View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21375_low_15 (Length: 273)
Name: NF21375_low_15
Description: NF21375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21375_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 25 - 264
Target Start/End: Original strand, 34710791 - 34711030
Alignment:
| Q |
25 |
ggaaaacaaaccttgagaatatcaggtgtaactatgctaggaccccttcctgaaaaagaggcaacaacaagtgccaaagtattttctgactcaattgtct |
124 |
Q |
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| T |
34710791 |
ggaaaacaaaccttgagaatatcaggtgtaactatgctaggaccccttgctgaaaaagaggcaacaacgggtgtcaaagtattttctgactcagttgtct |
34710890 |
T |
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| Q |
125 |
taaagatggttgcagttggagtcctgtaaattgattaatgcaagaaattttagataaatgtgattgtctcaattatggttaagtgtatatggaacttgta |
224 |
Q |
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| T |
34710891 |
taaagatggttgcagttggagtcctgtaaattgattaatgcaagaaattttagataaatgtgattgtctcaattatggttaagtgtatatggaacttgta |
34710990 |
T |
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| Q |
225 |
tttgataccttgtagaatatatgtatttatgtatattctt |
264 |
Q |
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| T |
34710991 |
tttgataccttgtagaatatatgtatttatgtattttctt |
34711030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 36 - 258
Target Start/End: Original strand, 29435008 - 29435230
Alignment:
| Q |
36 |
cttgagaatatcaggtgtaactatgctaggaccccttcctgaaaaagaggcaacaacaagtgccaaagtattttctgactcaattgtcttaaagatggtt |
135 |
Q |
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| T |
29435008 |
cttgagaatgtcaggtgtaactatgctacgaccccttaatgaaaaagaggcaaccatgggtgccaaggtattttctaactcatttttcttaaagattgtt |
29435107 |
T |
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| Q |
136 |
gcagttggagtcctgtaaattgattaatgcaagaaattttagataaatgtgattgtctcaattatggttaagtgtatatggaacttgtatttgatacctt |
235 |
Q |
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| T |
29435108 |
gcacttgaagtcctgcaaattgattaatgcagtaaattttacataaatgtgattctctaaattattgctaagtgtacatggaacttgcacttgatacctt |
29435207 |
T |
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| Q |
236 |
gtagaatatatgtatttatgtat |
258 |
Q |
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| T |
29435208 |
gtagagtatatatatttatgtat |
29435230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 59 - 260
Target Start/End: Original strand, 27971154 - 27971354
Alignment:
| Q |
59 |
tgctaggaccccttcctgaaaaagaggcaacaacaagtgccaaagtattttctgactcaattgtcttaaagatggttgcagttggagtcctgtaaattga |
158 |
Q |
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| T |
27971154 |
tgcttggaccccttgatgagaaagaagcaacaacaggtgccaaagtatctaataactcattgctcttgaatatagttgcaattggattcctgtaaattga |
27971253 |
T |
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| Q |
159 |
ttaatgcaagaaattttagataaatgtgattgtctcaattatggttaagtgtatatggaacttgtat-ttgataccttgtagaatatatgtatttatgta |
257 |
Q |
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| T |
27971254 |
ttaatataataattattagataattgtgggtctccatattattgttaa-tgtatgtgaaactt-tatctcgataccttgtagaacgtatgtatttatgta |
27971351 |
T |
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| Q |
258 |
tat |
260 |
Q |
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||| |
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| T |
27971352 |
tat |
27971354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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