View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21374_low_6 (Length: 361)
Name: NF21374_low_6
Description: NF21374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21374_low_6 |
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| [»] chr7 (8 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 284; Significance: 1e-159; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 361
Target Start/End: Complemental strand, 4653431 - 4653071
Alignment:
| Q |
1 |
tatgcactctgaagaaggaagcacgcaaattgaaagagttaatcttacaatcaagctacagagagcaactaaccacacaaaatatcgtgatgtcatattg |
100 |
Q |
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| T |
4653431 |
tatgcactctgaagaaggaagcactcaaattgaaagagttaatcttacaatcaagctacagagagcaactaaccacacaaaataccgcgatgtcatattg |
4653332 |
T |
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| Q |
101 |
aatggaatccagattttaaaagaaagtgactacaacgacaatcttgcaggatcaataacaaaatccattgatcaggatttttcaacccaatcatcnnnnn |
200 |
Q |
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| T |
4653331 |
aatggaatccagattttaaaagaaagtgactacaacgacaatctcgcaggatcaataacaaaatccattgatcaggaattttcaacccaatcaccaaaaa |
4653232 |
T |
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| Q |
201 |
nnnttaagatcaccatagcgattgttgcgacgattatagtttccggcctcttgctagcaatgatcgtaggcaacacannnnnnnggctaaggaaaaagct |
300 |
Q |
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| T |
4653231 |
aaattaagatcaccatagcgattgttgcgacgattgtagtttccagcctcttgctagcaatgatcgtaggcaacacatttttttggctaaggaaaaagct |
4653132 |
T |
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| Q |
301 |
tcatattgtcatgaaagatagctcatcaaagacaaagaacaaagggtcgtcatctttgcca |
361 |
Q |
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| T |
4653131 |
tcatattgtcatgaaagatagctcatcaaagacaaagaacaaagggtcgtcatctttgcca |
4653071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 4697374 - 4697433
Alignment:
| Q |
1 |
tatgcactctgaagaaggaagcacgcaaattgaaagagttaatcttacaatcaagctaca |
60 |
Q |
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| T |
4697374 |
tatgcactctcaagaaggaagctctcaaattgaaagacttaatctttcaatcaagctaca |
4697433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 4630838 - 4630782
Alignment:
| Q |
1 |
tatgcactctgaagaaggaagcacgcaaattgaaagagttaatcttacaatcaagct |
57 |
Q |
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| T |
4630838 |
tatgtactctcaagaaggaagctctcaaattgaaagagttaatctttcaatcaagct |
4630782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 286 - 348
Target Start/End: Complemental strand, 4672266 - 4672204
Alignment:
| Q |
286 |
gctaaggaaaaagcttcatattgtcatgaaagatagctcatcaaagacaaagaacaaagggtc |
348 |
Q |
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| T |
4672266 |
gctaaggaaaaggattaaaaatgccatgaaagatagctcatcgaagacaaagaacaaagggtc |
4672204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 170
Target Start/End: Complemental strand, 4666740 - 4666671
Alignment:
| Q |
101 |
aatggaatccagattttaaaagaaagtgactacaacgacaatcttgcaggatcaataacaaaatccattg |
170 |
Q |
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| T |
4666740 |
aatggaatcgagattttaaaaataagtgacaaaaataacaatctcgcaggaccaatatcaaaatccattg |
4666671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 4672587 - 4672542
Alignment:
| Q |
1 |
tatgcactctgaagaaggaagcacgcaaattgaaagagttaatctt |
46 |
Q |
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| T |
4672587 |
tatgtactctcaagaaggaagctctcaaattgaaagagttaatctt |
4672542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 4647444 - 4647388
Alignment:
| Q |
1 |
tatgcactctgaagaaggaagcacgcaaattgaaagagttaatcttacaatcaagct |
57 |
Q |
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| T |
4647444 |
tatgtactctcaaggaggaaggaatcaaattgaaagagttaatctttcaatcaagct |
4647388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 4863828 - 4863792
Alignment:
| Q |
6 |
actctgaagaaggaagcacgcaaattgaaagagttaa |
42 |
Q |
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| T |
4863828 |
actctgaagaaggaagctctcaaattgaaagagttaa |
4863792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 13 - 173
Target Start/End: Original strand, 18925938 - 18926104
Alignment:
| Q |
13 |
agaaggaagcacgcaaattgaaagagttaatcttacaatcaagctacagagagcaac------taaccacacaaaatatcgtgatgtcatattgaatgga |
106 |
Q |
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| T |
18925938 |
agaaggaagctcgcaaattaaaagagttaatctttcaataaagctacaacgagcaccagaaaatatctactcaaaataccgtaatgtcacattgaatggg |
18926037 |
T |
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| Q |
107 |
atccagattttaaaagaaagtgactacaacgacaatcttgcaggatcaataacaaaatccattgatc |
173 |
Q |
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| T |
18926038 |
atcgagattttgaaaataagtgacaaaaataacaatctcgcaggatcaatatcaaaatccaatgatc |
18926104 |
T |
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