View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21374_low_7 (Length: 354)
Name: NF21374_low_7
Description: NF21374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21374_low_7 |
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| [»] scaffold0021 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 144; Significance: 1e-75; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 147 - 310
Target Start/End: Complemental strand, 17923493 - 17923330
Alignment:
| Q |
147 |
aagatcatggaaactcggcttaggttatttgggagaatagaaggcgagacataggatcaaacatttcaactcgtttaagttattggtttaagtaattggg |
246 |
Q |
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| T |
17923493 |
aagatcatggaaactcggcttaggttatttgggagaatagaaggcgtgacataggatcaaacatttcaattcgtttaagttatgggtttaagtaattggg |
17923394 |
T |
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| Q |
247 |
ggatctaggttcaaaccctaatgaaagagaaaaatactaacctaacaactaataactaacgttg |
310 |
Q |
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| T |
17923393 |
ggatctaggttcaaaccctaatgaaagagaaaaatactaccctaacaactaataactaaagttg |
17923330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 17923639 - 17923531
Alignment:
| Q |
1 |
agtttgttaagtcaatgttatcatcttgttggagatattaaatatcagaaaaaagttttgtttgagggtcttcaacttgctgcctcttctgctggaaata |
100 |
Q |
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| T |
17923639 |
agtttgttaagtcaatgttatcatcttgttggagatattaaatatcagaaaaaaattttgtttgagggtcttcaacttgctgcctcttctgctggaaata |
17923540 |
T |
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| Q |
101 |
atgagtata |
109 |
Q |
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| T |
17923539 |
atgagtata |
17923531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 242 - 318
Target Start/End: Complemental strand, 17923255 - 17923179
Alignment:
| Q |
242 |
ttgggggatctaggttcaaaccctaatgaaagagaaaaatactaacctaacaactaataactaacgttggatccatt |
318 |
Q |
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| T |
17923255 |
ttggaggatctaggtcgaaaccctagtgaaagagaaaaacactaacctaacaactaataactaacgttggatccatt |
17923179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 32359024 - 32358926
Alignment:
| Q |
1 |
agtttgttaagtcaatgttatcatcttgttggagatattaaatatcagaaaaaagttttgtttgagggtcttcaacttgctgcctcttctgctggaaat |
99 |
Q |
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||||||| ||||| ||||||||||||||||||| |||| || ||||||| | ||||||||| |||||||| | |||||||| |||||||||||||| |
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| T |
32359024 |
agtttgtcgagtcagtgttatcatcttgttggagctattcaacctcagaaacaggttttgtttaagggtcttgatcttgctgctgcttctgctggaaat |
32358926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 300
Target Start/End: Original strand, 31951915 - 31951959
Alignment:
| Q |
255 |
gttcaaaccctaatgaaagagaaaaatactaacctaacaactaata |
300 |
Q |
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| T |
31951915 |
gttcaaaccctagtgaaagag-aaaatactaacataacaactaata |
31951959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0021 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0021
Description:
Target: scaffold0021; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 306
Target Start/End: Original strand, 155280 - 155313
Alignment:
| Q |
273 |
gagaaaaatactaacctaacaactaataactaac |
306 |
Q |
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| T |
155280 |
gagaaaaatactaacctaacaactaattactaac |
155313 |
T |
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