View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21374_low_5 (Length: 399)
Name: NF21374_low_5
Description: NF21374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21374_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 16 - 385
Target Start/End: Original strand, 17923616 - 17923987
Alignment:
| Q |
16 |
atgataacattgacttaacaaactataaactttacacttcaattctaaacaagtctgtgtcgacttcaagagcaattgctacnnnnnnnn---ccatcat |
112 |
Q |
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| T |
17923616 |
atgataacattgacttaacaaactataaactttacacttcaattctaaacaagtctgtgtcgacttcaagagcaattgctacaaaaaaaaaaaccatcat |
17923715 |
T |
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| Q |
113 |
ataaacaaaataaaatacgaatttggagaacttaaaaagacgatactaacacaccgttgtaggtgagatttagcatgatcaacgttgtgggaatggtgaa |
212 |
Q |
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| T |
17923716 |
ataaa-aaaataaaatactaatttgaagaacttaaaaagacgatactaacacatccttgtaggtgagatttagcatgatgaacgttgtgggaatggtgaa |
17923814 |
T |
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| Q |
213 |
gaaggatattggcgatacgaagacgagttttgacttcgatgatttggtagaaagaaacatcgctttgacagattgcttctaggcattttactgcctttgc |
312 |
Q |
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| T |
17923815 |
gaaggatagtggcaatacgaagacgagttttgacttcgatgattgggtagaaagaaacatcgctttgacagattgcttctaggcattttactgcctttgc |
17923914 |
T |
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| Q |
313 |
tatttgacctagcttttcgtgatggtctgctagtccccataacccttctgctagtgcttccattgttgtatat |
385 |
Q |
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| T |
17923915 |
tatttgacctagcttttcgtgatggtctgctagtccccataacccttctgctggtgcttccattgttgtatat |
17923987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 121; Significance: 7e-62; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 149 - 381
Target Start/End: Original strand, 32359144 - 32359376
Alignment:
| Q |
149 |
aagacgatactaacacaccgttgtaggtgagatttagcatgatcaacgttgtgggaatggtgaagaaggatattggcgatacgaagacgagttttgactt |
248 |
Q |
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| T |
32359144 |
aagaagatactaacacaacgttcgaggtgagatttagcgtgattagcgttatgagaatgatgaagaaggattgtggcgatacgaagacgagttttgactt |
32359243 |
T |
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| Q |
249 |
cgatgatttggtagaaagaaacatcgctttgacagattgcttctaggcattttactgcctttgctatttgacctagcttttcgtgatggtctgctagtcc |
348 |
Q |
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| T |
32359244 |
caacgattgggaagaaggaaacttcgctttgacagattgcttctagacattttactgcctttgctatttctcctcggttttcgtgatggtctgctaatcc |
32359343 |
T |
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| Q |
349 |
ccataacccttctgctagtgcttccattgttgt |
381 |
Q |
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| T |
32359344 |
ccatagtccttctgctattgcttccattcttgt |
32359376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 200 - 249
Target Start/End: Original strand, 33581887 - 33581936
Alignment:
| Q |
200 |
tgggaatggtgaagaaggatattggcgatacgaagacgagttttgacttc |
249 |
Q |
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| T |
33581887 |
tgggaatgatgaagaaggattgtggcgattcgaagacgagttttgacttc |
33581936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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