcaatgtccacaaaagaaagagaaatatattaaattaaaaggatggaatgaatctctttcattgttggcttactgatggatgtactaggttgtgt |
115 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
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| T |
38980997 |
cactctcaatgtcaacaaaagaaagagaaatatattaaattaaaaggatggaatgaatctctttccacgttggcttactgatggatgtactgggttgtgt |
38980898 |
T |
|
| Q |
116 |
gcagctttcctttcgacgttttatagcgtagactcgtcataggtgtaaggtaccctggcggtggagtgtcaagtgtggcatgctttattacattc |
210 |
Q |
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|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
38980897 |
gcagttttcctttcgacattttatagcgtagactcgtcataggtgtaaggtaccctggcggcggagtgtcaagtgtggcatgctttattacattc |
38980803 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 16 - 210
Target Start/End: Complemental strand, 51424883 - 51424689
Alignment:
| Q |
16 |
cactctcaatgtccacaaaagaaagagaaatatattaaattaaaa-ggatggaatgaatctcttt-cattgttggcttactgatggatgtactaggttgt |
113 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||| | |||||||||||||||||||||||| |||||| |
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|
| T |
51424883 |
cactctcaatgtccacaaaagaaatagaaatat--taaattaaaaaggatggaatgaatctcttttccatgttggcttactgatggatgtactgggttgt |
51424786 |
T |
|
| Q |
114 |
gtgcagctttcctttcgacgttttatagcgtagactcgtcataggtgtaaggtaccctggcggtggagtgtcaagtgtggcatgctttattacattc |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
51424785 |
gtgcagctttcctttcgacgttttatagcgtagactcgtcataggtgtaaggtaccctggcggtggagtgtcaagtgtgacatgctttattacattc |
51424689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 156 - 210
Target Start/End: Complemental strand, 11686712 - 11686658
Alignment:
| Q |
156 |
aggtgtaaggtaccctggcggtggagtgtcaagtgtggcatgctttattacattc |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11686712 |
aggtgtaaggtaccctggcggtggagtgtcaagtgtggcatgctttattacattc |
11686658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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