View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21375_high_11 (Length: 276)
Name: NF21375_high_11
Description: NF21375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21375_high_11 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 21 - 276
Target Start/End: Original strand, 3448497 - 3448752
Alignment:
| Q |
21 |
ccaagattaagacccatcataatctcaaccaaaatattaggatcattataattccgaacagcttgaacaatacccttaacacgtttaaaacaatcctcat |
120 |
Q |
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| T |
3448497 |
ccaagattaagacccatcataatctcaaccaaaacattaggatcattataattccgaacagcttgaacaatacccttaacacgtttaaaacaatcctcat |
3448596 |
T |
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| Q |
121 |
aaccaaaaacctctgctcccacaaacacaccatgacaacccaactgcatcatcaacgctgcgtccgccggagtcacaatcccactggcagcaaaatgcac |
220 |
Q |
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| T |
3448597 |
aaccaaaaacctctgctcccacaaacacaccatgacaacccaactgcatcatcaacgccgcgtccgcgggagtcacaatcccaccggcagcaaaatgcac |
3448696 |
T |
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| Q |
221 |
aacaggtaatctacccatctgtttcgtctgcgcaacaatatcataaggcgcttgaa |
276 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3448697 |
aacaggtaatctacccatctgtttcgtctgcgcaacaatatcataaggcgcttgaa |
3448752 |
T |
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