View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21375_high_4 (Length: 558)

Name: NF21375_high_4
Description: NF21375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21375_high_4
NF21375_high_4
[»] chr4 (10 HSPs)
chr4 (18-550)||(26646973-26647518)
chr4 (17-253)||(13669681-13669902)
chr4 (17-253)||(13682538-13682759)
chr4 (17-131)||(13689216-13689327)
chr4 (281-327)||(13669607-13669653)
chr4 (281-327)||(13682464-13682510)
chr4 (53-131)||(13687264-13687342)
chr4 (18-76)||(22188309-22188367)
chr4 (183-227)||(13687186-13687230)
chr4 (183-227)||(13689138-13689182)
[»] chr8 (3 HSPs)
chr8 (18-452)||(37001816-37002241)
chr8 (18-424)||(36992099-36992500)
chr8 (451-550)||(37002274-37002373)
[»] chr7 (2 HSPs)
chr7 (281-354)||(8596984-8597057)
chr7 (202-256)||(8596901-8596959)
[»] chr3 (2 HSPs)
chr3 (454-538)||(27442791-27442874)
chr3 (454-538)||(27445947-27446030)
[»] chr1 (1 HSPs)
chr1 (454-538)||(12796262-12796345)


Alignment Details
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 18 - 550
Target Start/End: Original strand, 26646973 - 26647518
Alignment:
Q  18 attgttagcctttattgattcataaccatcgtataatatctccattagcaaaggagatgtcacaacaccatctnnnnnnnnttgatgcaccaaggcttcc 117  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||        || ||||||||||||||||    
T  26646973 attgttagcctttattgattcataaccatcgcataatatctccattagcaaaggagatgtcacaacaccatctataaaaaattcatgcaccaaggcttcc 26647072  T
Q  118 ttaattacatcttccttttcccaaatcattctgttcattgaacttgtgccactttctttcatttctttcatgaaagtacaaaatctgcaaatattgaaaa 217  Q
    |||||||||||||||||||||| ||||||| ||||| |||||||| ||||||||||||||||         |||||||||||||||||||||||||||||    
T  26647073 ttaattacatcttccttttcccgaatcattatgttcgttgaacttttgccactttctttcat---------gaaagtacaaaatctgcaaatattgaaaa 26647163  T
Q  218 atcatgttagttaattagcaaacaaaaaacttgagggagcgtgacgcccgnnnnnnnnnnnnn--gaataacaaaatatgggtttcaaaatttcatttct 315  Q
    |||||||||||||||||||| |||||||||||||||||| ||||||||||               ||||||||||| |||||||||||||||||||||||    
T  26647164 atcatgttagttaattagcagacaaaaaacttgagggagtgtgacgcccgttttttttttttgttgaataacaaaacatgggtttcaaaatttcatttct 26647263  T
Q  316 cataaattaagaatatcacatttaaattcacaacatttgtacaacatagacttctacaaaagcatcaaatacaaacttagactcctacaacgtttgtaca 415  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||||| |||||    
T  26647264 cataaattaagaatatcacatttaaattcacaacatttgtacaacatagactcctacaaaagcataaaatacaaacttagactcctgcaacgttggtaca 26647363  T
Q  416 acatctgtactgttgaaactgatttacttagctat---------------------attattcctatttctaaggaagtgccagtggaattgacttagtc 494  Q
    |||| ||||||||||||| ||||||||||||||||                     ||||||||||||||||||||||||||||||||||||||||||||    
T  26647364 acatttgtactgttgaaa-tgatttacttagctatattgttcctatcctgtaattaattattcctatttctaaggaagtgccagtggaattgacttagtc 26647462  T
Q  495 cttccacaattcacgttttagtcaatggagtcattttatttagtggttttcatctc 550  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26647463 cttccacaattcacgttttagtcaatggagtcattttatttagtggttttcatctc 26647518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 17 - 253
Target Start/End: Complemental strand, 13669902 - 13669681
Alignment:
Q  17 cattgttagcctttattgattcataaccatcgtataatatctccattagcaaaggagatgtcacaacaccatctnnnnnnnnttgatgcaccaaggcttc 116  Q
    |||||||||| | |||||||| | |||||| ||||||||| |||||||||||||||||||||||||||||| |          || | ||||||||||||    
T  13669902 cattgttagcatctattgatttacaaccattgtataatatgtccattagcaaaggagatgtcacaacaccaaccacaaaaaagtgctccaccaaggcttc 13669803  T
Q  117 cttaattacatcttccttttcccaaatcattctgttcattgaacttgtgccactttctttcatttctttcatgaaagtacaaaatctgcaaatattgaaa 216  Q
    ||||||||||||||| | |||||||| |||| || || ||    |||  | ||||| ||||||         ||||| ||| || |||||||||||||||    
T  13669802 cttaattacatcttcttcttcccaaaacatt-tggtcctt----ttgatc-actttttttcat---------gaaagcacagaagctgcaaatattgaaa 13669718  T
Q  217 aatcatgttagttaattagcaaacaaaaaacttgagg 253  Q
    |||||| ||||||||||||||||||||||| ||||||    
T  13669717 aatcatattagttaattagcaaacaaaaaatttgagg 13669681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 17 - 253
Target Start/End: Complemental strand, 13682759 - 13682538
Alignment:
Q  17 cattgttagcctttattgattcataaccatcgtataatatctccattagcaaaggagatgtcacaacaccatctnnnnnnnnttgatgcaccaaggcttc 116  Q
    |||||||||| | |||||||| | |||||| ||||||||| |||||||||||||||||||||||||||||| |          || | ||||||||||||    
T  13682759 cattgttagcatctattgatttacaaccattgtataatatgtccattagcaaaggagatgtcacaacaccaaccacaaaaaagtgctccaccaaggcttc 13682660  T
Q  117 cttaattacatcttccttttcccaaatcattctgttcattgaacttgtgccactttctttcatttctttcatgaaagtacaaaatctgcaaatattgaaa 216  Q
    ||||||||||||||| | |||||||| |||| || || ||    |||  | ||||| ||||||         ||||| ||| || |||||||||||||||    
T  13682659 cttaattacatcttcttcttcccaaaacatt-tggtcctt----ttgatc-actttttttcat---------gaaagcacagaagctgcaaatattgaaa 13682575  T
Q  217 aatcatgttagttaattagcaaacaaaaaacttgagg 253  Q
    |||||| ||||||||||||||||||||||| ||||||    
T  13682574 aatcatattagttaattagcaaacaaaaaatttgagg 13682538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 17 - 131
Target Start/End: Complemental strand, 13689327 - 13689216
Alignment:
Q  17 cattgttagcctttattgattcataaccatcgtataatatctccattagcaaaggagatgtcacaacaccatctnnnnnnnnttgatgcaccaaggcttc 116  Q
    |||||||||| | |||||||| | |||||| |||||   | |||||||||||||||||||||||||||||||||         || | ||||||||||||    
T  13689327 cattgttagcatctattgatttacaaccattgtata---tgtccattagcaaaggagatgtcacaacaccatctagaaaaaagtgctccaccaaggcttc 13689231  T
Q  117 cttaattacatcttc 131  Q
    |||||||||||||||    
T  13689230 cttaattacatcttc 13689216  T

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Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 281 - 327
Target Start/End: Complemental strand, 13669653 - 13669607
Alignment:
Q  281 gaataacaaaatatgggtttcaaaatttcatttctcataaattaaga 327  Q
    |||||||| || |||||||||||||||||||||||||||||||||||    
T  13669653 gaataacagaacatgggtttcaaaatttcatttctcataaattaaga 13669607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 281 - 327
Target Start/End: Complemental strand, 13682510 - 13682464
Alignment:
Q  281 gaataacaaaatatgggtttcaaaatttcatttctcataaattaaga 327  Q
    |||||||| || |||||||||||||||||||||||||||||||||||    
T  13682510 gaataacagaacatgggtttcaaaatttcatttctcataaattaaga 13682464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 53 - 131
Target Start/End: Complemental strand, 13687342 - 13687264
Alignment:
Q  53 atatctccattagcaaaggagatgtcacaacaccatctnnnnnnnnttgatgcaccaaggcttccttaattacatcttc 131  Q
    |||| |||||||||||||||||||||||||||||||||         || | |||||||||||||||||||||||||||    
T  13687342 atatgtccattagcaaaggagatgtcacaacaccatctagaaaaaagtgctccaccaaggcttccttaattacatcttc 13687264  T

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Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 22188309 - 22188367
Alignment:
Q  18 attgttagcctttattgattcataaccatcgtataatatctccattagcaaaggagatg 76  Q
    ||||||||| |||||||||| |||||||| ||||||||| ||||||| |||||||||||    
T  22188309 attgttagcatttattgattgataaccattgtataatatgtccattatcaaaggagatg 22188367  T

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Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 227
Target Start/End: Complemental strand, 13687230 - 13687186
Alignment:
Q  183 tttcatgaaagtacaaaatctgcaaatattgaaaaatcatgttag 227  Q
    ||||||||||| ||| |||||||||||||||||||||||| ||||    
T  13687230 tttcatgaaagcacagaatctgcaaatattgaaaaatcatattag 13687186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 227
Target Start/End: Complemental strand, 13689182 - 13689138
Alignment:
Q  183 tttcatgaaagtacaaaatctgcaaatattgaaaaatcatgttag 227  Q
    ||||||||||| ||| |||||||||||||||||||||||| ||||    
T  13689182 tttcatgaaagcacagaatctgcaaatattgaaaaatcatattag 13689138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 211; Significance: 1e-115; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 18 - 452
Target Start/End: Original strand, 37001816 - 37002241
Alignment:
Q  18 attgttagcctttattgattcataaccatcgtataatatctccattagcaaaggagatgtcacaacaccatctnnnnnnnnttgatgcaccaaggcttcc 117  Q
    ||||| ||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||         || | |||||||||||||    
T  37001816 attgtcagcatttattgattgataaccattgtataatatctccattagcaaaggagatgtcacagcaccatctacaaagaagtgcttcaccaaggcttcc 37001915  T
Q  118 ttaattacatcttccttttcccaaatcattctgttcattgaacttgtgccactttctttcatttctttcatgaaagtacaaaatctgcaaatattgaaaa 217  Q
     ||||||||||||  |||||||||| ||||  || | ||||| ||  |||||||||||      ||   ||||||||||| |||||||||||||||||||    
T  37001916 ataattacatcttgtttttcccaaaacatttggtcctttgaaatttggccactttctt------ct---atgaaagtacagaatctgcaaatattgaaaa 37002006  T
Q  218 atcatgttagttaattagcaaacaaaaaacttgagggagcgtgacgcccgnnnnnnnnnnnnngaataacaaaatatgggtttcaaaatttcatttctca 317  Q
    ||||| ||||||||||||||||||||||| ||||||||| |||||| |||             ||||||||||| |||||||||||||||||||||||||    
T  37002007 atcatattagttaattagcaaacaaaaaatttgagggagtgtgacgaccgttttttttttgttgaataacaaaacatgggtttcaaaatttcatttctca 37002106  T
Q  318 taaattaagaatatcacatttaaattcacaacatttgtacaacatagacttctacaaaagcatcaaatacaaacttagactcctacaacgtttgtacaac 417  Q
    |||||||||| ||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  37002107 taaattaagagtataacatttaaattcacaacatttatacaacatagactcctacaaaagcatcaaatacaaacttagactcctgcaacgtttgtacaac 37002206  T
Q  418 atctgtactgttgaaactgatttacttagctatat 452  Q
    || ||||||||||||||||||||||||||||||||    
T  37002207 atttgtactgttgaaactgatttacttagctatat 37002241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 18 - 424
Target Start/End: Original strand, 36992099 - 36992500
Alignment:
Q  18 attgttagcctttattgattcataaccatcgtataatatctccattagcaaaggagatgtcacaacaccatctnnnnnnnnttgatgcaccaaggcttcc 117  Q
    ||||| ||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||         || | |||||||||||||    
T  36992099 attgtcagcatttattgattgataaccattgtataatatctccattagcaaaggagatgtcacagcaccatctacaaagaagtgcttcaccaaggcttcc 36992198  T
Q  118 ttaattacatcttccttttcccaaatcattctgttcattgaacttgtgccactttctttcatttctttcatgaaagtacaaaatctgcaaatattgaaaa 217  Q
     ||||||||||||  |||||||||| ||||  || | ||||| ||  | |||||||||      ||   ||||||||||| |||||||||||||||||||    
T  36992199 ataattacatcttgtttttcccaaaacatttggtcctttgaaatttggtcactttctt------ct---atgaaagtacagaatctgcaaatattgaaaa 36992289  T
Q  218 atcatgttagttaattagcaaacaaaaaacttgagggagcgtgacgcccgnnnnnnnnnnnnng------aataacaaaatatgggtttcaaaatttcat 311  Q
    ||||| ||||||||||||||||||||||  |||||  || ||||||||||                    |||||||||| |||||||||||||||||||    
T  36992290 atcatattagttaattagcaaacaaaaagtttgag--agtgtgacgcccgatttttttttttttttttttaataacaaaacatgggtttcaaaatttcat 36992387  T
Q  312 ttctcataaattaagaatatcacatttaaattcacaacatttgtacaacatagacttctacaaaagcatcaaatacaaacttagactcctacaacgtttg 411  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||    
T  36992388 ttctcataaattaagagtatcacatttaaattcacaacatttgtacaacatagactcctacaaaagcatcaaatacaaacttagactcctgcaacgtttg 36992487  T
Q  412 tacaacatctgta 424  Q
    |||||||| ||||    
T  36992488 tacaacatttgta 36992500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 451 - 550
Target Start/End: Original strand, 37002274 - 37002373
Alignment:
Q  451 attattcctatttctaaggaagtgccagtggaattgacttagtccttccacaattcacgttttagtcaatggagtcattttatttagtggttttcatctc 550  Q
    ||||||||||||| | ||| ||||| | |||||||||||||||  ||||||||||||| ||| ||| | || |||||||||||||||| |||||||||||    
T  37002274 attattcctatttgttagggagtgctaatggaattgacttagtgtttccacaattcacatttaagttagtgtagtcattttatttagttgttttcatctc 37002373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 281 - 354
Target Start/End: Original strand, 8596984 - 8597057
Alignment:
Q  281 gaataacaaaatatgggtttcaaaatttcatttctcataaattaagaatatcacatttaaattcacaacatttg 354  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  8596984 gaataacaaaacatgggttccaaaatttcatttctcataaattaagagtatcacatttaaattcacaacatttg 8597057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 256
Target Start/End: Original strand, 8596901 - 8596959
Alignment:
Q  202 ctgcaaatattgaaaaatcat----gttagttaattagcaaacaaaaaacttgagggag 256  Q
    |||||||||||||||||||||     ||||||||||||||||||||||| || ||||||    
T  8596901 ctgcaaatattgaaaaatcatattaattagttaattagcaaacaaaaaattttagggag 8596959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 454 - 538
Target Start/End: Original strand, 27442791 - 27442874
Alignment:
Q  454 attcctatttctaaggaagtgccagtggaattgacttagtccttccacaattcacgttttagtcaatggagtcattttatttagt 538  Q
    |||||||||| | |||||| |  ||||| |||||||||||  |||||| ||||||| |||||| | |||||||||||| ||||||    
T  27442791 attcctatttgttaggaagggatagtgggattgacttagttgttccactattcacg-tttagttagtggagtcattttgtttagt 27442874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 454 - 538
Target Start/End: Original strand, 27445947 - 27446030
Alignment:
Q  454 attcctatttctaaggaagtgccagtggaattgacttagtccttccacaattcacgttttagtcaatggagtcattttatttagt 538  Q
    |||||||||| | |||||| |  ||||| |||||||||||  |||||| ||||||| |||||| | |||||||||||| ||||||    
T  27445947 attcctatttgttaggaagggatagtgggattgacttagttgttccactattcacg-tttagttagtggagtcattttgtttagt 27446030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 454 - 538
Target Start/End: Original strand, 12796262 - 12796345
Alignment:
Q  454 attcctatttctaaggaagtgccagtggaattgacttagtccttccacaattcacgttttagtcaatggagtcattttatttagt 538  Q
    |||||||||| | |||||| |  ||||| |||||||||||  |||||| ||||||| |||||| | |||||||||||| ||||||    
T  12796262 attcctatttgttaggaagggatagtgggattgacttagttgttccactattcacg-tttagttagtggagtcattttgtttagt 12796345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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