View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21374_low_17 (Length: 241)
Name: NF21374_low_17
Description: NF21374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21374_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 11 - 220
Target Start/End: Complemental strand, 48115194 - 48114985
Alignment:
| Q |
11 |
aataagataggacatgaaaataagagtatggaagaaaagaagaattcacattttacatttaggtttttgtaaaagttgagataggttcaatatcgagctt |
110 |
Q |
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| T |
48115194 |
aataagataggacatgaaaataagagtatggaagcaaagaagaattctcattttacatgtaggtttttgtaaaagttgagataggttcaatatcgagctt |
48115095 |
T |
|
| Q |
111 |
tattcaaaatccgttcagttcacgattatcgaaccaatcatacaacgttgtagatgtttagtccataagtggtggatagccaccgcctttgttatcatat |
210 |
Q |
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||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48115094 |
tattcaaaatccgtttaattcacgattatcgaaccaatcatacaacgtttgagatgtttagtccataagtggtggatagccaccgcctttgttatcatat |
48114995 |
T |
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| Q |
211 |
tactactatc |
220 |
Q |
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|||||||||| |
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| T |
48114994 |
tactactatc |
48114985 |
T |
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