View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21374_low_4 (Length: 404)
Name: NF21374_low_4
Description: NF21374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21374_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Complemental strand, 30688616 - 30688227
Alignment:
| Q |
1 |
ctaactatactgctatgtaggaggataagcccagcccacagcctagtaatatattttcttaacctcctgagtatcatgccc--aacttttgctccataca |
98 |
Q |
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| T |
30688616 |
ctaactatactgctatgtaggaggataagcccagcccacagcctagtaatatattttcttaacctcctgagtatcatgcccccagcttttgctccataca |
30688517 |
T |
|
| Q |
99 |
aaatcagttctaacctacaactgcgcagatggagctgtataatagtatggtaaggaaagaaggtagtgaaggtgagcaggaagctaagaaggcctataga |
198 |
Q |
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| T |
30688516 |
aaatcagttctaacctacaactgcgcagatggagctgtataatagtatggtaaggaaagaaggtggtgaaggtgagcaggaagctaagaaggcctataga |
30688417 |
T |
|
| Q |
199 |
gctgcaaggaaggatagtgacggtgctttggaggtcgctattaatgacaaggtttcttcagcacttgttgacaaggtaaacttatgaccctctacctcta |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30688416 |
gctgcaaggaaggatagtgacggtgctttggaggtcgctattagtgacaaggtttcttcagcacttgttgacaaggtaaacttatgaccctctacctcta |
30688317 |
T |
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| Q |
299 |
gtttttatttgatgccatttaataattgtaaaataaaaaagaaatcagattatctgttaatcattagctgaatgcctggattatattctt |
388 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
30688316 |
gtttttatttgatgccatttaataattgtaaaacaaaaaagaaatcagattatctgctaatcattagctgaatgcctggattatattctt |
30688227 |
T |
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