View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21374_low_15 (Length: 250)
Name: NF21374_low_15
Description: NF21374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21374_low_15 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 20 - 250
Target Start/End: Complemental strand, 5269976 - 5269743
Alignment:
| Q |
20 |
ttcaaataattcagatttctttcaacaaaacaatcaatgcttttgttttt---acatgaagnnnnnnntcaggtaagagttttcacacttcacaagctct |
116 |
Q |
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| T |
5269976 |
ttcaaataattcagatttctttcaacaaaacaatcaatgctttttttttttttacatgaagaaaaaaatcaggtaagagttttcacacttcccaagctct |
5269877 |
T |
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| Q |
117 |
caaacaacattcatcccatgacaatacaaaaacaaaaccaagagagtaaagaacacaatataatttcaaaaaacataacagccttcaaatgtgttggtct |
216 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
5269876 |
caaacaacactcatcccatgacaatacaaaaacaaaaccaagagagtaaagaacacaatagaatttcaaaaaacataacagccttcaaatgtgttggtct |
5269777 |
T |
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| Q |
217 |
tcatcaactgaacatggttactgctgcaaccaaa |
250 |
Q |
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|||||||| ||||||||||||||||||||||||| |
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| T |
5269776 |
tcatcaaccgaacatggttactgctgcaaccaaa |
5269743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 128 - 223
Target Start/End: Complemental strand, 5266980 - 5266886
Alignment:
| Q |
128 |
catcccatgacaatacaaaaacaaaaccaagagagtaaagaacacaatataatttcaaaaaac-ataacagccttcaaatgtgttggtcttcatcaa |
223 |
Q |
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|||||||||||||||||||| || |||||||| || ||||| ||||| | || ||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
5266980 |
catcccatgacaatacaaaa-cataaccaagaaag-aaagagcacaagaaaaattcaaaaaaatataacagccttcaaatgtgttggtcttcatcaa |
5266886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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