View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21375_low_12 (Length: 295)

Name: NF21375_low_12
Description: NF21375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21375_low_12
NF21375_low_12
[»] chr4 (2 HSPs)
chr4 (1-225)||(35798346-35798569)
chr4 (5-108)||(48420685-48420788)
[»] chr5 (2 HSPs)
chr5 (1-108)||(35567727-35567834)
chr5 (4-73)||(33766303-33766372)
[»] chr6 (3 HSPs)
chr6 (5-106)||(23629126-23629227)
chr6 (66-107)||(2589571-2589612)
chr6 (19-86)||(2621107-2621172)
[»] chr1 (5 HSPs)
chr1 (1-89)||(21631353-21631437)
chr1 (4-107)||(36801877-36801978)
chr1 (59-107)||(23615538-23615586)
chr1 (59-107)||(23646834-23646882)
chr1 (40-88)||(25081388-25081436)
[»] chr2 (3 HSPs)
chr2 (1-107)||(16556392-16556495)
chr2 (4-104)||(44093669-44093765)
chr2 (4-91)||(26754279-26754364)
[»] chr7 (1 HSPs)
chr7 (17-104)||(23549397-23549482)
[»] scaffold0648 (1 HSPs)
scaffold0648 (18-89)||(1094-1163)
[»] scaffold0271 (1 HSPs)
scaffold0271 (18-89)||(15474-15543)
[»] chr3 (3 HSPs)
chr3 (5-108)||(35558723-35558824)
chr3 (19-89)||(38143513-38143581)
chr3 (1-103)||(17357270-17357368)
[»] chr8 (2 HSPs)
chr8 (38-90)||(25009092-25009144)
chr8 (27-82)||(34514800-34514855)


Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 35798346 - 35798569
Alignment:
Q  1 atggatttgaatgatatgactaaataatttttctttaaattttttatatttgtgtgtctgtgaccaaataaatttgatttgggtttgtgcttatggaaga 100  Q
    ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||  ||||||||||||||||||||||  ||||||||||||||||||    
T  35798346 atggatttgaatgatgtgactaaataattttt-tttaaattttttatatttgtgtgagtgtgaccaaataaatttgatttaagtttgtgcttatggaaga 35798444  T
Q  101 attgctctttcgctagactcaactctcgttgttatctcattgtatctttattcaactcatctatttatccgtcaaagaataaaggaaaaaagaatttggg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35798445 attgctctttcgctagactcaactctcgttgttatctcattgtatttttattcaactcatctatttatccgtcaaagaataaaggaaaaaagaatttggg 35798544  T
Q  201 agaaaatttcaaaatcatacatcac 225  Q
    |||||||||||||||||||||||||    
T  35798545 agaaaatttcaaaatcatacatcac 35798569  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 108
Target Start/End: Complemental strand, 48420788 - 48420685
Alignment:
Q  5 atttgaatgatatgactaaataatttttctttaaattttttatatttgtgtgtctgtgaccaaataaatttgatttgggtttgtgcttatggaagaattg 104  Q
    |||| |||||| | |||||||||||||||||| |||||| || |||||||| | || | | |||||||||| ||||  ||||||||  ||| ||||||||    
T  48420788 atttaaatgatgtaactaaataatttttcttttaattttctacatttgtgtatgtgcgtctaaataaatttaatttatgtttgtgcccatgtaagaattg 48420689  T
Q  105 ctct 108  Q
    ||||    
T  48420688 ctct 48420685  T

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Target: chr5 (Bit Score: 76; Significance: 4e-35; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 35567834 - 35567727
Alignment:
Q  1 atggatttgaatgatatgactaaataatttttctttaaattttttatatttgtgtgtctgtgaccaaataaatttgatttgggtttgtgcttatggaaga 100  Q
    ||||||||||||||| ||| ||||||||||||||||||||||| || |||||||| | |||||||||||||||||||||||||||||||| |||| ||||    
T  35567834 atggatttgaatgatgtgattaaataatttttctttaaattttatacatttgtgtatgtgtgaccaaataaatttgatttgggtttgtgcctatgtaaga 35567735  T
Q  101 attgctct 108  Q
    ||||||||    
T  35567734 attgctct 35567727  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 33766303 - 33766372
Alignment:
Q  4 gatttgaatgatatgactaaataatttttctttaaattttttatatttgtgtgtctgtgaccaaataaat 73  Q
    ||||| ||||||||||| ||||||||| ||||| ||||||||| |||||||||| || | ||||||||||    
T  33766303 gatttaaatgatatgaccaaataatttctcttttaattttttacatttgtgtgtgtgcgtccaaataaat 33766372  T

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Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 5 - 106
Target Start/End: Complemental strand, 23629227 - 23629126
Alignment:
Q  5 atttgaatgatatgactaaataatttttctttaaattttttatatttgtgtgtctgtgaccaaataaatttgatttgggtttgtgcttatggaagaattg 104  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||| ||| | ||||||||||||||||| |||||||||||||  |||| ||||||||    
T  23629227 atttgaatgatgtgattaaataatttttctttaaattttttatatttatgtatgtgtgaccaaataaatttaatttgggtttgtgtctatgtaagaattg 23629128  T
Q  105 ct 106  Q
    ||    
T  23629127 ct 23629126  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 107
Target Start/End: Original strand, 2589571 - 2589612
Alignment:
Q  66 aaataaatttgatttgggtttgtgcttatggaagaattgctc 107  Q
    |||||||||||||||||||||||||||| | || ||||||||    
T  2589571 aaataaatttgatttgggtttgtgcttaagtaaaaattgctc 2589612  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 2621107 - 2621172
Alignment:
Q  19 actaaataatttttctttaaattttttatatttgtgtgtctgtgaccaaataaatttgatttgggttt 86  Q
    ||||||| |||| ||||| ||||||||| ||||||||||  ||  |||||||||||| ||||||||||    
T  2621107 actaaatcatttctcttttaattttttacatttgtgtgt--gtacccaaataaatttcatttgggttt 2621172  T

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Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 21631437 - 21631353
Alignment:
Q  1 atggatttgaatgatatgactaaataatttttctttaaattttttatatttgtgtgtctgtgaccaaataaatttgatttgggtttgtg 89  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||  ||||||    |||||||||||||||||||||||||||||||    
T  21631437 atggatttgaatgatgtgactaaataatttttctttaaattttttacgtttgtg----tgtgaccaaataaatttgatttgggtttgtg 21631353  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 4 - 107
Target Start/End: Complemental strand, 36801978 - 36801877
Alignment:
Q  4 gatttgaatgatatgactaaataatttttctttaaattttttatatttgtgtgtctgtgaccaaataaatttgatttgggtttgtgcttatggaagaatt 103  Q
    ||||| |||||| |||||||||| ||| ||||||||||||||| |||||||||  || | |||||||||||||||||||||||||||  ||  |||||||    
T  36801978 gatttaaatgatgtgactaaatactttctctttaaattttttacatttgtgtg--tgcgcccaaataaatttgatttgggtttgtgcccatctaagaatt 36801881  T
Q  104 gctc 107  Q
    ||||    
T  36801880 gctc 36801877  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 107
Target Start/End: Original strand, 23615538 - 23615586
Alignment:
Q  59 tgtgaccaaataaatttgatttgggtttgtgcttatggaagaattgctc 107  Q
    |||| |||||||||||| |||||||||||||| ||||||||| ||||||    
T  23615538 tgtgtccaaataaattttatttgggtttgtgcctatggaagacttgctc 23615586  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 107
Target Start/End: Original strand, 23646834 - 23646882
Alignment:
Q  59 tgtgaccaaataaatttgatttgggtttgtgcttatggaagaattgctc 107  Q
    |||| |||||||||||| |||||||||||||| ||||||||| ||||||    
T  23646834 tgtgtccaaataaattttatttgggtttgtgcctatggaagacttgctc 23646882  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 88
Target Start/End: Original strand, 25081388 - 25081436
Alignment:
Q  40 ttttttatatttgtgtgtctgtgaccaaataaatttgatttgggtttgt 88  Q
    ||||||| |||||||| | |||| |||||||||||||||||||||||||    
T  25081388 ttttttacatttgtgtatgtgtgcccaaataaatttgatttgggtttgt 25081436  T

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Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 16556495 - 16556392
Alignment:
Q  1 atggatttgaatgatatgactaaataatttttctttaaattttttatatttgtgtgtctgtgaccaaataaatttgatttgggtttgtgcttatggaaga 100  Q
    ||||||||||||||| |||||||||||||||||||| ||||||||| | |||||||  ||||| ||||||||||| ||||| |||||||| |||| ||||    
T  16556495 atggatttgaatgatgtgactaaataatttttcttt-aattttttacaattgtgtg--tgtgaacaaataaatttaatttgtgtttgtgcctatgtaaga 16556399  T
Q  101 attgctc 107  Q
    |||||||    
T  16556398 attgctc 16556392  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 104
Target Start/End: Complemental strand, 44093765 - 44093669
Alignment:
Q  4 gatttgaatgatatgactaaataatttttctttaaattttttatatttgtgtgtctgtgaccaaataaatttgatttgggtttgtgcttatggaagaatt 103  Q
    ||||| |||||| | |||||||||||||||||| ||||||||| ||||||||||    |  ||||||||||| ||||| |||||||| |||| |||||||    
T  44093765 gatttaaatgatgttactaaataatttttcttttaattttttacatttgtgtgt----gctcaaataaatttaatttgagtttgtgcctatgtaagaatt 44093670  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 91
Target Start/End: Complemental strand, 26754364 - 26754279
Alignment:
Q  4 gatttgaatgatatgactaaataatttttctttaaattttttatatttgtgtgtctgtgaccaaataaatttgatttgggtttgtgct 91  Q
    ||||| || ||| ||||||||||| || ||||| |||||||||||||| ||||  |||| |||||| ||||| |||| | ||||||||    
T  26754364 gatttaaacgatgtgactaaataacttctcttttaattttttatatttatgtg--tgtgtccaaatcaatttaatttagatttgtgct 26754279  T

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Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 17 - 104
Target Start/End: Original strand, 23549397 - 23549482
Alignment:
Q  17 tgactaaataatttttctttaaattttttatatttgtgtgtctgtgaccaaataaatttgatttgggtttgtgcttatggaagaattg 104  Q
    |||||||||||||||||||| ||||||| |||||||||||  |||| |||||| ||||||||||||||||||||  ||| ||||||||    
T  23549397 tgactaaataatttttcttttaatttttgatatttgtgtg--tgtgcccaaatcaatttgatttgggtttgtgcccatgtaagaattg 23549482  T

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Target: scaffold0648 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0648
Description:

Target: scaffold0648; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 1094 - 1163
Alignment:
Q  18 gactaaataatttttctttaaattttttatatttgtgtgtctgtgaccaaataaatttgatttgggtttgtg 89  Q
    ||||||||||||||||||||||||| ||||||| |||||  |||||  ||||||||||||||||||||||||    
T  1094 gactaaataatttttctttaaatttattatattagtgtg--tgtgaggaaataaatttgatttgggtttgtg 1163  T

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Target: scaffold0271 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0271
Description:

Target: scaffold0271; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 15474 - 15543
Alignment:
Q  18 gactaaataatttttctttaaattttttatatttgtgtgtctgtgaccaaataaatttgatttgggtttgtg 89  Q
    ||||||||||||||||||||||||| ||||||| |||||  |||||  ||||||||||||||||||||||||    
T  15474 gactaaataatttttctttaaatttattatattagtgtg--tgtgaggaaataaatttgatttgggtttgtg 15543  T

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Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 5 - 108
Target Start/End: Original strand, 35558723 - 35558824
Alignment:
Q  5 atttgaatgatatgactaaataatttttctttaaattttttatatttgtgtgtctgtgaccaaataaatttgatttgggtttgtgcttatggaagaattg 104  Q
    |||| |||||| | |||||||||||||||||| ||||||||| ||||||||||  |||   |||||||||||||||||||||||||  | | ||||||||    
T  35558723 atttaaatgatgtaactaaataatttttcttttaattttttacatttgtgtgtgcgtg--taaataaatttgatttgggtttgtgcccacgtaagaattg 35558820  T
Q  105 ctct 108  Q
    ||||    
T  35558821 ctct 35558824  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 38143513 - 38143581
Alignment:
Q  19 actaaataatttttctttaaattttttatatttgtgtgtctgtgaccaaataaatttgatttgggtttgtg 89  Q
    |||||||||||||||||||||||| ||| |||||| ||  |||||||||||||||||||||| | ||||||    
T  38143513 actaaataatttttctttaaatttattacatttgtatg--tgtgaccaaataaatttgatttagatttgtg 38143581  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 17357270 - 17357368
Alignment:
Q  1 atggatttgaatgatatgactaaataatttttctttaaattttttatatttgtgtgtctgtgaccaaataaatttgatttgggtttgtgcttatggaaga 100  Q
    |||||||| |||||| |||||||||| ||||| |||  |||||  | ||||||||||  || | ||||||||||||||||| |||||||| |||| ||||    
T  17357270 atggatttaaatgatgtgactaaatattttttatttttatttt--acatttgtgtgt--gttatcaaataaatttgatttgagtttgtgcctatgtaaga 17357365  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 90
Target Start/End: Complemental strand, 25009144 - 25009092
Alignment:
Q  38 aattttttatatttgtgtgtctgtgaccaaataaatttgatttgggtttgtgc 90  Q
    ||||||||| ||||  |||| |||| |||||||||||||||||||||||||||    
T  25009144 aattttttacatttaagtgtgtgtgcccaaataaatttgatttgggtttgtgc 25009092  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 27 - 82
Target Start/End: Original strand, 34514800 - 34514855
Alignment:
Q  27 atttttctttaaattttttatatttgtgtgtctgtgaccaaataaatttgatttgg 82  Q
    |||||||||| |||||||||||||| ||||| |||  |||||||||||| ||||||    
T  34514800 atttttcttttaattttttatatttatgtgtatgtccccaaataaattttatttgg 34514855  T

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