View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21373_low_5 (Length: 436)
Name: NF21373_low_5
Description: NF21373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21373_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 393; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 18 - 426
Target Start/End: Original strand, 1994444 - 1994852
Alignment:
| Q |
18 |
ttataaacttcatttttaccttatagttgtatcaagcaaaacttcatagaaaccactcaaacatgaatttatagttggcacctccttgctaccattgaac |
117 |
Q |
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| T |
1994444 |
ttataaacttcatttttaccttatagttgtatcaagcaaaacttcatagaaaccactcaaacatgaatttatagttggcacctccttgctaccattgaac |
1994543 |
T |
|
| Q |
118 |
aaaaagaaagtttataaaactaattgaaaggaagaaaatattagtaaaatatattgaaataacttcaaaagttatataagaaataaattattgaacactt |
217 |
Q |
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| T |
1994544 |
aaaaagaaagtttataaaactaattgaaaggaagaaaatattactaaaatatattgaaataacttcaaaagttttataagaaataaattattgaacactt |
1994643 |
T |
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| Q |
218 |
gtaacttgattatgatgaatctttgatttatctatgatattgtgggtttaatataagaaattaactaaccttcttcaatccaggtatagtggcagatagt |
317 |
Q |
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| T |
1994644 |
gtgacttgattatgatgaatctttgatttatctatgatattgtgggtttaatataagaaattaactaaccttcttcaatccaggtatagtggcagatagt |
1994743 |
T |
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| Q |
318 |
gctatgaacctctcactaagaacttgtctcctttttctctcagccataatgtgatcttgtatctctgaagagcttctaagattcttggttcttttcttaa |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1994744 |
gctatgaacctctcactaagaacttgtctcctttttctctcagccataatgtgatcttgtatctctgaagagcttctaagattcttggttcttttcttaa |
1994843 |
T |
|
| Q |
418 |
ttgcctttg |
426 |
Q |
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| T |
1994844 |
ttgtctttg |
1994852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 244 - 419
Target Start/End: Original strand, 1987708 - 1987878
Alignment:
| Q |
244 |
tttatctatgatattgtgggtttaatataagaaattaactaaccttcttcaatccaggtatagtggcagatagtgctatgaacctctcactaagaacttg |
343 |
Q |
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|||||| |||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||| |
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| T |
1987708 |
tttatcaatgatattgtgggttt-gtataaga----aactgaccttcttcaatccaggtatagtggcagacagtgctatgaacctttcagtaagaacttg |
1987802 |
T |
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| Q |
344 |
tctcctttttctctcagccataatgtgatcttgtatctctgaagagcttctaagattcttggttcttttcttaatt |
419 |
Q |
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| T |
1987803 |
tctcctttttctctcagccataatgtgatcttgcatctcacaagagcttctaagattcttagttcttttcttaatt |
1987878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 373
Target Start/End: Complemental strand, 45130793 - 45130763
Alignment:
| Q |
343 |
gtctcctttttctctcagccataatgtgatc |
373 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
45130793 |
gtctcctttttctctcagccataatgtgatc |
45130763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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