View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21373_low_24 (Length: 209)
Name: NF21373_low_24
Description: NF21373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21373_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 154; Significance: 7e-82; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 14 - 198
Target Start/End: Complemental strand, 10397565 - 10397387
Alignment:
| Q |
14 |
tgattcattttgttgtgatatgtcaagtctcaagtgtaagttaaagtcttacattgatcggaggggttgaggttgaacaacatataagtgagaggatcaa |
113 |
Q |
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| T |
10397565 |
tgattcattttgttgtgatatgtcaagtctcaagtgtaagttaaagtcttacattgatcggaggggttgaggttgaacaacatataagtgagaggaccaa |
10397466 |
T |
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| Q |
114 |
taaatttaatgttttaaggtttttggcgatgatatggtgttcaacacatttagttaggtggttgctattagcttaatgtgatgat |
198 |
Q |
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| T |
10397465 |
------taatgttttaaggtttttggtgatgatatggtgttcaacacatttagttaggtggttgctattagcttaatgtgatgat |
10397387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 31
Target Start/End: Complemental strand, 10397596 - 10397567
Alignment:
| Q |
2 |
tctcttgatgaatgattcattttgttgtga |
31 |
Q |
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| T |
10397596 |
tctcttgatgaatgattcattttgttgtga |
10397567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 153
Target Start/End: Complemental strand, 24181798 - 24181731
Alignment:
| Q |
86 |
ttgaacaacatataagtgagaggatcaataaatttaatgttttaaggtttttggcgatgatatggtgt |
153 |
Q |
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| T |
24181798 |
ttgaaaaacatataagtgagatgatcaatatacataatgctttaaggttttgggtgatgatatggtgt |
24181731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 83 - 118
Target Start/End: Complemental strand, 37660923 - 37660888
Alignment:
| Q |
83 |
aggttgaacaacatataagtgagaggatcaataaat |
118 |
Q |
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| T |
37660923 |
aggttgaacaacatataagtgagaggaccaataaat |
37660888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 136
Target Start/End: Original strand, 12454009 - 12454066
Alignment:
| Q |
79 |
gttgaggttgaacaacatataagtgagaggatcaataaatttaatgttttaaggtttt |
136 |
Q |
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| T |
12454009 |
gttgaagttgaacaacatataagtgagatgacccataaatctaatgttttaagttttt |
12454066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 86 - 153
Target Start/End: Original strand, 16853674 - 16853741
Alignment:
| Q |
86 |
ttgaacaacatataagtgagaggatcaataaatttaatgttttaaggtttttggcgatgatatggtgt |
153 |
Q |
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| T |
16853674 |
ttgaaaaacatataagtgagatgatcaatatacataatgctttaaggttttgggtgatgatgtggtgt |
16853741 |
T |
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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 136
Target Start/End: Original strand, 20117191 - 20117249
Alignment:
| Q |
78 |
ggttgaggttgaacaacatataagtgagaggatcaataaatttaatgttttaaggtttt |
136 |
Q |
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|||||| ||||||||||||||||||||||| | ||||||| ||||| |||||||||| |
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| T |
20117191 |
ggttgaagttgaacaacatataagtgagagtactcataaattcaatgtcttaaggtttt |
20117249 |
T |
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