View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21373_low_6 (Length: 430)
Name: NF21373_low_6
Description: NF21373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21373_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 10 - 422
Target Start/End: Complemental strand, 24753298 - 24752886
Alignment:
| Q |
10 |
cacacaactatcattgtcatcttcatctatcatatccagnnnnnnnnnnnnnnnnnnctgaaattatgtttttaaaaacttgcttctgttacatttacag |
109 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24753298 |
cacacaactatcattgtcatcttcatctatcatatccagaaaataaaaaataaaaaactgaaattatgtttttaaaaacttgcttctgttacatttacag |
24753199 |
T |
|
| Q |
110 |
gtcaatcctgtacaagagttaaaagaacaaagacaaatgttacataaaaacattcttttggtagtcagttgcatatcctaacctattctaaatctaagct |
209 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24753198 |
gtcaatcctgtacaagagttaaaagaacaaagacaaatgttacataaaaacattcttttggtagtcagttgcatatcctaacctattctaaatctaagct |
24753099 |
T |
|
| Q |
210 |
gaaacgtttgctcaggctgactcagctgtactccggatgattgctgaggcaaataactctatgtaagaccaggcacttgtttttgtacattttcaacata |
309 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
24753098 |
gaaacgtttgctcaggctgactcatctgtactccggatgattgctgaggcaaataactctatgtaagaccagtcacttgtttttgtacattttcaacata |
24752999 |
T |
|
| Q |
310 |
tcaaagatcaaactgcaaaagagttgagagggaaacaccccctgggatgctttagcagtttaagaagtggatagaatccacattgacatcatgtatcgcg |
409 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
24752998 |
tcaaagatcaaactgcaaaagagttgagagggaaacaccccctgggatgctttagcagtttaagaagtggatagaatccacattgacatcatgtatctcg |
24752899 |
T |
|
| Q |
410 |
tttacttctcttc |
422 |
Q |
| |
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|||||||| |||| |
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| T |
24752898 |
tttacttcgcttc |
24752886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 10 - 42
Target Start/End: Complemental strand, 39325563 - 39325531
Alignment:
| Q |
10 |
cacacaactatcattgtcatcttcatctatcat |
42 |
Q |
| |
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|||||||| |||||||||||||||||||||||| |
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| T |
39325563 |
cacacaaccatcattgtcatcttcatctatcat |
39325531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 10 - 42
Target Start/End: Complemental strand, 2293246 - 2293214
Alignment:
| Q |
10 |
cacacaactatcattgtcatcttcatctatcat |
42 |
Q |
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|||||||| |||||||||||||||||||||||| |
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| T |
2293246 |
cacacaaccatcattgtcatcttcatctatcat |
2293214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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