View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21375_high_12 (Length: 275)
Name: NF21375_high_12
Description: NF21375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21375_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 20 - 265
Target Start/End: Original strand, 53671966 - 53672211
Alignment:
| Q |
20 |
tagcacacttgctaaaattgtatcaatttttaatcatagcatttcttgtgttgcaattgtgttgttttaatatatcatcttctggc-ttttttcatataa |
118 |
Q |
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| T |
53671966 |
tagcacacttgctaaaattgtatcaatttttaatcatagcatttcttgtgttgcaattgtgttgttttaatatatcatcttctggccttttttcatataa |
53672065 |
T |
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| Q |
119 |
aaaagaaaatctatcttaaccatccatccattgtgaagattaattgttctcatgctttcatattctaacattctcatatgttattaagttacaaaaataa |
218 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53672066 |
aaaagaaaata-atcttaaccatccatccattgtgaagattaattgttctcatgctttcatattctaacattctcatatgttattaagttacaaaaataa |
53672164 |
T |
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| Q |
219 |
tcagccaacttgtaatcttcaacttcattacaacatactcctctctg |
265 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
53672165 |
tcagccaacttctaatcttcaacttcattacaacatactcctctctg |
53672211 |
T |
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