View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21374_high_9 (Length: 284)
Name: NF21374_high_9
Description: NF21374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21374_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 48115238 - 48115516
Alignment:
| Q |
1 |
ttctcaatgaaacagaataaaaa-gatttaaagctatatgagttggacagaaaatccatgtgactgtattccttattgtttgcctaag----taagtaat |
95 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |
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| T |
48115238 |
ttctcaatgaaacagaataaaaaagatttaaagctatatgagttggacagaaaatccatgtgactgtattccctattgtttgcctaagtaagtaagtaat |
48115337 |
T |
|
| Q |
96 |
tcggtcattattcctaggtactctgaatttcttcttcctcacatgttttgtccatctttcgataccaaacaaaccactaaataaaatctcaatcattaac |
195 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48115338 |
tcggtcattattcctaggtactctgaatttcttcttcctcacatgttttgtccatctttcgataccaaacaaaccactaaataaaatctcaatcattaac |
48115437 |
T |
|
| Q |
196 |
caaatcaaaacaataccatggatctaccacacgattcacataattatatgtctttacttgccacgatcaatattctctg |
274 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
48115438 |
caaatcaaaacaataccatggatctaccacacgattcacataattatatgtcttttcttgccacgatcaatattctctg |
48115516 |
T |
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