View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21374_high_5 (Length: 307)

Name: NF21374_high_5
Description: NF21374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21374_high_5
NF21374_high_5
[»] chr1 (1 HSPs)
chr1 (14-292)||(29978896-29979172)
[»] chr5 (1 HSPs)
chr5 (130-292)||(4255210-4255372)
[»] chr8 (2 HSPs)
chr8 (146-287)||(14249514-14249655)
chr8 (101-224)||(13310615-13310738)
[»] chr2 (2 HSPs)
chr2 (203-287)||(29297689-29297773)
chr2 (166-215)||(44691918-44691967)
[»] chr4 (1 HSPs)
chr4 (163-290)||(47549674-47549801)
[»] chr7 (2 HSPs)
chr7 (184-262)||(6230967-6231045)
chr7 (148-260)||(27505859-27505971)
[»] chr6 (1 HSPs)
chr6 (184-262)||(381931-382009)
[»] chr3 (2 HSPs)
chr3 (185-259)||(11820679-11820753)
chr3 (175-225)||(21943295-21943345)


Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 14 - 292
Target Start/End: Complemental strand, 29979172 - 29978896
Alignment:
Q  14 caaagggtggattatggggtgaaggtgcaattaaatctctcactgattaaatacgtggggaaataggggctatccatggtagagccatgacttgggagcc 113  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  29979172 caaagggtggattaaggggtgaaggtgcaattaaatctctcactgattaaatacgtggggaaataggggcaatccatggtagagccatgacttgggagcc 29979073  T
Q  114 tcttgtggatcatgttactaagagattaaatacgtggggaaataaatttttgagttttgaaggtagaatcattctccttaattcggtgttgaatgctatc 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  29979072 tcttgtggatcatgttactaagagattaaatacgtggggaaataaa--tttgagttttggaggtagaatcattctccttaattcggtgttgaatgctatc 29978975  T
Q  214 cccatcttttatctatccttcttgagaatgctggtgaaggtgtggaggaggttggttcgtgttcaaagggagttccttt 292  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  29978974 cccatcttttatctatccttcttgagaatgctggtgaaggtgtggaggaggttggttcgtattcaaagggagttccttt 29978896  T

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Target: chr5 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 130 - 292
Target Start/End: Complemental strand, 4255372 - 4255210
Alignment:
Q  130 actaagagattaaatacgtggggaaataaatttttgagttttgaaggtagaatcattctccttaattcggtgttgaatgctatccccatcttttatctat 229  Q
    |||||||| |||||| ||||||||||||| ||||||||||||| |||||||||  | |||||||||||||||||||| | ||| || |||||||| ||||    
T  4255372 actaagaggttaaattcgtggggaaataagtttttgagttttggaggtagaattgtgctccttaattcggtgttgaacgttattcctatcttttacctat 4255273  T
Q  230 ccttcttgagaatgctggtgaaggtgtggaggaggttggttcgtgttcaaagggagttccttt 292  Q
    |||| || |  |||| ||||||||||||||||||||||||||   | ||||||||||||||||    
T  4255272 ccttttttaagatgccggtgaaggtgtggaggaggttggttcagatacaaagggagttccttt 4255210  T

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Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 146 - 287
Target Start/End: Complemental strand, 14249655 - 14249514
Alignment:
Q  146 cgtggggaaataaatttttgagttttgaaggtagaatcattctccttaattcggtgttgaatgctatccccatcttttatctatccttcttgagaatgct 245  Q
    ||||||| |||||||| |||||||||| ||| |||||  | || |||||||||||||||||||| || || || |||||||| || ||||||||||| |     
T  14249655 cgtgggggaataaattcttgagttttggaggaagaatagtgcttcttaattcggtgttgaatgcaattcctatattttatctttctttcttgagaattcc 14249556  T
Q  246 ggtgaaggtgtggaggaggttggttcgtgttcaaagggagtt 287  Q
    |||||||||||||||||||||||||||  || ||||||||||    
T  14249555 ggtgaaggtgtggaggaggttggttcgatttgaaagggagtt 14249514  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 101 - 224
Target Start/End: Original strand, 13310615 - 13310738
Alignment:
Q  101 tgacttgggagcctcttgtggatcatgttactaagagattaaatacgtggggaaataaatttttgagttttgaaggtagaatcattctccttaattcggt 200  Q
    ||||||||||||||||| |||| ||||| || |  |||||| || |||||||||||||||| | |||||| |  |||||||| || || ||||||||| |    
T  13310615 tgacttgggagcctcttttggaacatgtgacaagaagattacattcgtggggaaataaattctcgagtttcggtggtagaataatgcttcttaattcgat 13310714  T
Q  201 gttgaatgctatccccatctttta 224  Q
    ||||||||| || ||||| |||||    
T  13310715 gttgaatgcaatacccatttttta 13310738  T

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Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 203 - 287
Target Start/End: Original strand, 29297689 - 29297773
Alignment:
Q  203 tgaatgctatccccatcttttatctatccttcttgagaatgctggtgaaggtgtggaggaggttggttcgtgttcaaagggagtt 287  Q
    ||||||| || ||||| ||||| ||||| || |||||||||| ||||||||||||||||||||||||| |  |||||||||||||    
T  29297689 tgaatgcaatgcccattttttacctatcttttttgagaatgccggtgaaggtgtggaggaggttggttagaattcaaagggagtt 29297773  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 215
Target Start/End: Original strand, 44691918 - 44691967
Alignment:
Q  166 agttttgaaggtagaatcattctccttaattcggtgttgaatgctatccc 215  Q
    ||||||| |||||||||  ||||||||||||||||| | |||||||||||    
T  44691918 agttttggaggtagaattgttctccttaattcggtgattaatgctatccc 44691967  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 163 - 290
Target Start/End: Complemental strand, 47549801 - 47549674
Alignment:
Q  163 ttgagttttgaaggtagaatcattctccttaattcggtgttgaatgctatccccatcttttatctatccttcttgagaatgctggtgaaggtgtggagga 262  Q
    ||||||||||  ||||||||  |||| || || |||||| | ||||  ||||| || || ||||| || || |||||||||  |||||||||||||||||    
T  47549801 ttgagttttgggggtagaattgttcttctaaactcggtgattaatgtcatcccaattttctatctttcttttttgagaatgtcggtgaaggtgtggagga 47549702  T
Q  263 ggttggttcgtgttcaaagggagttcct 290  Q
    |||||||| |  | ||||||||||||||    
T  47549701 ggttggttagaatccaaagggagttcct 47549674  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 262
Target Start/End: Original strand, 6230967 - 6231045
Alignment:
Q  184 attctccttaattcggtgttgaatgctatccccatcttttatctatccttcttgagaatgctggtgaaggtgtggagga 262  Q
    |||||||||||| ||||||||||||||||||| || |||||||| ||||| || |   | | |||||||||||||||||    
T  6230967 attctccttaatgcggtgttgaatgctatcccaattttttatctttccttttttaagcttccggtgaaggtgtggagga 6231045  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 260
Target Start/End: Original strand, 27505859 - 27505971
Alignment:
Q  148 tggggaaataaatttttgagttttgaaggtagaatcattctccttaattcggtgttgaatgctatccccatcttttatctatccttcttgagaatgctgg 247  Q
    |||||||| || ||||||||||| | |||| ||||  | ||  | ||||||||||||||||| || || || || || || ||||| |||||||||  ||    
T  27505859 tggggaaacaagtttttgagtttaggaggtcgaattgtccttttgaattcggtgttgaatgcaataccaattttctacctctcctttttgagaatgtcgg 27505958  T
Q  248 tgaaggtgtggag 260  Q
    |||||||||||||    
T  27505959 tgaaggtgtggag 27505971  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 262
Target Start/End: Complemental strand, 382009 - 381931
Alignment:
Q  184 attctccttaattcggtgttgaatgctatccccatcttttatctatccttcttgagaatgctggtgaaggtgtggagga 262  Q
    |||||||||||| ||||||||||||||||||| || |||||||| ||||| || |   | | |||||||||||||||||    
T  382009 attctccttaatgcggtgttgaatgctatcccaattttttatctttccttttttaagcttccggtgaaggtgtggagga 381931  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 259
Target Start/End: Original strand, 11820679 - 11820753
Alignment:
Q  185 ttctccttaattcggtgttgaatgctatccccatcttttatctatccttcttgagaatgctggtgaaggtgtgga 259  Q
    ||||||| ||||| |||||||||| ||| || |||||||| ||||| | ||| |  |||||||||||||||||||    
T  11820679 ttctcctaaattccgtgttgaatgttattcctatcttttacctatcttgctttaagatgctggtgaaggtgtgga 11820753  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 225
Target Start/End: Complemental strand, 21943345 - 21943295
Alignment:
Q  175 ggtagaatcattctccttaattcggtgttgaatgctatccccatcttttat 225  Q
    |||||||| || ||||| || ||||| ||||||||||||||||||||||||    
T  21943345 ggtagaattatcctcctaaactcggttttgaatgctatccccatcttttat 21943295  T

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