View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21374_low_3 (Length: 434)
Name: NF21374_low_3
Description: NF21374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21374_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 55 - 418
Target Start/End: Complemental strand, 30688592 - 30688227
Alignment:
| Q |
55 |
ataagcccagcccacagcctagtaatatattttcttaacctcctgagtatcatgccc--aacttttgctccatacaaaatcagttctaacctacaactgc |
152 |
Q |
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| T |
30688592 |
ataagcccagcccacagcctagtaatatattttcttaacctcctgagtatcatgcccccagcttttgctccatacaaaatcagttctaacctacaactgc |
30688493 |
T |
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| Q |
153 |
gcagatggagctgtataatagtatggtaaggaaagaaggtagtgaaggtgagcaggaagctaagaaggcctatagagctgcaaggaaggatagtgacggt |
252 |
Q |
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| T |
30688492 |
gcagatggagctgtataatagtatggtaaggaaagaaggtggtgaaggtgagcaggaagctaagaaggcctatagagctgcaaggaaggatagtgacggt |
30688393 |
T |
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| Q |
253 |
gctttggaggtcgctattaatgacaaggtttcttcagcacttgttgacaaggtaaacttatgaccctctacctctagtttttatttgatgccatttaata |
352 |
Q |
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| T |
30688392 |
gctttggaggtcgctattagtgacaaggtttcttcagcacttgttgacaaggtaaacttatgaccctctacctctagtttttatttgatgccatttaata |
30688293 |
T |
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| Q |
353 |
attgtaaaataaaaaagaaatcagattatctgttaatcattagctgaatgcctggattatattctt |
418 |
Q |
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| T |
30688292 |
attgtaaaacaaaaaagaaatcagattatctgctaatcattagctgaatgcctggattatattctt |
30688227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 30688592 - 30688654
Alignment:
| Q |
1 |
tcctcctacatagcagtatagttagcctactttatatgcgtagatacagatacaataagccca |
63 |
Q |
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| T |
30688592 |
tcctcctacatagcagtatagttagcctactttatatgtgtagatacagatacaataagccca |
30688654 |
T |
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