View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21375_low_10 (Length: 310)
Name: NF21375_low_10
Description: NF21375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21375_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 71 - 159
Target Start/End: Complemental strand, 2377280 - 2377195
Alignment:
| Q |
71 |
gatacttcaacatcgttttctcgtgttaagaagggtttccttatgcatgtttccccccaacattgtcaaagctaatgtaaatccctttg |
159 |
Q |
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| T |
2377280 |
gatacttcaaca-cgttttctcttgttaagaagggtttccttatgcatgtt--cccccaacattgtcaaagttaatgtcaatgcctttg |
2377195 |
T |
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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 2377374 - 2377301
Alignment:
| Q |
1 |
ttgtgtaatttcggcactaagcaagaggtaaagttgta-tatcctgcacacgaatgagtgccaaactgttggat |
73 |
Q |
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| T |
2377374 |
ttgtgtaatttcggcactgagctagaggtaaagttgcaccagccagcacacgaatgagtgccaaactgtaggat |
2377301 |
T |
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Target: chr3 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 73 - 159
Target Start/End: Original strand, 1522745 - 1522829
Alignment:
| Q |
73 |
tacttcaacatcgttttctcgtgttaagaagggtttccttatgcatgtttccccccaacattgtcaaagctaatgtaaatccctttg |
159 |
Q |
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| T |
1522745 |
tacttcaacaacattttctcgtgttaataagggtttccttatgcatgtt--cccccaacattgtcaaagttaatgtcaatgcctttg |
1522829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 149 - 208
Target Start/End: Original strand, 1523727 - 1523785
Alignment:
| Q |
149 |
aaatccctttgaagcttccaagaatggcctagggagcaaaggaagtcctttcaacagaca |
208 |
Q |
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| T |
1523727 |
aaatccctttgaagcttccaagaatgacctagggagc-aaggaagtcctttcaacagaca |
1523785 |
T |
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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 35726374 - 35726310
Alignment:
| Q |
1 |
ttgtgtaatttcggcactaagcaagaggtaaagttgtat-atcctgcacacgaatgagtgccaaa |
64 |
Q |
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| T |
35726374 |
ttgtgtagtttcggcgctgagcaagaggtaaagttgcatcagcctgcatacgaatgagtgccaaa |
35726310 |
T |
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