View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21373_low_25 (Length: 204)
Name: NF21373_low_25
Description: NF21373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21373_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 8266952 - 8266799
Alignment:
| Q |
1 |
agaacaagaaaattgaattgaggaaagagatggaagagagatgaaattaggtgt-gtgttggaatggagttggaagagggagacagaagtgtgaccacta |
99 |
Q |
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| T |
8266952 |
agaacaagaaaattgaattgaggaaagacatggaagagagatgaaattaggtgttgtgttggaatggagttggaagagggagacagaagtgtgaccacta |
8266853 |
T |
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| Q |
100 |
attctattctcaaaaattcaactaaagttttttgatataatttgtggtggtgaa |
153 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8266852 |
attctattctcaaaaattcaactaaagttttttgatataatttgtggtggtgaa |
8266799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 15925982 - 15926133
Alignment:
| Q |
1 |
agaacaagaaaattgaattgaggaaagagatggaagagagatgaaattaggtgtg-tgttggaatggagttggaagagggagacagaagtgtgaccacta |
99 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||| ||||||||||||||| |
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| T |
15925982 |
agaataagaaaattgaattgaggaaagagatggaagagagatgaaattaggtgttatgtt---atggagttggaagagagagaccgaagtgtgaccacta |
15926078 |
T |
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| Q |
100 |
attctattctcaaaaattcaactaaag-ttttttgatataatttgtggtggtgaa |
153 |
Q |
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|||||||||| |||| |||||||||| ||||||||||||||||||| ||||||| |
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| T |
15926079 |
attctattctagaaaactcaactaaagtttttttgatataatttgtgctggtgaa |
15926133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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