View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21374_low_2 (Length: 470)
Name: NF21374_low_2
Description: NF21374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21374_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 16 - 306
Target Start/End: Original strand, 35192851 - 35193141
Alignment:
| Q |
16 |
ccaccacctaacagattcaccatcgatctctttgcggtggaagttttggtgacagttacaagcggcgcaaataacagcttcttgacggcgtctgatattc |
115 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
35192851 |
ccaccaccaaacagattcaccatcgatctctttgcggtggaagttctggtgacagttacaagcggcgcaaataacagcttcttgacggcgtatgatattc |
35192950 |
T |
|
| Q |
116 |
tcggtacctcaccgttgaaacaaaactgccgttgtcgttacctttccttctgtcaactccgacggtgagttttgaaggtgaagccgagttagcaagtgag |
215 |
Q |
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|||||||||||||||||||||||||| | |||| |||||||||| | || ||||||| ||||||| ||||||||| ||||||||||||||||||||||| |
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| T |
35192951 |
tcggtacctcaccgttgaaacaaaaccgttgttgccgttaccttttcatccgtcaacttcgacggtaagttttgaacgtgaagccgagttagcaagtgag |
35193050 |
T |
|
| Q |
216 |
tcttaacttgttggcactggtgtttgtgtttctggaatctccatatcctcttcttgtccatcaaattccatctcactcttcaaacaattaa |
306 |
Q |
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| T |
35193051 |
tcataacttgttggcactggtgtttgtgtttctggaatctccatatcctcttcttgttcatcaaattccatctcactcttcaaacaattaa |
35193141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 16 - 305
Target Start/End: Original strand, 44747912 - 44748201
Alignment:
| Q |
16 |
ccaccacctaacagattcaccatcgatctctttgcggtggaagttttggtgacagttacaagcggcgcaaataacagcttcttgacggcgtctgatattc |
115 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
44747912 |
ccaccacctaacagattcaccatcgatctctttgcagtggaagttctggtgacagttacaagcggcgcaaataacagcttcttgatggcgtctgatattc |
44748011 |
T |
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| Q |
116 |
tcggtacctcaccgttgaaacaaaactgccgttgtcgttacctttccttctgtcaactccgacggtgagttttgaaggtgaagccgagttagcaagtgag |
215 |
Q |
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| T |
44748012 |
tcggtacctcatcgttgaaacaaaaccgtcgttgccattacctttccttccgtcaactccgacggtgagttttgaacgtgaagccgagttagcaagtgag |
44748111 |
T |
|
| Q |
216 |
tcttaacttgttggcactggtgtttgtgtttctggaatctccatatcctcttcttgtccatcaaattccatctcactcttcaaacaatta |
305 |
Q |
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|| |||||||||||||||||||||| ||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |
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| T |
44748112 |
tcataacttgttggcactggtgtttatgtttctagaatctccatatcatcttcttgttcatcaaattccatctcactcttcaaacaatta |
44748201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 106 - 272
Target Start/End: Complemental strand, 26146006 - 26145840
Alignment:
| Q |
106 |
tctgatattctcggtacctcaccgttgaaacaaaactgccgttgtcgttacctttccttctgtcaactccgacggtgagttttgaaggtgaagccgagtt |
205 |
Q |
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||||| ||||| ||||||||| ||| |||||||||| ||||||| | ||||||||||||| ||||||| ||||||||||||||||| ||||||| || || |
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| T |
26146006 |
tctgacattctaggtacctcatcgtcgaaacaaaaccgccgttgccattacctttccttccgtcaactacgacggtgagttttgaacgtgaagctgaatt |
26145907 |
T |
|
| Q |
206 |
agcaagtgagtcttaacttgttggcactggtgtttgtgtttctggaatctccatatcctcttcttgt |
272 |
Q |
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| ||||| | || ||||| |||||||||||||||||||||| |||||||||||| |||||||||||| |
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| T |
26145906 |
accaagtcaatcataactcgttggcactggtgtttgtgtttttggaatctccatctcctcttcttgt |
26145840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 339 - 374
Target Start/End: Original strand, 44748233 - 44748268
Alignment:
| Q |
339 |
atggttaagtgttgtagctttagaacagattaacaa |
374 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
44748233 |
atggttaagtgttgtagctttagaacagattaacaa |
44748268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 100; Significance: 3e-49; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 106 - 306
Target Start/End: Complemental strand, 27508118 - 27507912
Alignment:
| Q |
106 |
tctgatattctcggtacctcaccgttgaaacaaaactgccgttgtcgttacctttccttctgtcaactccgacggtgagttttgaaggtgaagccgagtt |
205 |
Q |
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||||| |||||||||||||||||| || |||||| ||||||| ||||||||||||||| ||||||||| ||||||||||||||| ||||||| ||||| |
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| T |
27508118 |
tctgacattctcggtacctcaccg---aagcaaaaccgccgttgccgttacctttccttccgtcaactccaacggtgagttttgaacgtgaagctgagtt |
27508022 |
T |
|
| Q |
206 |
agcaagtgagtcttaacttgttggcactggtgtttgtgtttctggaatctccatatcctcttc---------ttgtccatcaaattccatctcactcttc |
296 |
Q |
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| T |
27508021 |
actaagtgagtcataactcgttggcactggtgtttgtatttctggaatctccatctcctcttcttgttcctcttgttcatcaaattccatttcactcttc |
27507922 |
T |
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| Q |
297 |
aaacaattaa |
306 |
Q |
| |
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|||||||||| |
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| T |
27507921 |
aaacaattaa |
27507912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 31 - 96
Target Start/End: Complemental strand, 27508264 - 27508199
Alignment:
| Q |
31 |
ttcaccatcgatctctttgcggtggaagttttggtgacagttacaagcggcgcaaataacagcttc |
96 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
27508264 |
ttcaccatcgatctctttgcggtggaagttccggtgacagttacaagcggcgcaaataacagcttc |
27508199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 95; Significance: 3e-46; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 106 - 272
Target Start/End: Complemental strand, 137486 - 137320
Alignment:
| Q |
106 |
tctgatattctcggtacctcaccgttgaaacaaaactgccgttgtcgttacctttccttctgtcaactccgacggtgagttttgaaggtgaagccgagtt |
205 |
Q |
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||||| ||||||||||||||| ||| |||||||||| ||||||| | ||||||||||||||||||||| ||||||||||||||||| ||||| || || |
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| T |
137486 |
tctgacattctcggtacctcatcgtcgaaacaaaaccgccgttgccattacctttccttctgtcaactacgacggtgagttttgaacttgaagttgaatt |
137387 |
T |
|
| Q |
206 |
agcaagtgagtcttaacttgttggcactggtgtttgtgtttctggaatctccatatcctcttcttgt |
272 |
Q |
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| ||||| |||| ||||| |||||||||||||||||||||| |||||||||||| |||||||||||| |
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| T |
137386 |
accaagtcagtcataactcgttggcactggtgtttgtgtttttggaatctccatctcctcttcttgt |
137320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 106 - 272
Target Start/End: Complemental strand, 30232319 - 30232153
Alignment:
| Q |
106 |
tctgatattctcggtacctcaccgttgaaacaaaactgccgttgtcgttacctttccttctgtcaactccgacggtgagttttgaaggtgaagccgagtt |
205 |
Q |
| |
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||||| ||||||||||||||| ||| ||||||||| ||||||| | ||||||||||||| ||||||| ||||||||||||||||| ||||||| || || |
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| T |
30232319 |
tctgacattctcggtacctcatcgtcaaaacaaaaccgccgttgccattacctttccttccgtcaactacgacggtgagttttgaatgtgaagctgaatt |
30232220 |
T |
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| Q |
206 |
agcaagtgagtcttaacttgttggcactggtgtttgtgtttctggaatctccatatcctcttcttgt |
272 |
Q |
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| T |
30232219 |
accaagtcagtcataactcgttggcactggtgtttgtgtttttggaatctccatctcctcttcttgt |
30232153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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