View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21373_low_4 (Length: 491)
Name: NF21373_low_4
Description: NF21373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21373_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 19 - 472
Target Start/End: Complemental strand, 47744280 - 47743827
Alignment:
| Q |
19 |
gaacaggtgaagatgaagaaggcatggctctcgaagtttatctgtcctgatttcaaattttcaatataaaaagcatgtttgtatgtcagctaatcacact |
118 |
Q |
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| T |
47744280 |
gaacaggtgaagatgaagaaggcatggctctcgaagtttatctgtcctgatttcaaattttcaatataaaaagcatgtttgtatgtcagctaatcacact |
47744181 |
T |
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| Q |
119 |
aataacaaattatcttgactgccaacataaataaccctgttgctcacaagttaaaacnnnnnnncaactagtnnnnnnnttaaacttgttgtgtcattaa |
218 |
Q |
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| T |
47744180 |
aataacaaattatcttgactgccaacataaataaccctgttgctcacaagtttaaactttttttcaactagaaaaaaaattaaacttgttgtgtcattaa |
47744081 |
T |
|
| Q |
219 |
aaaagcactagaaaacatatagaagtcatttgagaaagtattcaactaccctaagaatacatcacaatattcacaaatatccttgaaagaatgggaaaat |
318 |
Q |
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| T |
47744080 |
aa--gcactagaaaacatatagaagtcatttgagaaagtattcaactaccctaagaatacatcacaatattcacaaatatccttgaaagaatgggaaaat |
47743983 |
T |
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| Q |
319 |
atttaaaattacaagcttaagaaaataatctaaccaacactaattcatgaaaaatgtgattagaagttagaac--cagtttctacaatatgtatgtatgc |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
47743982 |
atttaaaattacaagcttaagaaaataatctaaccaacactaattcatgaaaaatgtgattagaagttagaaccacagtttctacaatatgtatgtatgc |
47743883 |
T |
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| Q |
417 |
aataccaaataacgtgatgcaactacaagcacaatggaaatttaaaaccttgatct |
472 |
Q |
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| T |
47743882 |
aataccaaataacgtgatgcaactacaagcacaatggaaatttaaaaccttgatct |
47743827 |
T |
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