View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21375_high_14 (Length: 240)

Name: NF21375_high_14
Description: NF21375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21375_high_14
NF21375_high_14
[»] chr6 (3 HSPs)
chr6 (2-224)||(23905868-23906090)
chr6 (15-192)||(23947898-23948075)
chr6 (42-192)||(18603075-18603225)
[»] chr8 (4 HSPs)
chr8 (5-207)||(17748230-17748432)
chr8 (61-198)||(260823-260960)
chr8 (61-198)||(654961-655098)
chr8 (61-198)||(840696-840833)
[»] chr4 (1 HSPs)
chr4 (30-164)||(25229979-25230113)
[»] chr7 (2 HSPs)
chr7 (1-137)||(27223552-27223688)
chr7 (38-211)||(15962907-15963079)
[»] chr2 (4 HSPs)
chr2 (120-200)||(24226712-24226792)
chr2 (122-211)||(20662075-20662164)
chr2 (38-130)||(19993621-19993713)
chr2 (100-191)||(37488954-37489046)
[»] chr5 (1 HSPs)
chr5 (5-173)||(33699582-33699749)
[»] chr1 (5 HSPs)
chr1 (41-87)||(25427422-25427468)
chr1 (122-198)||(20186033-20186112)
chr1 (39-87)||(16976157-16976205)
chr1 (30-85)||(35395026-35395081)
chr1 (101-142)||(17622277-17622318)


Alignment Details
Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 2 - 224
Target Start/End: Original strand, 23905868 - 23906090
Alignment:
Q  2 tagactagcccaattagggtgaagcagtataacttatttgtgtcatctactctatcccttaactcctttgtttgatagttcaaaagtaagtacaaccgtc 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23905868 tagactagcccaattagggtgaagcagtataacttatttgtgtcatctactctatcccttaactcctttgtttgatagttcaaaagtaagtacaaccgtc 23905967  T
Q  102 caatctcttcttatatcaaattcattttgatccatatttcagatcaccagatttgaacatcttttcacggttgagaagcagccaaaattttcaaagggtg 201  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  23905968 caatctcttcttatatcaaattcattttgatacatatttcagatcaccagatttgaacatcttttcatgtttgagaagcagccaaaattttcaaagggtg 23906067  T
Q  202 acaatccaaaaacgcttccttgt 224  Q
    ||||||||||||| |||||||||    
T  23906068 acaatccaaaaacccttccttgt 23906090  T

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Target: chr6; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 15 - 192
Target Start/End: Complemental strand, 23948075 - 23947898
Alignment:
Q  15 ttagggtgaagcagtataacttatttgtgtcatctactctatcccttaactcctttgtttgatagttcaaaagtaagtacaaccgtccaatctcttctta 114  Q
    ||||| ||||||| ||||||||  ||||||||||| |||||||||| |||| |||| ||||||| |||||||| |||| ||| | |||||| | |||||     
T  23948075 ttaggttgaagcaatataacttcattgtgtcatcttctctatccctgaacttctttatttgataattcaaaagcaagttcaatcatccaatttgttcttg 23947976  T
Q  115 tatcaaattcattttgatccatatttcagatcaccagatttgaacatcttttcacggttgagaagcagccaaaatttt 192  Q
    |||||||||||||||||| |||| ||||  ||| ||| | |||||||||| ||| |||||||||||||||||||||||    
T  23947975 tatcaaattcattttgatacatacttcatgtcatcagttctgaacatcttctcaaggttgagaagcagccaaaatttt 23947898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 42 - 192
Target Start/End: Complemental strand, 18603225 - 18603075
Alignment:
Q  42 tgtcatctactctatcccttaactcctttgtttgatagttcaaaagtaagtacaaccgtccaatctcttcttatatcaaattcattttgatccatatttc 141  Q
    |||||||| || ||||||||||||| ||| |||||||||||| ||| ||| | || | || ||||| || || |||||||||||||||||| |||| ||     
T  18603225 tgtcatcttctttatcccttaactcatttatttgatagttcagaagcaagcaaaatcatctaatcttttattgtatcaaattcattttgatacatactta 18603126  T
Q  142 agatcaccagatttgaacatcttttcacggttgagaagcagccaaaatttt 192  Q
    ||||||||| || |||  ||||| |||  ||||||||||||||||||||||    
T  18603125 agatcaccatatctgaggatcttctcaaagttgagaagcagccaaaatttt 18603075  T

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Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 5 - 207
Target Start/End: Original strand, 17748230 - 17748432
Alignment:
Q  5 actagcccaattagggtgaagcagtataacttatttgtgtcatctactctatcccttaactcctttgtttgatagttcaaaagtaagtacaaccgtccaa 104  Q
    ||||||||| |||||||||| ||  |||| ||  |||||| | || ||||||| |||||||| ||| ||||||  |||| ||| ||  |||| | |||||    
T  17748230 actagcccatttagggtgaaccatgataaattcgttgtgttaacttctctatctcttaactcatttatttgatctttcataagaaaacacaatcatccaa 17748329  T
Q  105 tctcttcttatatcaaattcattttgatccatatttcagatcaccagatttgaacatcttttcacggttgagaagcagccaaaattttcaaagggtgaca 204  Q
    ||||||||| |||||||||||||||||| |||| |||  || |  | |||| |||||||| ||| |||||||||| |||||||||||||||||||| |||    
T  17748330 tctcttcttgtatcaaattcattttgatacatacttcgtataattatatttcaacatcttctcaaggttgagaagtagccaaaattttcaaagggtcaca 17748429  T
Q  205 atc 207  Q
    |||    
T  17748430 atc 17748432  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 61 - 198
Target Start/End: Original strand, 260823 - 260960
Alignment:
Q  61 taactcctttgtttgatagttcaaaagtaagtacaaccgtccaatctcttcttatatcaaattcattttgatccatatttcagatcaccagatttgaaca 160  Q
    |||||||||| |||||||| ||  ||| ||| |||   ||||||||||||||| ||||||||| |||| ||  ||||||| |||||  || || ||||||    
T  260823 taactcctttatttgatagatcggaagcaagcacatatgtccaatctcttcttgtatcaaattaatttggacacatattttagatcctcaaatctgaaca 260922  T
Q  161 tcttttcacggttgagaagcagccaaaattttcaaagg 198  Q
    |||| |||  ||||||||| ||| ||||||||||||||    
T  260923 tcttctcaaagttgagaaggagctaaaattttcaaagg 260960  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 61 - 198
Target Start/End: Complemental strand, 655098 - 654961
Alignment:
Q  61 taactcctttgtttgatagttcaaaagtaagtacaaccgtccaatctcttcttatatcaaattcattttgatccatatttcagatcaccagatttgaaca 160  Q
    |||||||||| |||||||| ||  ||| ||| |||   ||||||||||||||| ||||||||| |||| ||  ||||||| |||||  || || ||||||    
T  655098 taactcctttatttgatagatcggaagcaagcacatatgtccaatctcttcttgtatcaaattaatttggacacatattttagatcctcaaatctgaaca 654999  T
Q  161 tcttttcacggttgagaagcagccaaaattttcaaagg 198  Q
    |||| |||  ||||||||| ||| ||||||||||||||    
T  654998 tcttctcaaagttgagaaggagctaaaattttcaaagg 654961  T

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Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 61 - 198
Target Start/End: Complemental strand, 840833 - 840696
Alignment:
Q  61 taactcctttgtttgatagttcaaaagtaagtacaaccgtccaatctcttcttatatcaaattcattttgatccatatttcagatcaccagatttgaaca 160  Q
    |||||||||| |||||||| ||  ||| ||| |||   ||||||||||||||| ||||||||| |||| ||  ||||||| |||||  || || ||||||    
T  840833 taactcctttatttgatagatcggaagcaagcacatatgtccaatctcttcttgtatcaaattaatttggacacatattttagatcctcaaatctgaaca 840734  T
Q  161 tcttttcacggttgagaagcagccaaaattttcaaagg 198  Q
    |||| |||  ||||||||| ||| ||||||||||||||    
T  840733 tcttctcaaagttgagaaggagctaaaattttcaaagg 840696  T

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Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 30 - 164
Target Start/End: Original strand, 25229979 - 25230113
Alignment:
Q  30 ataacttatttgtgtcatctactctatcccttaactcctttgtttgatagttcaaaagtaagtacaaccgtccaatctcttcttatatc-aaattcattt 128  Q
    ||||||| |||||||||||| |||||||||| ||||||||| |||| ||||||| ||| ||   |||   |||||||| ||||| |||| ||||||||||    
T  25229979 ataacttctttgtgtcatcttctctatccct-aactcctttatttgctagttcataagaaaacgcaataatccaatcttttcttgtatcgaaattcattt 25230077  T
Q  129 tgatccatatttcagatcaccagatttgaacatctt 164  Q
    |||| ||||| |||||||| ||||| ||||||||||    
T  25230078 tgatacatatatcagatcatcagatatgaacatctt 25230113  T

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Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 27223552 - 27223688
Alignment:
Q  1 ctagactagcccaattagggtgaagcagtataacttatttgtgtcatctactctatcccttaactcctttgtttgatagttcaaaagtaagtacaaccgt 100  Q
    ||||||||| | | |||||||||| ||  ||||||| |||||||||||| || | |||||| |||||||| |||||||||||| ||| ||  |||| | |    
T  27223552 ctagactagtctagttagggtgaaccataataacttgtttgtgtcatcttctttgtcccttcactcctttatttgatagttcataagaaaacacaatcat 27223651  T
Q  101 ccaatctcttcttatatcaaattcattttgatccata 137  Q
    ||||| ||||||| ||||||||| | |||||| ||||    
T  27223652 ccaatttcttcttctatcaaattaactttgatacata 27223688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 38 - 211
Target Start/End: Complemental strand, 15963079 - 15962907
Alignment:
Q  38 tttgtgtcatctactctatcccttaactcctttgtttgatagttcaaaagtaagtacaaccgtccaatctcttcttatatcaaattcattttgatccata 137  Q
    ||||| |||||| |||| |||||| | || ||| ||||||||| || ||| ||| |||  | |||||||||||||| ||||||||||| |||||| ||||    
T  15963079 tttgtatcatcttctct-tcccttgaatcttttatttgatagtgcataagcaagcacattcatccaatctcttcttgtatcaaattca-tttgatacata 15962982  T
Q  138 tttcagatcaccagatttgaacatcttttc-acggttgagaagcagccaaaattttcaaagggtgacaatccaaa 211  Q
    |||||||||  |  || |||| ||||| || | | |||||||||||||||| |||| ||||||| ||||| ||||    
T  15962981 tttcagatcctctcatctgaatatcttctcaaagtttgagaagcagccaaattttttaaagggtcacaattcaaa 15962907  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 120 - 200
Target Start/End: Original strand, 24226712 - 24226792
Alignment:
Q  120 aattcattttgatccatatttcagatcaccagatttgaacatcttttcacggttgagaagcagccaaaattttcaaagggt 200  Q
    |||| |||||||| |||| || |||||| || |||||||||| || ||| ||| |||||||||||||||||||||||||||    
T  24226712 aatttattttgatacatactttagatcatcatatttgaacatattctcaaggtggagaagcagccaaaattttcaaagggt 24226792  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 122 - 211
Target Start/End: Complemental strand, 20662164 - 20662075
Alignment:
Q  122 ttcattttgatccatatttcagatcaccagatttgaacatcttttcacggttgagaagcagccaaaattttcaaagggtgacaatccaaa 211  Q
    ||||||||||| ||||||| |||| | || || ||||||| ||||||  ||||||||||||  |||||||||||||| | ||||| ||||    
T  20662164 ttcattttgatacatattttagataatcaaatctgaacatattttcaaagttgagaagcagttaaaattttcaaaggatcacaattcaaa 20662075  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 130
Target Start/End: Complemental strand, 19993713 - 19993621
Alignment:
Q  38 tttgtgtcatctactctatcccttaactcctttgtttgatagttcaaaagtaagtacaaccgtccaatctcttcttatatcaaattcattttg 130  Q
    |||| ||||||| |||||||||||||||  | | ||||| |||||| ||| ||| |||  |  |||||||| |||| ||||||||||||||||    
T  19993713 tttgagtcatcttctctatcccttaacttttatatttgacagttcataagcaagcacattcaaccaatctcatcttgtatcaaattcattttg 19993621  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 191
Target Start/End: Original strand, 37488954 - 37489046
Alignment:
Q  100 tccaatctcttcttatatcaaattcattttgatccatatttcagatcaccaga-tttgaacatcttttcacggttgagaagcagccaaaattt 191  Q
    ||||||||| ||  ||||||||||||||||||| ||||||||| || | || | |||||| ||||| |||  ||||||||| |||| ||||||    
T  37488954 tccaatctcgtcaaatatcaaattcattttgatacatatttcatattagcaaattttgaagatcttctcaaagttgagaagtagcccaaattt 37489046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 173
Target Start/End: Complemental strand, 33699749 - 33699582
Alignment:
Q  5 actagcccaattagggtgaagcagtataacttatttgtgtcatctactctatcccttaactcctttgtttgatagttcaaaagtaagtacaaccgtccaa 104  Q
    ||||||| | |||||||||| |  |||||  |||||||||||||| || ||||||||||||  | | |||||||||||| ||| ||  |||     ||||    
T  33699749 actagcctagttagggtgaacctatataatatatttgtgtcatcttctttatcccttaactt-tatatttgatagttcagaagcaaacacattaaaccaa 33699651  T
Q  105 tctcttcttatatcaaattcattttgatccatatttcagatcaccagatttgaacatcttttcacggtt 173  Q
    ||||||||| ||||||||| |||||||| || | ||||||||| || || |||||||||| ||| ||||    
T  33699650 tctcttcttgtatcaaatttattttgatacaaacttcagatcatcatatctgaacatcttctcaaggtt 33699582  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 41 - 87
Target Start/End: Complemental strand, 25427468 - 25427422
Alignment:
Q  41 gtgtcatctactctatcccttaactcctttgtttgatagttcaaaag 87  Q
    |||||||||  ||||||||||||||||||| ||||||||||||||||    
T  25427468 gtgtcatcttgtctatcccttaactcctttatttgatagttcaaaag 25427422  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 122 - 198
Target Start/End: Original strand, 20186033 - 20186112
Alignment:
Q  122 ttcattttgatccatatttcagatcaccagatttgaacatcttttcacggttgagaagcagc---caaaattttcaaagg 198  Q
    ||||||||||| ||||||| |||| | || || |||||||||||||| |||| |||||||||   |||||||||||||||    
T  20186033 ttcattttgatacatattttagataatcaaatctgaacatcttttcaaggtttagaagcagcagtcaaaattttcaaagg 20186112  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 16976157 - 16976205
Alignment:
Q  39 ttgtgtcatctactctatcccttaactcctttgtttgatagttcaaaag 87  Q
    ||||||||||| ||||||| |||||||| ||| ||||||||||||||||    
T  16976157 ttgtgtcatcttctctatctcttaactcttttatttgatagttcaaaag 16976205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 85
Target Start/End: Complemental strand, 35395081 - 35395026
Alignment:
Q  30 ataacttatttgtgtcatctactctatcccttaactcctttgtttgatagttcaaa 85  Q
    |||||||  ||||||||||| || || |||||||||||||| ||||||||||||||    
T  35395081 ataactttattgtgtcatcttctttaccccttaactcctttatttgatagttcaaa 35395026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 142
Target Start/End: Original strand, 17622277 - 17622318
Alignment:
Q  101 ccaatctcttcttatatcaaattcattttgatccatatttca 142  Q
    ||||||||||||| |||||||||||||||||| |||| ||||    
T  17622277 ccaatctcttcttttatcaaattcattttgatacatacttca 17622318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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