View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21375_high_15 (Length: 217)
Name: NF21375_high_15
Description: NF21375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21375_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-100; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 7 - 198
Target Start/End: Complemental strand, 54643863 - 54643672
Alignment:
| Q |
7 |
cacagacagagtttaaaatgtgaaacttttcttttcaatcatgattaatgttgtatctatctacttctatatacatttgtctcaacatacccctggcagt |
106 |
Q |
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| T |
54643863 |
cacagacagagtataaattgtgaaacttttcttttcaatcatgattaatgttgtatctatctacttctatatacatttgtctcaacatacccctggcagt |
54643764 |
T |
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| Q |
107 |
tccttgattcaaagcatttcctagagtaagtattgtttgcataattctcttcaatttgacagaattcctgatctgaaaaagaaaatattatc |
198 |
Q |
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| T |
54643763 |
tccttgattcaaagcatttcctagagtaagtattgtttgcataattctcttcaatttgacagaattcctgatctgaaaaagaaaatattatc |
54643672 |
T |
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Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 102 - 182
Target Start/End: Complemental strand, 3242408 - 3242328
Alignment:
| Q |
102 |
gcagttccttgattcaaagcatttcctagagtaagtattgtttgcataattctcttcaatttgacagaattcctgatctga |
182 |
Q |
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|||||||| |||||||||||||| || |||| ||| || || ||||| ||||| ||||||||||| |||||||| |||||| |
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| T |
3242408 |
gcagttccatgattcaaagcattgccaagagaaagaatggtctgcatgattcttttcaatttgaccgaattccttatctga |
3242328 |
T |
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