View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21374_low_11 (Length: 289)
Name: NF21374_low_11
Description: NF21374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21374_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 119; Significance: 8e-61; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 21 - 194
Target Start/End: Complemental strand, 34154135 - 34153962
Alignment:
| Q |
21 |
aatcattcccctaataaaagtgctttaagcttattatcttgaacgcatgatgataatgtacgtataagnnnnnnnn-accaatattatttatatttacat |
119 |
Q |
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| T |
34154135 |
aatcattcccctgataaaagtgctataagcttattatcttgaacgcatgatgataatttacgtataagtttttttttaccaatattatt-atatttacat |
34154037 |
T |
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| Q |
120 |
aagctaattatgaatgcactttactaggtgtagtcgtagtacctgcatgtgattagtaatcgataatatatatat |
194 |
Q |
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| T |
34154036 |
aagctaattatgaatgcactttactaggtgtagtcgtagtacctgcatgtcattagtaatcgataatatatatat |
34153962 |
T |
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Target: chr8; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 185 - 277
Target Start/End: Complemental strand, 34153939 - 34153847
Alignment:
| Q |
185 |
atatatatattaatgtaaaaaaggaaatgtagcatattgttatctgctgcatacaatctttaagagcaccatccatttgtgatgcctaactca |
277 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34153939 |
atatatatattaatgtaaaaaaggaaatgtagcatattgttatctgctgcatacaatctttaagagcaccatccatttgtgatgcctaactca |
34153847 |
T |
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