View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21373_low_9 (Length: 413)
Name: NF21373_low_9
Description: NF21373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21373_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 384; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 1 - 396
Target Start/End: Complemental strand, 49424223 - 49423829
Alignment:
| Q |
1 |
tcatcaaaggaatttatgtaaattagttggaattatatttttaaagactactaaattactaatcataaactaagggaatcatcatgaatagacttcaaat |
100 |
Q |
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| T |
49424223 |
tcatcaaaggaatttatgtaaattagttggaattatatttttaaagactactaaattactaatcataaactaagggaatcatcatgaatagacttcaaat |
49424124 |
T |
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| Q |
101 |
caaaagatgaatctagcaaggctcgtggttctggtgcaacttggatggcgcttacggagacttccgttccatggtggtttcatgaatggagtgattatcc |
200 |
Q |
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| T |
49424123 |
caaaagatgaatctagcaaggctcgtggttctggtgcaacttggatggcgcttacggagacttccgttccatggtggtttcatgaatggagcgattatcc |
49424024 |
T |
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| Q |
201 |
agattactaatgacaggtttgtatcaactgctccttgaatacttagtatgcctgtggagaaccgagaaactcacgtcttataggtctaataaattcaaaa |
300 |
Q |
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| T |
49424023 |
agattactaatgacaggtttgtatcaactgctccttgaatacttagtatgcctgtggagaaccgagaaactcacgtcttataggtctaataaattcaaaa |
49423924 |
T |
|
| Q |
301 |
aataatggaaatgagaatcaagcttttgaactgtcttaacaagccatttggggaagcttgttcagtgttttaattcaattgttcaaccttcatttt |
396 |
Q |
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| T |
49423923 |
aataatgg-aatgagaatcaagcttttgaactgtcttaacaagccatttggggaagcttgttcagtgttttaattcaattgttcaaccttcatttt |
49423829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 108 - 231
Target Start/End: Original strand, 49416533 - 49416656
Alignment:
| Q |
108 |
tgaatctagcaaggctcgtggttctggtgcaacttggatggcgcttacggagacttccgttccatggtggtttcatgaatggagtgattatccagattac |
207 |
Q |
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| T |
49416533 |
tgaatctagtaaggctgatggatttggtgcagcttggatgacacttacagagacttccgcttcgtggtggtttcatgaacggagtgattatccagattac |
49416632 |
T |
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| Q |
208 |
taatgacaggtttgtatcaactgc |
231 |
Q |
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| ||| | ||||||||||||||| |
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| T |
49416633 |
cattgatacgtttgtatcaactgc |
49416656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 310 - 387
Target Start/End: Original strand, 43363148 - 43363225
Alignment:
| Q |
310 |
aatgagaatcaagcttttgaactgtcttaacaagccatttggggaagcttgttcagtgttttaattcaattgttcaac |
387 |
Q |
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| T |
43363148 |
aatgagaaggaagtttttgaattgtcttaatgagtcatttggggaagcttgtttagtgtttcacttcaattgttcaac |
43363225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 321 - 389
Target Start/End: Complemental strand, 49426060 - 49425992
Alignment:
| Q |
321 |
agcttttgaactgtcttaacaagccatttggggaagcttgttcagtgttttaattcaattgttcaacct |
389 |
Q |
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| T |
49426060 |
agcttttgaactgtcttaatgaatcatttggggaaacttgttcagcttttcaattcaatagttcaacct |
49425992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 166 - 213
Target Start/End: Original strand, 43362976 - 43363025
Alignment:
| Q |
166 |
gttccatggtggtttcatgaatggagtgat--tatccagattactaatga |
213 |
Q |
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| T |
43362976 |
gttccatggtggtttcatgaaagaagtgattatatccagattactaatga |
43363025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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