View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21375_low_2 (Length: 648)

Name: NF21375_low_2
Description: NF21375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21375_low_2
NF21375_low_2
[»] chr6 (12 HSPs)
chr6 (18-282)||(4611451-4611721)
chr6 (404-637)||(4611040-4611273)
chr6 (264-408)||(4611293-4611438)
chr6 (20-190)||(4515344-4515512)
chr6 (300-377)||(31265835-31265913)
chr6 (300-404)||(14312621-14312723)
chr6 (306-377)||(14306220-14306292)
chr6 (299-406)||(4238451-4238554)
chr6 (300-407)||(7301055-7301158)
chr6 (300-369)||(3604573-3604643)
chr6 (574-636)||(4515685-4515747)
chr6 (300-376)||(15081480-15081557)
[»] scaffold0006 (1 HSPs)
scaffold0006 (300-377)||(229879-229956)
[»] chr7 (23 HSPs)
chr7 (300-377)||(27234559-27234636)
chr7 (277-366)||(11616629-11616723)
chr7 (300-377)||(37490591-37490669)
chr7 (302-377)||(33584619-33584695)
chr7 (300-407)||(30463045-30463150)
chr7 (300-377)||(47454060-47454138)
chr7 (300-402)||(5724681-5724780)
chr7 (249-356)||(45890775-45890888)
chr7 (307-407)||(31581423-31581521)
chr7 (300-377)||(2846649-2846727)
chr7 (300-369)||(5083445-5083515)
chr7 (305-377)||(38181852-38181925)
chr7 (300-356)||(44604451-44604508)
chr7 (300-377)||(7425850-7425929)
chr7 (307-407)||(23703945-23704043)
chr7 (323-366)||(29434577-29434620)
chr7 (303-361)||(32776055-32776114)
chr7 (300-366)||(36117729-36117796)
chr7 (300-377)||(2842025-2842103)
chr7 (300-377)||(29257603-29257681)
chr7 (300-376)||(8150016-8150092)
chr7 (300-377)||(49100476-49100553)
chr7 (311-362)||(29645218-29645270)
[»] chr8 (28 HSPs)
chr8 (277-377)||(5392105-5392211)
chr8 (300-403)||(2349383-2349485)
chr8 (302-377)||(45425541-45425617)
chr8 (300-377)||(44790395-44790473)
chr8 (274-376)||(4480412-4480519)
chr8 (300-366)||(5962446-5962513)
chr8 (300-377)||(9014759-9014837)
chr8 (300-377)||(29730869-29730947)
chr8 (300-366)||(12653754-12653821)
chr8 (299-377)||(31132786-31132865)
chr8 (300-407)||(22324928-22325033)
chr8 (300-361)||(39171615-39171677)
chr8 (300-366)||(38252410-38252478)
chr8 (304-366)||(21587344-21587403)
chr8 (300-354)||(28802846-28802901)
chr8 (300-404)||(32967250-32967352)
chr8 (300-365)||(139090-139156)
chr8 (300-377)||(7258340-7258418)
chr8 (300-361)||(32241397-32241459)
chr8 (300-377)||(33190882-33190960)
chr8 (300-406)||(37219734-37219841)
chr8 (300-377)||(42412356-42412434)
chr8 (300-404)||(45197643-45197744)
chr8 (305-403)||(34133160-34133256)
chr8 (329-361)||(8618200-8618232)
chr8 (279-377)||(27973633-27973737)
chr8 (279-377)||(28030902-28031006)
chr8 (306-361)||(31410587-31410643)
[»] chr4 (32 HSPs)
chr4 (304-377)||(4360385-4360459)
chr4 (300-377)||(18849732-18849810)
chr4 (304-366)||(283454-283517)
chr4 (300-404)||(38160125-38160227)
chr4 (300-377)||(8295085-8295163)
chr4 (249-377)||(22872303-22872439)
chr4 (300-378)||(42185769-42185848)
chr4 (300-377)||(28974362-28974440)
chr4 (323-377)||(41436537-41436591)
chr4 (405-451)||(49448763-49448809)
chr4 (300-377)||(49448897-49448975)
chr4 (300-377)||(49812285-49812363)
chr4 (300-377)||(54729457-54729535)
chr4 (300-377)||(4727577-4727654)
chr4 (274-353)||(17237123-17237208)
chr4 (300-406)||(41203767-41203871)
chr4 (300-356)||(49306664-49306721)
chr4 (304-366)||(39976371-39976430)
chr4 (405-473)||(44022018-44022085)
chr4 (300-378)||(4357622-4357701)
chr4 (323-378)||(33047547-33047602)
chr4 (300-366)||(35909546-35909613)
chr4 (300-362)||(38977063-38977126)
chr4 (300-377)||(26185238-26185316)
chr4 (300-361)||(30568735-30568797)
chr4 (300-377)||(39979836-39979914)
chr4 (300-377)||(41710117-41710195)
chr4 (329-366)||(3686078-3686115)
chr4 (324-381)||(28279889-28279946)
chr4 (300-356)||(42024174-42024231)
chr4 (330-366)||(27977214-27977250)
chr4 (279-377)||(52676978-52677082)
[»] chr3 (29 HSPs)
chr3 (247-404)||(53876351-53876511)
chr3 (300-366)||(9017868-9017935)
chr3 (300-377)||(39866526-39866604)
chr3 (300-377)||(43639489-43639567)
chr3 (300-377)||(54122197-54122275)
chr3 (300-378)||(5245467-5245546)
chr3 (274-366)||(2868641-2868739)
chr3 (300-377)||(11251100-11251178)
chr3 (249-377)||(17776911-17777045)
chr3 (249-377)||(19078212-19078346)
chr3 (300-377)||(21296476-21296554)
chr3 (300-353)||(26134676-26134730)
chr3 (300-377)||(33994713-33994791)
chr3 (323-407)||(48744288-48744369)
chr3 (271-366)||(10855061-10855162)
chr3 (300-366)||(32023073-32023141)
chr3 (300-402)||(32827277-32827377)
chr3 (323-403)||(41031605-41031685)
chr3 (300-359)||(39365010-39365071)
chr3 (250-377)||(14756032-14756165)
chr3 (330-404)||(54458313-54458384)
chr3 (304-366)||(36097632-36097695)
chr3 (300-361)||(8706218-8706280)
chr3 (300-361)||(9058105-9058167)
chr3 (300-361)||(54783035-54783097)
chr3 (300-361)||(55415412-55415474)
chr3 (300-356)||(1772079-1772136)
chr3 (300-363)||(49006267-49006331)
chr3 (302-349)||(54845491-54845539)
[»] chr2 (28 HSPs)
chr2 (300-377)||(28572264-28572341)
chr2 (300-404)||(23684991-23685093)
chr2 (300-403)||(30757541-30757642)
chr2 (300-404)||(28301466-28301568)
chr2 (300-377)||(2882041-2882119)
chr2 (300-407)||(24775781-24775886)
chr2 (274-377)||(43950390-43950499)
chr2 (247-361)||(28527036-28527156)
chr2 (300-366)||(15859318-15859385)
chr2 (300-366)||(36155580-36155647)
chr2 (300-354)||(40965093-40965148)
chr2 (300-377)||(565145-565223)
chr2 (300-377)||(2756730-2756808)
chr2 (300-377)||(3100456-3100534)
chr2 (323-377)||(18181210-18181264)
chr2 (305-366)||(28108353-28108415)
chr2 (300-403)||(28925821-28925922)
chr2 (300-407)||(43077699-43077804)
chr2 (300-377)||(7649949-7650026)
chr2 (300-356)||(33755334-33755391)
chr2 (300-377)||(13375161-13375240)
chr2 (300-404)||(37247857-37247959)
chr2 (300-361)||(5211931-5211993)
chr2 (300-381)||(36103274-36103356)
chr2 (300-354)||(41436158-41436212)
chr2 (300-377)||(44534456-44534534)
chr2 (302-404)||(435053-435153)
chr2 (413-486)||(5007686-5007759)
[»] chr1 (34 HSPs)
chr1 (307-404)||(17342860-17342955)
chr1 (300-404)||(32587797-32587899)
chr1 (300-403)||(50267412-50267513)
chr1 (300-377)||(52830388-52830466)
chr1 (301-407)||(26756005-26756109)
chr1 (300-407)||(28277009-28277117)
chr1 (300-366)||(32348285-32348352)
chr1 (248-361)||(49945004-49945123)
chr1 (299-377)||(51749156-51749235)
chr1 (300-377)||(3555529-3555607)
chr1 (300-377)||(42926190-42926268)
chr1 (300-381)||(21304781-21304862)
chr1 (404-451)||(13500862-13500909)
chr1 (300-400)||(19532893-19532991)
chr1 (260-377)||(27391403-27391526)
chr1 (249-378)||(46536395-46536530)
chr1 (300-377)||(17724688-17724766)
chr1 (300-377)||(28839395-28839473)
chr1 (300-403)||(36467169-36467270)
chr1 (300-361)||(52432384-52432446)
chr1 (300-361)||(2571435-2571495)
chr1 (300-357)||(43895923-43895980)
chr1 (300-353)||(10370158-10370213)
chr1 (279-377)||(34813973-34814077)
chr1 (323-366)||(8773309-8773352)
chr1 (300-377)||(45889221-45889300)
chr1 (300-377)||(5040549-5040627)
chr1 (300-377)||(5442396-5442474)
chr1 (249-361)||(16040149-16040267)
chr1 (323-377)||(34877088-34877142)
chr1 (300-356)||(8327794-8327851)
chr1 (324-381)||(40019059-40019116)
chr1 (300-376)||(40019816-40019893)
chr1 (279-377)||(3718798-3718901)
[»] chr5 (22 HSPs)
chr5 (300-378)||(11099451-11099530)
chr5 (300-377)||(3725242-3725320)
chr5 (300-403)||(7613740-7613841)
chr5 (300-366)||(39008199-39008266)
chr5 (274-366)||(15814709-15814807)
chr5 (300-403)||(25814397-25814498)
chr5 (300-377)||(33988256-33988334)
chr5 (300-402)||(6610871-6610971)
chr5 (283-378)||(35666940-35667039)
chr5 (323-377)||(8369694-8369748)
chr5 (300-377)||(8692792-8692870)
chr5 (300-377)||(35646063-35646141)
chr5 (300-361)||(41184732-41184794)
chr5 (248-352)||(42211410-42211520)
chr5 (300-377)||(42575612-42575690)
chr5 (404-480)||(12678268-12678345)
chr5 (300-404)||(20189924-20190027)
chr5 (299-377)||(32539718-32539797)
chr5 (300-361)||(16283561-16283623)
chr5 (300-377)||(36469068-36469146)
chr5 (274-377)||(858391-858500)
chr5 (404-464)||(31956640-31956700)
[»] scaffold0034 (1 HSPs)
scaffold0034 (300-366)||(98892-98959)
[»] scaffold0321 (1 HSPs)
scaffold0321 (304-377)||(9529-9603)
[»] scaffold0578 (1 HSPs)
scaffold0578 (413-486)||(3919-3992)


Alignment Details
Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 18 - 282
Target Start/End: Complemental strand, 4611721 - 4611451
Alignment:
Q  18 atatatgattgtggacctccaccataagttttattcttgagctcatgcaagctacacaacgaaacactatctgatatcatcaagacttatccatccaaaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  4611721 atatatgattgtggacctccaccataagttttattcttgagctcatgcaagccgcacaacgaaacactatctgatatcatcaagacttatccatccaaaa 4611622  T
Q  118 tatatatatgctgcagctgcact-----ctacatattcaaaatataattttatatcattcaactcaattattagaaaaggtataacagattcatcacatt 212  Q
    |||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4611621 tatatatatgctgcagctgcactctactctacatattcaaaatataattttatatcattcaactcaattattagaaaaggtataacagattcatcacatt 4611522  T
Q  213 taacagaaatgattctgg-ttttttgcccaaaaataatactccctcagtcctaaattcacttagtcatttg 282  Q
    |||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  4611521 taacagaaatgattctggtttttttccccaaaaataatactccctcggtcctaaattcacttagtcatttg 4611451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 404 - 637
Target Start/End: Complemental strand, 4611273 - 4611040
Alignment:
Q  404 aaaaagtgaaatggataagttattttaaaacaataattttttacaaaatgatcatttattaaaggacggaatgagtagcaaatcaattnnnnnnnttgag 503  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||||| ||| |||||        ||||    
T  4611273 aaaaagtaaaatggataagttattttaaaacaataattttttacaaaatgatcacttattaaagtacagaatgagtagtaaaacaattaaaaaaaatgag 4611174  T
Q  504 tatagactgaagttgcaaaatttaactctatgaaattttttatgcttgacatataattattcaattgcatatacttaaaccatttaagatttgccagaat 603  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  4611173 tatagattgaagttgcaaaatttaactctatgaaattttttatgcttgacatataattaatcaattgcatatacttaaaccatttaagatttgccagaat 4611074  T
Q  604 cacaacttaaatttaggaactcttgctgatgatg 637  Q
    ||||||||||||||||||||||||||||||||||    
T  4611073 cacaacttaaatttaggaactcttgctgatgatg 4611040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 264 - 408
Target Start/End: Complemental strand, 4611438 - 4611293
Alignment:
Q  264 aaattcacttagtcatttgctcatttcacatttattaaatgtataaatgaaggatagagaaaattgttttaagtgcttttgttaagtattggtgcatttt 363  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  4611438 aaattcacttagtcatttgctcatttcacatttattaaatgtataaatgaaggatagagaaaatgattttaagtgcttttgttaagtattggtgcatttt 4611339  T
Q  364 ccattagcataaatataataaatt-gaaatatattgaattgaaaaa 408  Q
    |||||||||||||||||||||||| |||||| ||||||||||||||    
T  4611338 ccattagcataaatataataaattggaaataaattgaattgaaaaa 4611293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 20 - 190
Target Start/End: Original strand, 4515344 - 4515512
Alignment:
Q  20 atatgattgtggacctccaccataagttttattcttgagctcatgcaagctacacaacgaaacactatctgatatcatcaagacttatccatccaaaata 119  Q
    ||||||||||||||| |||||||||||||| ||| | |||| ||||||||||||||  |||||| | |||||| | ||||||||| || |||||||||||    
T  4515344 atatgattgtggaccaccaccataagttttgttcctaagcttatgcaagctacaca--gaaacagtgtctgatgttatcaagactcattcatccaaaata 4515441  T
Q  120 tatatatgctgcagctgcactctacatattcaaaatataattttatatcattcaactcaattattagaaaa 190  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||    
T  4515442 tatatatgctgcagcttcactctacatattcaaaatataattttatatcattcaactcgattaatagaaaa 4515512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 300 - 377
Target Start/End: Complemental strand, 31265913 - 31265835
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaatt-gttttaagtgcttttgttaagtattggtgcattttccattagcataaat 377  Q
    |||||||||||||||||| |||||||| | |||||||||||| |||||||||||||||||||| |||| || |||||||    
T  31265913 aaatgtataaatgaaggagagagaaaaatagttttaagtgctcttgttaagtattggtgcattctccactatcataaat 31265835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 300 - 404
Target Start/End: Original strand, 14312621 - 14312723
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttccattagcataaatataataaattgaaatatattg 398  Q
    ||||| |||||||||||| | |||||| || ||||||||| |||||||||||||||||||||| ||||||| |||||||    |||| |||||| |||||    
T  14312621 aaatgcataaatgaaggacatagaaaaatggttttaagtgtttttgttaagtattggtgcattctccattatcataaat---gtaaagtgaaatgtattg 14312717  T
Q  399 aattga 404  Q
    ||||||    
T  14312718 aattga 14312723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 306 - 377
Target Start/End: Original strand, 14306220 - 14306292
Alignment:
Q  306 ataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttccattagcataaat 377  Q
    |||||||||||| | |||||| || ||||||||| |||||||||||||||||||||| ||||||| |||||||    
T  14306220 ataaatgaaggacatagaaaaatggttttaagtgtttttgttaagtattggtgcattctccattatcataaat 14306292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 299 - 406
Target Start/End: Complemental strand, 4238554 - 4238451
Alignment:
Q  299 taaatgtataaatgaaggatagagaaaattgttttaagtgcttttgttaagtattggtgcattttccattagcataaatataataaattgaaatatattg 398  Q
    |||||||||||||||| || ||| || || |||||||||||| |||||||||||||||||||| | || || |||||||    |||| |||||| |||||    
T  4238554 taaatgtataaatgaaagagaga-aatatagttttaagtgctcttgttaagtattggtgcattcttcactatcataaat---gtaaagtgaaatctattg 4238459  T
Q  399 aattgaaa 406  Q
    ||||||||    
T  4238458 aattgaaa 4238451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 300 - 407
Target Start/End: Original strand, 7301055 - 7301158
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaattgttttaagtgcttttgttaagtattggtgcattttccattagcataaatataataaattgaaatatattga 399  Q
    |||||||||||| || || ||| ||||| ||||||||||  ||||||||||||| ||||||| ||||||| |||||||    |||| || ||||||||||    
T  7301055 aaatgtataaataaatgagaga-aaaatagttttaagtgtgtttgttaagtatttgtgcattctccattatcataaat---gtaaagtggaatatattga 7301150  T
Q  400 attgaaaa 407  Q
    ||||||||    
T  7301151 attgaaaa 7301158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 300 - 369
Target Start/End: Original strand, 3604573 - 3604643
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttccatta 369  Q
    |||||||||||| || || |||||||| || |||||||| || |||||||||||||||||||| |||||||    
T  3604573 aaatgtataaataaaagagagagaaaaatggttttaagttctcttgttaagtattggtgcattctccatta 3604643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 574 - 636
Target Start/End: Original strand, 4515685 - 4515747
Alignment:
Q  574 atacttaaaccatttaagatttgccagaatcacaacttaaatttaggaactcttgctgatgat 636  Q
    ||||| ||| ||||||||||| |||||||||||||||| | |||||||||||  |||||||||    
T  4515685 atactcaaaacatttaagattagccagaatcacaacttcagtttaggaactccagctgatgat 4515747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 300 - 376
Target Start/End: Complemental strand, 15081557 - 15081480
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaatt-gttttaagtgcttttgttaagtattggtgcattttccattagcataaa 376  Q
    |||||||||||||||||  |||||||| | |||||||||||  |||||||||||| ||||||| |||| || ||||||    
T  15081557 aaatgtataaatgaaggtgagagaaaaatagttttaagtgcacttgttaagtatttgtgcattctccactatcataaa 15081480  T

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Target: scaffold0006 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 300 - 377
Target Start/End: Complemental strand, 229956 - 229879
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaattgttttaagtgcttttgttaagtattggtgcattttccattagcataaat 377  Q
    |||||||||||||||||| | |||||| ||||||||||||| |||||||||||||||||||| ||||||| |||||||    
T  229956 aaatgtataaatgaaggagatagaaaaatgttttaagtgctcttgttaagtattggtgcattctccattatcataaat 229879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 3e-19; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 300 - 377
Target Start/End: Complemental strand, 27234636 - 27234559
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaattgttttaagtgcttttgttaagtattggtgcattttccattagcataaat 377  Q
    ||||||||||||||| || |||||||||||||||||||| ||||||||||||||| |||||| |||| || |||||||    
T  27234636 aaatgtataaatgaatgacagagaaaattgttttaagtgtttttgttaagtattgatgcattctccactatcataaat 27234559  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 277 - 366
Target Start/End: Complemental strand, 11616723 - 11616629
Alignment:
Q  277 catttgctcatttcacatttattaaa----tgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttcca 366  Q
    |||||||||||||||||  |||||||    ||||||||||||||| |||||||| || ||||||||||| |||||||||||||||||||| ||||    
T  11616723 catttgctcatttcacacatattaaaaaaatgtataaatgaaggagagagaaaaatggttttaagtgctcttgttaagtattggtgcattctcca 11616629  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 300 - 377
Target Start/End: Original strand, 37490591 - 37490669
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttccattagcataaat 377  Q
    |||||||||||||||||| |||||||| || ||||||||| |||| ||||||||||||||||| |||| || |||||||    
T  37490591 aaatgtataaatgaaggagagagaaaaatgattttaagtgttttttttaagtattggtgcattctccactatcataaat 37490669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 302 - 377
Target Start/End: Complemental strand, 33584695 - 33584619
Alignment:
Q  302 atgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttccattagcataaat 377  Q
    |||||||||||||||| |||||||| || ||||||||||| |||||||||||||||| ||| |||| || |||||||    
T  33584695 atgtataaatgaaggagagagaaaaatggttttaagtgctattgttaagtattggtgtattctccagtatcataaat 33584619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 300 - 407
Target Start/End: Complemental strand, 30463150 - 30463045
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaatt-gttttaagtgcttttgttaagtattggtgcattttccattagcataaatataataaattgaaatatattg 398  Q
    ||||||||||||||| || |||||||| | |||||||||||  |||||||||||||||||||| ||||  | |||||||    |||| || |||||||||    
T  30463150 aaatgtataaatgaatgagagagaaaaatagttttaagtgcacttgttaagtattggtgcattctccacaatcataaat---gtaaaatggaatatattg 30463054  T
Q  399 aattgaaaa 407  Q
    |||||||||    
T  30463053 aattgaaaa 30463045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 300 - 377
Target Start/End: Complemental strand, 47454138 - 47454060
Alignment:
Q  300 aaatgtataaatgaaggatagag-aaaattgttttaagtgcttttgttaagtattggtgcattttccattagcataaat 377  Q
    |||| ||||||||||||| |||| ||||| |||||||||||  |||||||||||||||||||| |||| || |||||||    
T  47454138 aaatatataaatgaaggagagagtaaaatagttttaagtgcacttgttaagtattggtgcattctccactatcataaat 47454060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 300 - 402
Target Start/End: Original strand, 5724681 - 5724780
Alignment:
Q  300 aaatgtataaatgaaggatagag-aaaattgttttaagtgcttttgttaagtattggtgcattttccattagcataaatataataaattgaaatatattg 398  Q
    |||||||||||||||||| |||| ||||| |||||||||||  |||||||||||| ||||||| |||| || |||||||    |||| ||||||||||||    
T  5724681 aaatgtataaatgaaggagagagaaaaatagttttaagtgc-cttgttaagtattagtgcattctccactatcataaat---gtaaagtgaaatatattg 5724776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 249 - 356
Target Start/End: Original strand, 45890775 - 45890888
Alignment:
Q  249 tactccctcagtcctaaattcacttagtcatttgctcatttcacatttattaa-----atgtataaatgaaggatagagaaaattg-ttttaagtgcttt 342  Q
    ||||||||| ||||| |||| ||| ||| ||||| ||||||||||  ||||||     ||||||||| |||||| |||||||| || |||||| ||||||    
T  45890775 tactccctccgtcctgaattaactgagttatttgttcatttcacacgtattaagaaaaatgtataaaagaaggagagagaaaaatggttttaaatgcttt 45890874  T
Q  343 tgttaagtattggt 356  Q
    ||||||||||||||    
T  45890875 tgttaagtattggt 45890888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 307 - 407
Target Start/End: Original strand, 31581423 - 31581521
Alignment:
Q  307 taaatgaaggatagagaaaatt-gttttaagtgcttttgttaagtattggtgcattttccattagcataaatataataaattgaaatatattgaattgaa 405  Q
    ||||||||||| ||| |||| | ||||||||| | ||||||||||||||||||||| |||| || |||||||    |||| || ||||||||||||||||    
T  31581423 taaatgaaggagagataaaaatagttttaagtacatttgttaagtattggtgcattctccaatatcataaat---gtaaaatggaatatattgaattgaa 31581519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 300 - 377
Target Start/End: Original strand, 2846649 - 2846727
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaatt-gttttaagtgcttttgttaagtattggtgcattttccattagcataaat 377  Q
    ||||||||||||||| || |||||||| | |||||||||||| |||||||||||||||  ||| |||| || |||||||    
T  2846649 aaatgtataaatgaacgagagagaaaaatagttttaagtgctcttgttaagtattggtctattctccactatcataaat 2846727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 300 - 369
Target Start/End: Original strand, 5083445 - 5083515
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaatt-gttttaagtgcttttgttaagtattggtgcattttccatta 369  Q
    |||||||||||| ||||| ||| |||| | |||||||||||| |||||||||||||||||||  |||||||    
T  5083445 aaatgtataaataaaggaaagataaaaatagttttaagtgctcttgttaagtattggtgcatactccatta 5083515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 305 - 377
Target Start/End: Original strand, 38181852 - 38181925
Alignment:
Q  305 tataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttccattagcataaat 377  Q
    |||||||||| || |||||||| || ||||||||| | ||| ||||||||||||||||||||| || |||||||    
T  38181852 tataaatgaaagagagagaaaaatggttttaagtgttcttggtaagtattggtgcattttccactatcataaat 38181925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 300 - 356
Target Start/End: Original strand, 44604451 - 44604508
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggt 356  Q
    |||||||||||||||||| |||||||| || ||||||||| | |||||||||||||||    
T  44604451 aaatgtataaatgaaggagagagaaaaatgattttaagtgttcttgttaagtattggt 44604508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 300 - 377
Target Start/End: Original strand, 7425850 - 7425929
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgtt-aagtattggtgcattttccattagcataaat 377  Q
    ||||||||||||||| || |||||||| || ||||||||| | ||||| ||||||||||||||| |||| || |||||||    
T  7425850 aaatgtataaatgaatgagagagaaaaatggttttaagtgttcttgtttaagtattggtgcattctccactatcataaat 7425929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 307 - 407
Target Start/End: Complemental strand, 23704043 - 23703945
Alignment:
Q  307 taaatgaaggatagagaaaatt-gttttaagtgcttttgttaagtattggtgcattttccattagcataaatataataaattgaaatatattgaattgaa 405  Q
    ||||||||||| |||||||| | |||||||| ||  ||||||| ||||| |||||| |||| || ||||||| ||| |   |||||||||||||||||||    
T  23704043 taaatgaaggagagagaaaaatagttttaagcgcacttgttaattattgctgcattctccactatcataaatgtaaaa---tgaaatatattgaattgaa 23703947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 323 - 366
Target Start/End: Original strand, 29434577 - 29434620
Alignment:
Q  323 aaaattgttttaagtgcttttgttaagtattggtgcattttcca 366  Q
    ||||| ||||||||||||||||||||||||||||| ||| ||||    
T  29434577 aaaatagttttaagtgcttttgttaagtattggtggattctcca 29434620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 361
Target Start/End: Complemental strand, 32776114 - 32776055
Alignment:
Q  303 tgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcatt 361  Q
    ||||||| ||||||| |||||||| || |||| ||||| |||||||||||||||||||||    
T  32776114 tgtataagtgaaggagagagaaaaatggttttgagtgcctttgttaagtattggtgcatt 32776055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 300 - 366
Target Start/End: Complemental strand, 36117796 - 36117729
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaatt-gttttaagtgcttttgttaagtattggtgcattttcca 366  Q
    |||||||||||| ||||| |||||||| | |||||||||||  |||||||||||| ||||||| ||||    
T  36117796 aaatgtataaataaaggaaagagaaaaatagttttaagtgcacttgttaagtatttgtgcattctcca 36117729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 300 - 377
Target Start/End: Original strand, 2842025 - 2842103
Alignment:
Q  300 aaatgtataaatgaaggatagag-aaaattgttttaagtgcttttgttaagtattggtgcattttccattagcataaat 377  Q
    |||||||||||||||||| |||| ||||| || ||||||| | |||| |||||||| |||||| |||| || |||||||    
T  2842025 aaatgtataaatgaaggagagagaaaaatggtgttaagtgttattgtcaagtattgatgcattctccactatcataaat 2842103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 300 - 377
Target Start/End: Complemental strand, 29257681 - 29257603
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttccattagcataaat 377  Q
    |||||||||||||||| | ||| |||| || ||||||||||| ||||||| |||||||  |||||||| || |||||||    
T  29257681 aaatgtataaatgaagcagagaaaaaaatggttttaagtgctcttgttaattattggtctattttccactatcataaat 29257603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 300 - 376
Target Start/End: Complemental strand, 8150092 - 8150016
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttccattagcataaa 376  Q
    |||||||||| |||| || |||||||| || ||||||||| |||||| || |||| ||||||||||||||| ||||||    
T  8150092 aaatgtataagtgaaagagagagaaaaatggttttaagtg-ttttgtcaaatatttgtgcattttccattatcataaa 8150016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 300 - 377
Target Start/End: Original strand, 49100476 - 49100553
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaattgttttaagtgcttttgttaagtattggtgcattttccattagcataaat 377  Q
    ||||||||||||||| || |||||||| |  |||||||||  |||||||||||||||  ||| |||| || |||||||    
T  49100476 aaatgtataaatgaaagacagagaaaaatagtttaagtgcacttgttaagtattggtttattctccactatcataaat 49100553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 311 - 362
Target Start/End: Original strand, 29645218 - 29645270
Alignment:
Q  311 tgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattt 362  Q
    ||||||| ||||||||||  ||||||||| | |||||||||||||||||||||    
T  29645218 tgaaggagagagaaaattaattttaagtgttcttgttaagtattggtgcattt 29645270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 2e-17; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 277 - 377
Target Start/End: Complemental strand, 5392211 - 5392105
Alignment:
Q  277 catttgctcatttcacatttatt-----aaatgtataaatgaaggatagag-aaaattgttttaagtgcttttgttaagtattggtgcattttccattag 370  Q
    |||||||||||||||||  ||||     |||||||||||||||||| |||| ||||| ||||||||||||||||| ||||||||||||||| |||| ||     
T  5392211 catttgctcatttcacacctattaagacaaatgtataaatgaaggagagagaaaaatggttttaagtgcttttgtcaagtattggtgcattctccactat 5392112  T
Q  371 cataaat 377  Q
    |||||||    
T  5392111 cataaat 5392105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 300 - 403
Target Start/End: Complemental strand, 2349485 - 2349383
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaa--ttgttttaagtgcttttgttaagtattggtgcattttccattagcataaatataataaattgaaatatatt 397  Q
    |||||||||||||||||| ||||||||  | ||||||||||| ||||||||||||| ||||||| |||| || |||||||    ||||||| ||||||||    
T  2349485 aaatgtataaatgaaggagagagaaaaaatagttttaagtgcatttgttaagtatttgtgcattctccactatcataaat---gtaaattggaatatatt 2349389  T
Q  398 gaattg 403  Q
    ||||||    
T  2349388 gaattg 2349383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 302 - 377
Target Start/End: Complemental strand, 45425617 - 45425541
Alignment:
Q  302 atgtataaatgaaggatagaga-aaattgttttaagtgcttttgttaagtattggtgcattttccattagcataaat 377  Q
    |||||||||||||||| ||||| |||| |||||||||||| ||||||||||||| ||||||||||| || |||||||    
T  45425617 atgtataaatgaaggagagagacaaatggttttaagtgctcttgttaagtattgatgcattttccactatcataaat 45425541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 300 - 377
Target Start/End: Original strand, 44790395 - 44790473
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaatt-gttttaagtgcttttgttaagtattggtgcattttccattagcataaat 377  Q
    |||||||||||||||||| |||||||| | |||||||||||  |||||||||||||||||||| |||| || |||||||    
T  44790395 aaatgtataaatgaaggagagagaaaaatagttttaagtgcacttgttaagtattggtgcattctccactatcataaat 44790473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 274 - 376
Target Start/End: Original strand, 4480412 - 4480519
Alignment:
Q  274 agtcatttgctcatttcacatttattaa-----atgtataaatgaaggatagagaaaattgttttaagtgcttttgttaagtattggtgcattttccatt 368  Q
    |||||||||||||||| |||| ||||||     ||||||||||||| || |||||||| | |||||| | ||||||||| ||||||||||||| |||| |    
T  4480412 agtcatttgctcatttaacatatattaagaaaaatgtataaatgaaagagagagaaaaatattttaaatacttttgttatgtattggtgcattctccagt 4480511  T
Q  369 agcataaa 376  Q
    | ||||||    
T  4480512 atcataaa 4480519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 300 - 366
Target Start/End: Original strand, 5962446 - 5962513
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaatt-gttttaagtgcttttgttaagtattggtgcattttcca 366  Q
    |||||||||||||||||| | ||||||   ||||||||||||||||||||||||||||||||| ||||    
T  5962446 aaatgtataaatgaaggagatagaaaaaacgttttaagtgcttttgttaagtattggtgcattctcca 5962513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 300 - 377
Target Start/End: Complemental strand, 9014837 - 9014759
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttccattagcataaat 377  Q
    |||| ||||||||||| | |||||||| || ||||||||||||||||||||||||| |||||| |||| || |||||||    
T  9014837 aaatatataaatgaagaagagagaaaaatgattttaagtgcttttgttaagtattgatgcattctccactatcataaat 9014759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 300 - 377
Target Start/End: Original strand, 29730869 - 29730947
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttccattagcataaat 377  Q
    |||| ||||||||||||| |||||||| || ||||||||| | |||||||||||||||||||| |||| || |||||||    
T  29730869 aaatatataaatgaaggagagagaaaagtggttttaagtgttcttgttaagtattggtgcattctccactatcataaat 29730947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 300 - 366
Target Start/End: Complemental strand, 12653821 - 12653754
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaatt-gttttaagtgcttttgttaagtattggtgcattttcca 366  Q
    |||||||||||||||| | |||||||| | ||||||||||| |||||||| |||||||||||| ||||    
T  12653821 aaatgtataaatgaagtagagagaaaaatagttttaagtgcgtttgttaaatattggtgcattatcca 12653754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 299 - 377
Target Start/End: Complemental strand, 31132865 - 31132786
Alignment:
Q  299 taaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttccattagcataaat 377  Q
    |||||||||| | ||||||||||||||| || ||||||||||| |||||||||||||||  ||| |||| || |||||||    
T  31132865 taaatgtatagacgaaggatagagaaaaatgattttaagtgctcttgttaagtattggtatattctccagtatcataaat 31132786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 300 - 407
Target Start/End: Original strand, 22324928 - 22325033
Alignment:
Q  300 aaatgtataaatgaaggatagag-aaaattgttttaagtgcttttgttaagtattggtgcattttccattagcataaatataataaattgaaatatattg 398  Q
    |||||||||||||||||| |||| |||||  |||||||||   ||||||| |||| |||||||||||| || |||||||    |||| || |||||||||    
T  22324928 aaatgtataaatgaaggagagagaaaaataattttaagtgtacttgttaaatattagtgcattttccactatcataaat---gtaaagtggaatatattg 22325024  T
Q  399 aattgaaaa 407  Q
    |||||||||    
T  22325025 aattgaaaa 22325033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 300 - 361
Target Start/End: Complemental strand, 39171677 - 39171615
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcatt 361  Q
    |||| ||||||||||||| |||||||| || |||||||| |||||||||||||||| ||||||    
T  39171677 aaatatataaatgaaggagagagaaaaatggttttaagtacttttgttaagtattgatgcatt 39171615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 300 - 366
Target Start/End: Original strand, 38252410 - 38252478
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaa--ttgttttaagtgcttttgttaagtattggtgcattttcca 366  Q
    |||||||||||||||||| ||||||||  | |||||||||||  |||||||||||| ||||||| ||||    
T  38252410 aaatgtataaatgaaggagagagaaaaaatagttttaagtgcacttgttaagtattagtgcattctcca 38252478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 304 - 366
Target Start/End: Complemental strand, 21587403 - 21587344
Alignment:
Q  304 gtataaatgaaggatagagaaaattgttttaagtgcttttgttaagtattggtgcattttcca 366  Q
    |||||||||||||| ||||||    |||||||||||| |||||||||||||||||||| ||||    
T  21587403 gtataaatgaaggagagagaag---gttttaagtgctcttgttaagtattggtgcattctcca 21587344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 300 - 354
Target Start/End: Complemental strand, 28802901 - 28802846
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattg 354  Q
    ||||||||||||||| || |||||||| || ||||||||||| |||||||||||||    
T  28802901 aaatgtataaatgaaagagagagaaaaatggttttaagtgctcttgttaagtattg 28802846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 300 - 404
Target Start/End: Original strand, 32967250 - 32967352
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaatt-gttttaagtgcttttgttaagtattggtgcattttccattagcataaatataataaattgaaatatattg 398  Q
    |||||||||||||||| | |||||||| | |||||||||||  || |||||||||||| |||| |||| || |||||||    |||| || |||||||||    
T  32967250 aaatgtataaatgaagaagagagaaaaatagttttaagtgcacttcttaagtattggtccattctccactatcataaat---ttaaagtggaatatattg 32967346  T
Q  399 aattga 404  Q
    ||||||    
T  32967347 aattga 32967352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 300 - 365
Target Start/End: Complemental strand, 139156 - 139090
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttcc 365  Q
    ||||||||||||||| || ||| |||| || |||||| | || ||||||||||||||||||||||||    
T  139156 aaatgtataaatgaatgagagataaaaatgattttaaattctcttgttaagtattggtgcattttcc 139090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 300 - 377
Target Start/End: Original strand, 7258340 - 7258418
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttccattagcataaat 377  Q
    |||| ||| ||||||||| |||||||| || ||||||| ||| |||| ||||||||||||||||  ||||| |||||||    
T  7258340 aaatatattaatgaaggaaagagaaaaatggttttaagcgctcttgtcaagtattggtgcatttatcattatcataaat 7258418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 300 - 361
Target Start/End: Original strand, 32241397 - 32241459
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcatt 361  Q
    |||||||||||||||||| ||| |||| || ||||||||| | ||||||||||||| ||||||    
T  32241397 aaatgtataaatgaaggagagataaaaatgattttaagtgttcttgttaagtattgatgcatt 32241459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 300 - 377
Target Start/End: Original strand, 33190882 - 33190960
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttccattagcataaat 377  Q
    |||||||||||||||| | |||||||| || ||||||||| | ||||||||||||  |||||| |||| || |||||||    
T  33190882 aaatgtataaatgaagaagagagaaaaatgattttaagtgttcttgttaagtattaatgcattctccactatcataaat 33190960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 300 - 406
Target Start/End: Original strand, 37219734 - 37219841
Alignment:
Q  300 aaatgtataaatgaaggatagagaaa-attgttttaag---tgcttttgttaagtattggtgcattttccattagcataaatataataaattgaaatata 395  Q
    |||||||||||||||||| ||||||| ||  |||||||   || | ||||||||||| |||||||| ||| ||| |||||||   ||||| |||||||||    
T  37219734 aaatgtataaatgaaggagagagaaatatgattttaagtgttgttgttgttaagtatgggtgcattctcccttatcataaat---ataaagtgaaatata 37219830  T
Q  396 ttgaattgaaa 406  Q
    || ||||||||    
T  37219831 ttaaattgaaa 37219841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 300 - 377
Target Start/End: Original strand, 42412356 - 42412434
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaatt-gttttaagtgcttttgttaagtattggtgcattttccattagcataaat 377  Q
    |||||||||| |||| || |||||||| | |||||||||||| |||| |  |||||||||||| ||||||| |||||||    
T  42412356 aaatgtataagtgaatgagagagaaaaatagttttaagtgctcttgtcatatattggtgcattctccattatcataaat 42412434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 300 - 404
Target Start/End: Complemental strand, 45197744 - 45197643
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaattgttttaagtgcttttgttaagtattggtgcattttccattagcataaatataataaattgaaatatattga 399  Q
    |||| |||||||||| || ||| |||||  ||||||||| ||||||||||||||| |||||| | || |  |||||||    |||| |||||||||||||    
T  45197744 aaatatataaatgaatgagagaaaaaatgattttaagtgtttttgttaagtattgatgcattcttcactgtcataaat---gtaaaatgaaatatattga 45197648  T
Q  400 attga 404  Q
    |||||    
T  45197647 attga 45197643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 403
Target Start/End: Complemental strand, 34133256 - 34133160
Alignment:
Q  305 tataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttccattagcataaatataataaattgaaatatattgaattg 403  Q
    ||||||| ||||| |||||||| |  ||||||||||  |||||||||||||| ||||| |||| || |||||||    |||| |||||||||||||||||    
T  34133256 tataaataaaggagagagaaaaataattttaagtgcacttgttaagtattggcgcattctccactatcataaat---gtaaaatgaaatatattgaattg 34133160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 329 - 361
Target Start/End: Complemental strand, 8618232 - 8618200
Alignment:
Q  329 gttttaagtgcttttgttaagtattggtgcatt 361  Q
    |||||||||| ||||||||||||||||||||||    
T  8618232 gttttaagtgtttttgttaagtattggtgcatt 8618200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 279 - 377
Target Start/End: Original strand, 27973633 - 27973737
Alignment:
Q  279 tttgctcatttcacatttatt-----aaatgtataaatgaaggatagag-aaaattgttttaagtgcttttgttaagtattggtgcattttccattagca 372  Q
    ||||||||||||||| |||||     |||||||| | |||||||| ||| ||||| |||||||||| | |||| |||||||| | ||||| |||||| ||    
T  27973633 tttgctcatttcacacttattaagaaaaatgtattagtgaaggatggagaaaaatggttttaagtgttcttgtcaagtattgatccatttaccattatca 27973732  T
Q  373 taaat 377  Q
    |||||    
T  27973733 taaat 27973737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 279 - 377
Target Start/End: Original strand, 28030902 - 28031006
Alignment:
Q  279 tttgctcatttcacatttatt-----aaatgtataaatgaaggatagag-aaaattgttttaagtgcttttgttaagtattggtgcattttccattagca 372  Q
    ||||||||||||||| |||||     |||||||| | |||||||| ||| ||||| |||||||||| | |||| |||||||| | ||||| |||||| ||    
T  28030902 tttgctcatttcacacttattaagaaaaatgtattagtgaaggatggagaaaaatggttttaagtgttcttgtcaagtattgatccatttaccattatca 28031001  T
Q  373 taaat 377  Q
    |||||    
T  28031002 taaat 28031006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 306 - 361
Target Start/End: Original strand, 31410587 - 31410643
Alignment:
Q  306 ataaatgaaggatagagaaaatt-gttttaagtgcttttgttaagtattggtgcatt 361  Q
    |||||||||||| ||||||||   |||||||||| ||||||||| ||||||||||||    
T  31410587 ataaatgaaggagagagaaaaacagttttaagtgtttttgttaaatattggtgcatt 31410643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 304 - 377
Target Start/End: Original strand, 4360385 - 4360459
Alignment:
Q  304 gtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttccattagcataaat 377  Q
    ||||||||||| || |||||||| || |||||||||||||||||||||||||||||||| |||| ||||||||||    
T  4360385 gtataaatgaatgaaagagaaaaatggttttaagtgcttttgttaagtattggtgcattctccactagcataaat 4360459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 300 - 377
Target Start/End: Original strand, 18849732 - 18849810
Alignment:
Q  300 aaatgtataaatgaaggatagagaaa-attgttttaagtgcttttgttaagtattggtgcattttccattagcataaat 377  Q
    |||||||||||||||||| | ||||| || |||||||||||| |||||||||||||||||||| |||| || |||||||    
T  18849732 aaatgtataaatgaaggagaaagaaatatggttttaagtgctcttgttaagtattggtgcattctccactatcataaat 18849810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 304 - 366
Target Start/End: Original strand, 283454 - 283517
Alignment:
Q  304 gtataaatgaaggatagagaaaa-ttgttttaagtgcttttgttaagtattggtgcattttcca 366  Q
    |||||||||||||| |||||||| |||||||||||||| |||||||||||| ||||||| ||||    
T  283454 gtataaatgaaggagagagaaaaattgttttaagtgctcttgttaagtatttgtgcattctcca 283517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 300 - 404
Target Start/End: Original strand, 38160125 - 38160227
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaa-ttgttttaagtgcttttgttaagtattggtgcattttccattagcataaatataataaattgaaatatattg 398  Q
    |||||||||||| ||||| |||||||| ||||||||||||  ||||| || ||||| |||||| ||||||| |||||||   | ||| ||||||||||||    
T  38160125 aaatgtataaataaaggagagagaaaaattgttttaagtgtctttgtcaaatattgatgcattctccattatcataaat---acaaagtgaaatatattg 38160221  T
Q  399 aattga 404  Q
    ||||||    
T  38160222 aattga 38160227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 300 - 377
Target Start/End: Complemental strand, 8295163 - 8295085
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaa-ttgttttaagtgcttttgttaagtattggtgcattttccattagcataaat 377  Q
    ||||||||||||||| || |||||||| ||||||||||| || ||| |||||||||||||||| |||| || |||||||    
T  8295163 aaatgtataaatgaaagagagagaaaaattgttttaagtcctcttgataagtattggtgcattctccactatcataaat 8295085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 249 - 377
Target Start/End: Original strand, 22872303 - 22872439
Alignment:
Q  249 tactccctcagtcctaaattcacttagtcatttgctcatttcacatttatt-----aaatgtataaatgaaggatagag-aaaattgttttaagtgct-- 340  Q
    ||||||||| |||| ||||| | | || |||||||||||||||||  ||||     |||||||||| ||||| | |||| ||||| ||||||||||||      
T  22872303 tactccctccgtcccaaattaagtgagccatttgctcatttcacacatattaagaaaaatgtataagtgaagaagagagaaaaatggttttaagtgctcg 22872402  T
Q  341 tttgttaagtattggtgcattttccattagcataaat 377  Q
    ||||| ||||||||||||||| ||||||| |||||||    
T  22872403 tttgtcaagtattggtgcattctccattatcataaat 22872439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 300 - 378
Target Start/End: Original strand, 42185769 - 42185848
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttccattagcataaata 378  Q
    |||||||||||||||||| | |||||| || ||||||||||| |||||||||||||||  ||| |||| || ||||||||    
T  42185769 aaatgtataaatgaaggagatagaaaaatgattttaagtgctcttgttaagtattggtctattatccactatcataaata 42185848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 300 - 377
Target Start/End: Complemental strand, 28974440 - 28974362
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttccattagcataaat 377  Q
    ||||||||||||||| |  ||| |||| || ||||||||| | |||||||||||||||||||| ||||||| |||||||    
T  28974440 aaatgtataaatgaaagggagataaaagtggttttaagtgttgttgttaagtattggtgcattctccattatcataaat 28974362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 377
Target Start/End: Complemental strand, 41436591 - 41436537
Alignment:
Q  323 aaaattgttttaagtgcttttgttaagtattggtgcattttccattagcataaat 377  Q
    ||||| ||||||||||||||||||| ||||||||||||| |||| || |||||||    
T  41436591 aaaatggttttaagtgcttttgttatgtattggtgcattctccactatcataaat 41436537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 405 - 451
Target Start/End: Complemental strand, 49448809 - 49448763
Alignment:
Q  405 aaaagtgaaatggataagttattttaaaacaataattttttacaaaa 451  Q
    ||||||||||||||| ||||||||||| | |||||||||||||||||    
T  49448809 aaaagtgaaatggatcagttattttaagaaaataattttttacaaaa 49448763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 300 - 377
Target Start/End: Complemental strand, 49448975 - 49448897
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttccattagcataaat 377  Q
    |||||||||| ||||||| |||||||| || ||||||||||| |||| ||||||| ||||||| || |||| |||||||    
T  49448975 aaatgtataagtgaaggagagagaaaaatggttttaagtgctcttgtcaagtatttgtgcattctctattatcataaat 49448897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 300 - 377
Target Start/End: Complemental strand, 49812363 - 49812285
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaatt-gttttaagtgcttttgttaagtattggtgcattttccattagcataaat 377  Q
    |||| ||||||||||||| ||| |||| | |||||||||||  |||||||||||||||||||| |||| || |||||||    
T  49812363 aaatttataaatgaaggagagaaaaaaatagttttaagtgcacttgttaagtattggtgcattatccactatcataaat 49812285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 300 - 377
Target Start/End: Original strand, 54729457 - 54729535
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaatt-gttttaagtgcttttgttaagtattggtgcattttccattagcataaat 377  Q
    ||||||||||||||| || |||||||| | |||||||||| |||||||||||||| ||| ||| |||| || |||||||    
T  54729457 aaatgtataaatgaaagagagagaaaaatagttttaagtgtttttgttaagtattagtgtattctccactatcataaat 54729535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 300 - 377
Target Start/End: Complemental strand, 4727654 - 4727577
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaattgttttaagtgcttttgttaagtattggtgcattttccattagcataaat 377  Q
    |||| ||||| ||||||| |||||||| || ||||| || | ||||||| ||||| |||||||||||||| |||||||    
T  4727654 aaatatataattgaaggagagagaaaaatgatttaaatgttcttgttaaatattgatgcattttccattatcataaat 4727577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 274 - 353
Target Start/End: Complemental strand, 17237208 - 17237123
Alignment:
Q  274 agtcatttgctcatttcacatttattaa-----atgtataaatgaaggatagagaaaatt-gttttaagtgcttttgttaagtatt 353  Q
    ||||||||||||||||||||  ||||||     || ||||||||||||| |||||||| | |||||||||| ||||||||||||||    
T  17237208 agtcatttgctcatttcacacctattaagaaaaatatataaatgaaggagagagaaaaatagttttaagtgattttgttaagtatt 17237123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 300 - 406
Target Start/End: Complemental strand, 41203871 - 41203767
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttccattagcataaatataataaattgaaatatattg 398  Q
    |||||||||||||||||| | |||||| || |||| |||||| ||||||||||||| |||||| | || || |||||||   | ||| || |||||||||    
T  41203871 aaatgtataaatgaaggagatagaaaaatggtttttagtgctcttgttaagtattgatgcattcttcactaccataaat---acaaagtggaatatattg 41203775  T
Q  399 aattgaaa 406  Q
    ||||||||    
T  41203774 aattgaaa 41203767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 300 - 356
Target Start/End: Complemental strand, 49306721 - 49306664
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggt 356  Q
    ||||||||||||||| || |||||||| || ||||||||||| |||||||||||||||    
T  49306721 aaatgtataaatgaaagagagagaaaaatggttttaagtgctcttgttaagtattggt 49306664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 304 - 366
Target Start/End: Original strand, 39976371 - 39976430
Alignment:
Q  304 gtataaatgaaggatagagaaaattgttttaagtgcttttgttaagtattggtgcattttcca 366  Q
    |||||||||||||| ||||||    |||||||||||| |||||||||||||||||||| ||||    
T  39976371 gtataaatgaaggagagagaag---gttttaagtgctcttgttaagtattggtgcattctcca 39976430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 405 - 473
Target Start/End: Original strand, 44022018 - 44022085
Alignment:
Q  405 aaaagtgaaatggataagttattttaaaacaataattttttacaaaatgatcatttattaaaggacgga 473  Q
    |||| |||||||||| | ||||||||| |||||| |||||||||||||||||| |||| || |||||||    
T  44022018 aaaattgaaatggatcaattattttaagacaata-ttttttacaaaatgatcaattatgaagggacgga 44022085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 300 - 378
Target Start/End: Complemental strand, 4357701 - 4357622
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttccattagcataaata 378  Q
    |||| ||||||||||||| |||||||  || ||||||||| |||||||||||||||||| ||| | || || ||||||||    
T  4357701 aaatatataaatgaaggagagagaaagatgattttaagtgtttttgttaagtattggtggattcttcactatcataaata 4357622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 323 - 378
Target Start/End: Complemental strand, 33047602 - 33047547
Alignment:
Q  323 aaaattgttttaagtgcttttgttaagtattggtgcattttccattagcataaata 378  Q
    ||||| ||||||||||||||||||||||||||||  ||| |||| || ||||||||    
T  33047602 aaaatggttttaagtgcttttgttaagtattggtagattctccactatcataaata 33047547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 300 - 366
Target Start/End: Original strand, 35909546 - 35909613
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttcca 366  Q
    ||||||||||||||| || ||| |||| |  |||||||||  ||||||||||||||||||||||||||    
T  35909546 aaatgtataaatgaatgaaagataaaaataattttaagtgtatttgttaagtattggtgcattttcca 35909613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 300 - 362
Target Start/End: Complemental strand, 38977126 - 38977063
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaatt-gttttaagtgcttttgttaagtattggtgcattt 362  Q
    |||||||||||||||| | |||||||| | |||||||||||  || ||||||||||||||||||    
T  38977126 aaatgtataaatgaagaagagagaaaaatagttttaagtgcacttcttaagtattggtgcattt 38977063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 300 - 377
Target Start/End: Complemental strand, 26185316 - 26185238
Alignment:
Q  300 aaatgtataaatgaaggatagag-aaaattgttttaagtgcttttgttaagtattggtgcattttccattagcataaat 377  Q
    |||||||||||||||||| |||| ||||| ||||||| | || |||||||||||||||  ||| |||| || |||||||    
T  26185316 aaatgtataaatgaaggagagagaaaaatggttttaaatactcttgttaagtattggtctattctccactatcataaat 26185238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 300 - 361
Target Start/End: Complemental strand, 30568797 - 30568735
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcatt 361  Q
    ||||||||||| |||||| |||||||| || ||||||||| | |||||||||||| |||||||    
T  30568797 aaatgtataaaggaaggaaagagaaaaatggttttaagtgttattgttaagtattagtgcatt 30568735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 300 - 377
Target Start/End: Complemental strand, 39979914 - 39979836
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaatt-gttttaagtgcttttgttaagtattggtgcattttccattagcataaat 377  Q
    |||||||||||||||| | | |||||| | |||||||||||  ||||||||||| |||||||| |||| || |||||||    
T  39979914 aaatgtataaatgaagtagaaagaaaaatagttttaagtgcacttgttaagtatcggtgcattctccactatcataaat 39979836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 300 - 377
Target Start/End: Original strand, 41710117 - 41710195
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttccattagcataaat 377  Q
    |||||||||||||||| | ||| |||| || ||||||||||| ||||||| |||||||  |||||||| || |||||||    
T  41710117 aaatgtataaatgaagcagagaaaaaaatggttttaagtgctcttgttaattattggtctattttccactatcataaat 41710195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 366
Target Start/End: Complemental strand, 3686115 - 3686078
Alignment:
Q  329 gttttaagtgcttttgttaagtattggtgcattttcca 366  Q
    ||||||||| ||||||||||||||||||||||| ||||    
T  3686115 gttttaagtacttttgttaagtattggtgcattctcca 3686078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 381
Target Start/End: Complemental strand, 28279946 - 28279889
Alignment:
Q  324 aaattgttttaagtgcttttgttaagtattggtgcattttccattagcataaatataa 381  Q
    |||| ||||| ||||  ||||||||||||||||||||||| | ||| |||||||||||    
T  28279946 aaatagttttgagtgtctttgttaagtattggtgcatttttctttatcataaatataa 28279889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 300 - 356
Target Start/End: Original strand, 42024174 - 42024231
Alignment:
Q  300 aaatgtataaatgaaggatagag-aaaattgttttaagtgcttttgttaagtattggt 356  Q
    |||||||||||||||||| |||| ||||| ||||||| | || |||||||||||||||    
T  42024174 aaatgtataaatgaaggagagagaaaaatggttttaactactcttgttaagtattggt 42024231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 330 - 366
Target Start/End: Complemental strand, 27977250 - 27977214
Alignment:
Q  330 ttttaagtgcttttgttaagtattggtgcattttcca 366  Q
    ||||||||| |||||||||||||||||||||| ||||    
T  27977250 ttttaagtgtttttgttaagtattggtgcattctcca 27977214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 279 - 377
Target Start/End: Original strand, 52676978 - 52677082
Alignment:
Q  279 tttgctcatttcacatttattaa-----atgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttccattagca 372  Q
    ||||||||||||| |||||||||     |||||| | |||| || |||||||| || ||||||||||| ||| ||||||||| |||||||  ||||| ||    
T  52676978 tttgctcatttcatatttattaagaaaaatgtattagtgaatgaaagagaaaaatgattttaagtgctcttgataagtattgatgcatttatcattatca 52677077  T
Q  373 taaat 377  Q
    |||||    
T  52677078 taaat 52677082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 7e-17; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 247 - 404
Target Start/End: Original strand, 53876351 - 53876511
Alignment:
Q  247 aatactccctcagtcctaaattcacttagtcatttgctcatttcacatttattaa-----atgtataaatgaaggatagagaaaattg-ttttaagtgct 340  Q
    ||||||||||| ||||| |||| ||| ||||||||| | |||||| |  ||||||     ||||||||||||||||  || |||| || |||||||||||    
T  53876351 aatactccctccgtcctcaattaactgagtcatttgtttatttcatagatattaagaaaaatgtataaatgaaggagtgaaaaaaatgattttaagtgct 53876450  T
Q  341 tttgttaagtattggtgcattttccattagcataaatataataaattgaaatatattgaattga 404  Q
    |||||||| |||| |||||||||||| || |||||||    |||| ||||||||||||||||||    
T  53876451 tttgttaaatatttgtgcattttccactatcataaat---gtaaagtgaaatatattgaattga 53876511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 300 - 366
Target Start/End: Complemental strand, 9017935 - 9017868
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaatt-gttttaagtgcttttgttaagtattggtgcattttcca 366  Q
    ||||||||||||||| || |||||||| | ||||||||||||||||||||||||||||||||| ||||    
T  9017935 aaatgtataaatgaaagagagagaaaaatagttttaagtgcttttgttaagtattggtgcattctcca 9017868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 300 - 377
Target Start/End: Original strand, 39866526 - 39866604
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaatt-gttttaagtgcttttgttaagtattggtgcattttccattagcataaat 377  Q
    |||||||||||||||||| |||||||| | |||||||||| |||||||||||||||||| ||| |||| || |||||||    
T  39866526 aaatgtataaatgaaggaaagagaaaaatagttttaagtgattttgttaagtattggtgtattctccactatcataaat 39866604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 300 - 377
Target Start/End: Original strand, 43639489 - 43639567
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttccattagcataaat 377  Q
    |||| ||||||||||||| |||||||| || ||||||||||| ||||||||||||| ||||||||||| || |||||||    
T  43639489 aaatatataaatgaaggagagagaaaaatggttttaagtgctgttgttaagtattgatgcattttccactatcataaat 43639567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 300 - 377
Target Start/End: Original strand, 54122197 - 54122275
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaatt-gttttaagtgcttttgttaagtattggtgcattttccattagcataaat 377  Q
    |||||||||||||||||| |||||||| | ||||||| || |||||||||||||||||||||| |||| || |||||||    
T  54122197 aaatgtataaatgaaggagagagaaaaatagttttaaatgtttttgttaagtattggtgcattctccactatcataaat 54122275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 300 - 378
Target Start/End: Complemental strand, 5245546 - 5245467
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaatt-gttttaagtgcttttgttaagtattggtgcattttccattagcataaata 378  Q
    ||||||||| |||||||| |||||||| | |||||||||||| |||||||||||||||| ||| |||| || ||||||||    
T  5245546 aaatgtatacatgaaggagagagaaaaatagttttaagtgctcttgttaagtattggtgtattctccaatatcataaata 5245467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 274 - 366
Target Start/End: Complemental strand, 2868739 - 2868641
Alignment:
Q  274 agtcatttgctcatttcacatttatt-----aaatgtataaatgaaggatagag-aaaattgttttaagtgcttttgttaagtattggtgcattttcca 366  Q
    ||||||||||||||||||||  ||||     |||||||||||||||||| |||| ||||| ||||||||| ||||||||| |||||| |||||| ||||    
T  2868739 agtcatttgctcatttcacacatattaagaaaaatgtataaatgaaggagagagaaaaatggttttaagttcttttgttatgtattgctgcattctcca 2868641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 300 - 377
Target Start/End: Original strand, 11251100 - 11251178
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttccattagcataaat 377  Q
    ||||||||||||||| || ||| |||| || ||||||||||| |||||||||||||||||||| |||| || |||||||    
T  11251100 aaatgtataaatgaatgagagaaaaaaatgattttaagtgctcttgttaagtattggtgcattctccactatcataaat 11251178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 249 - 377
Target Start/End: Original strand, 17776911 - 17777045
Alignment:
Q  249 tactccctcagtcctaaattcacttagtcatttgctcatttcacatttatt-----aaatgtataaatgaaggatagag-aaaattgttttaagtgcttt 342  Q
    |||| |||| |||| | ||| ||| ||||||||||||||||||||  ||||     ||||||||||||||| || |||| ||||| |||||| |||||||    
T  17776911 tacttcctccgtcccagattaactgagtcatttgctcatttcacacgtattaaaaaaaatgtataaatgaatgagagagaaaaatggttttaggtgcttt 17777010  T
Q  343 tgttaagtattggtgcattttccattagcataaat 377  Q
    | ||||||||| ||||||| |||| || |||||||    
T  17777011 ttttaagtatttgtgcattctccactaccataaat 17777045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 249 - 377
Target Start/End: Original strand, 19078212 - 19078346
Alignment:
Q  249 tactccctcagtcctaaattcacttagtcatttgctcatttcacatttatt-----aaatgtataaatgaaggatagag-aaaattgttttaagtgcttt 342  Q
    |||| |||| |||| | ||| ||| ||||||||||||||||||||  ||||     ||||||||||||||| || |||| ||||| |||||| |||||||    
T  19078212 tacttcctccgtcccagattaactgagtcatttgctcatttcacacgtattaaaaaaaatgtataaatgaatgagagagaaaaatggttttaggtgcttt 19078311  T
Q  343 tgttaagtattggtgcattttccattagcataaat 377  Q
    | ||||||||| ||||||| |||| || |||||||    
T  19078312 ttttaagtatttgtgcattctccactaccataaat 19078346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 300 - 377
Target Start/End: Original strand, 21296476 - 21296554
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttccattagcataaat 377  Q
    |||||||||||||||||| |||| ||| || |||||| |||| |||||||||||||||||||||| || || |||||||    
T  21296476 aaatgtataaatgaaggagagaggaaaatgattttaaatgctcttgttaagtattggtgcatttttcactatcataaat 21296554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 300 - 353
Target Start/End: Original strand, 26134676 - 26134730
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaa-ttgttttaagtgcttttgttaagtatt 353  Q
    |||||||||||||||||| |||||||| |||||||||||||| ||||||||||||    
T  26134676 aaatgtataaatgaaggagagagaaaaattgttttaagtgctcttgttaagtatt 26134730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 300 - 377
Target Start/End: Complemental strand, 33994791 - 33994713
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttccattagcataaat 377  Q
    |||||||||||||||||| |||||||| |  ||||||||||  |||||||||||||||||||| |||| || |||||||    
T  33994791 aaatgtataaatgaaggagagagaaaaataattttaagtgcacttgttaagtattggtgcattctccactatcataaat 33994713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 323 - 407
Target Start/End: Complemental strand, 48744369 - 48744288
Alignment:
Q  323 aaaattgttttaagtgcttttgttaagtattggtgcattttccattagcataaatataataaattgaaatatattgaattgaaaa 407  Q
    ||||| ||||||||||| |||||||||||||| |||||| |||| || |||||||    |||| |||||||||||||||||||||    
T  48744369 aaaatagttttaagtgcatttgttaagtattgatgcattctccactatcataaat---gtaaagtgaaatatattgaattgaaaa 48744288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 271 - 366
Target Start/End: Complemental strand, 10855162 - 10855061
Alignment:
Q  271 cttagtcatttgctcatttcacatttat-----taaatgtataaatgaaggatagag-aaaattgttttaagtgcttttgttaagtattggtgcattttc 364  Q
    |||||||||||| ||||||||||  |||     ||||||||||||||||||| |||| ||||| |||||||||| |||| ||| ||||||||||||| ||    
T  10855162 cttagtcatttgatcatttcacacgtattaagataaatgtataaatgaaggagagagaaaaatagttttaagtgtttttattatgtattggtgcattatc 10855063  T
Q  365 ca 366  Q
    ||    
T  10855062 ca 10855061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 300 - 366
Target Start/End: Original strand, 32023073 - 32023141
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaatt--gttttaagtgcttttgttaagtattggtgcattttcca 366  Q
    |||||||||||||||||| | |||||| |  ||||||||| ||||||||||||||||||||||| ||||    
T  32023073 aaatgtataaatgaaggagatagaaaaataagttttaagtacttttgttaagtattggtgcattctcca 32023141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 300 - 402
Target Start/End: Original strand, 32827277 - 32827377
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaatt-gttttaagtgcttttgttaagtattggtgcattttccattagcataaatataataaattgaaatatattg 398  Q
    |||||||||||||||||| ||| |||| | |||||||||||  |||||| ||||||||||||| |||| || |||||||    |||| ||||||||||||    
T  32827277 aaatgtataaatgaaggagagaaaaaaatagttttaagtgcacttgttacgtattggtgcattctccactatcataaat---gtaaagtgaaatatattg 32827373  T
Q  399 aatt 402  Q
    ||||    
T  32827374 aatt 32827377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 323 - 403
Target Start/End: Complemental strand, 41031685 - 41031605
Alignment:
Q  323 aaaattgttttaagtgcttttgttaagtattggtgcattttccattagcataaatataataaattgaaatatattgaattg 403  Q
    ||||| |||||||||||  ||||||||||||||||||||||||| || |||||  |   |||| |||||||||||||||||    
T  41031685 aaaatagttttaagtgcacttgttaagtattggtgcattttccactatcataataaatgtaaagtgaaatatattgaattg 41031605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 300 - 359
Target Start/End: Original strand, 39365010 - 39365071
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaa--ttgttttaagtgcttttgttaagtattggtgca 359  Q
    |||||||||||| ||||| ||||||||  | |||||||||||| ||||||||||||||||||    
T  39365010 aaatgtataaataaaggagagagaaaaagtggttttaagtgctcttgttaagtattggtgca 39365071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 250 - 377
Target Start/End: Original strand, 14756032 - 14756165
Alignment:
Q  250 actccctcagtcctaaattcacttagtcatttgctcatttcacatttatt-----aaatgtataaatgaaggatagag-aaaattgttttaagtgctttt 343  Q
    |||||||| |||||| ||| ||| |||||||||||||||| |||  ||||     |||||||||| | ||||| |||| |||||  ||||||||||| ||    
T  14756032 actccctctgtcctagattaactgagtcatttgctcattttacacatattaagaaaaatgtataattaaaggagagagaaaaataattttaagtgctctt 14756131  T
Q  344 gttaagtattggtgcattttccattagcataaat 377  Q
    |||||||| |||| |||| |||| || |||||||    
T  14756132 gttaagtactggtacattctccactatcataaat 14756165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 330 - 404
Target Start/End: Original strand, 54458313 - 54458384
Alignment:
Q  330 ttttaagtgcttttgttaagtattggtgcattttccattagcataaatataataaattgaaatatattgaattga 404  Q
    ||||||||| ||||||||||||| |||||||| ||||||| |||||||    |||| || |||||||||||||||    
T  54458313 ttttaagtgattttgttaagtatgggtgcattctccattatcataaat---gtaaagtggaatatattgaattga 54458384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 304 - 366
Target Start/End: Original strand, 36097632 - 36097695
Alignment:
Q  304 gtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttcca 366  Q
    |||||||||||||| |||||||| || |||||||| || ||||||||||| |||||||| ||||    
T  36097632 gtataaatgaaggagagagaaaaatggttttaagtactcttgttaagtatcggtgcattctcca 36097695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 300 - 361
Target Start/End: Complemental strand, 8706280 - 8706218
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcatt 361  Q
    |||||||||||||||| | ||||| || || ||||||||||| ||||||||||||| ||||||    
T  8706280 aaatgtataaatgaagaagagagagaaatgattttaagtgctcttgttaagtattgatgcatt 8706218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 300 - 361
Target Start/End: Complemental strand, 9058167 - 9058105
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcatt 361  Q
    |||||||||||||||| | ||||| || || ||||||||||| ||||||||||||| ||||||    
T  9058167 aaatgtataaatgaagaagagagagaaatgattttaagtgctcttgttaagtattgatgcatt 9058105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 300 - 361
Target Start/End: Complemental strand, 54783097 - 54783035
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaatt-gttttaagtgcttttgttaagtattggtgcatt 361  Q
    ||||||||||||||| || |||||||| | |||||||||||  || |||||||||||||||||    
T  54783097 aaatgtataaatgaatgagagagaaaaatagttttaagtgcacttcttaagtattggtgcatt 54783035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 300 - 361
Target Start/End: Original strand, 55415412 - 55415474
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcatt 361  Q
    |||||||||||| || || |||||||| || |||||| || ||||||||||||||||||||||    
T  55415412 aaatgtataaataaatgagagagaaaaatggttttaactgtttttgttaagtattggtgcatt 55415474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 300 - 356
Target Start/End: Original strand, 1772079 - 1772136
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggt 356  Q
    |||||||||||| ||||| |||||||| || ||||||||| | |||||||||||||||    
T  1772079 aaatgtataaataaaggagagagaaaaatggttttaagtgttcttgttaagtattggt 1772136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 300 - 363
Target Start/End: Complemental strand, 49006331 - 49006267
Alignment:
Q  300 aaatgtataaatgaaggataga-gaaaattgttttaagtgcttttgttaagtattggtgcatttt 363  Q
    |||||||||||||||||| | | |||||| |||||||||| ||| ||||||||||| | ||||||    
T  49006331 aaatgtataaatgaaggagatatgaaaatagttttaagtgttttagttaagtattgatccatttt 49006267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 302 - 349
Target Start/End: Original strand, 54845491 - 54845539
Alignment:
Q  302 atgtataaatgaaggatagag-aaaattgttttaagtgcttttgttaag 349  Q
    |||||||||||||||| |||| ||||| |||||||||| ||||||||||    
T  54845491 atgtataaatgaaggagagagaaaaatagttttaagtgtttttgttaag 54845539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 7e-17; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 300 - 377
Target Start/End: Complemental strand, 28572341 - 28572264
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaattgttttaagtgcttttgttaagtattggtgcattttccattagcataaat 377  Q
    |||||||||||| ||||| |||||||||  ||||||||||| |||||||||||||||||||| |||| || |||||||    
T  28572341 aaatgtataaataaaggagagagaaaatgattttaagtgctcttgttaagtattggtgcattctccactatcataaat 28572264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 300 - 404
Target Start/End: Complemental strand, 23685093 - 23684991
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaatt-gttttaagtgcttttgttaagtattggtgcattttccattagcataaatataataaattgaaatatattg 398  Q
    |||||||||||| ||||| |||||||||| |||||||||| |||||||||||||| ||||||| |||| || |||||||     ||| ||||||||||||    
T  23685093 aaatgtataaataaaggagagagaaaattagttttaagtgtttttgttaagtattagtgcattctccactatcataaat---gcaaagtgaaatatattg 23684997  T
Q  399 aattga 404  Q
    ||||||    
T  23684996 aattga 23684991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 300 - 403
Target Start/End: Original strand, 30757541 - 30757642
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaatt-gttttaagtgcttttgttaagtattggtgcattttccattagcataaatataataaattgaaatatattg 398  Q
    |||||||||||||||||| |||||||| | |||||||||||  ||||||||||||  ||||||||||| || |||||||    ||||||| |||||||||    
T  30757541 aaatgtataaatgaaggagagagaaaaatagttttaagtgcacttgttaagtattaatgcattttccactatcataaat---gtaaattggaatatattg 30757637  T
Q  399 aattg 403  Q
    |||||    
T  30757638 aattg 30757642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 300 - 404
Target Start/End: Complemental strand, 28301568 - 28301466
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttccattagcataaatataataaattgaaatatattg 398  Q
    |||||||||||||||||| |||||||| || ||||||||||| |||||||||||||||  ||| |||| || |||||||     ||| ||||||||||||    
T  28301568 aaatgtataaatgaaggaaagagaaaaatggttttaagtgctcttgttaagtattggtctattctccactatcataaat---gcaaagtgaaatatattg 28301472  T
Q  399 aattga 404  Q
    ||||||    
T  28301471 aattga 28301466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 300 - 377
Target Start/End: Complemental strand, 2882119 - 2882041
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttccattagcataaat 377  Q
    ||||||||||||||| || | |||||| || ||||||||||| |||||||||||||||||||| |||| || |||||||    
T  2882119 aaatgtataaatgaaagagatagaaaaatgattttaagtgctcttgttaagtattggtgcattctccactatcataaat 2882041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 300 - 407
Target Start/End: Original strand, 24775781 - 24775886
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttccattagcataaatataataaattgaaatatattg 398  Q
    |||||||||||||||||| |||||||| |  ||||||||||  |||||||||||||||| ||| |||| || |||||||    |||| ||||||||||||    
T  24775781 aaatgtataaatgaaggagagagaaaaataattttaagtgcacttgttaagtattggtgtattctccactatcataaat---gtaaagtgaaatatattg 24775877  T
Q  399 aattgaaaa 407  Q
    |||| ||||    
T  24775878 aattaaaaa 24775886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 274 - 377
Target Start/End: Original strand, 43950390 - 43950499
Alignment:
Q  274 agtcatttgctcatttcacatttattaaa-----tgtataaatgaaggatagagaaaatt-gttttaagtgcttttgttaagtattggtgcattttccat 367  Q
    |||||||| ||||||||||| ||||||||     ||||||| |||| || |||||||| | ||||||| || ||||||||||||||| || |||||||||    
T  43950390 agtcatttactcatttcacacttattaaaaaaaatgtataagtgaaagagagagaaaaatagttttaaatgtttttgttaagtattgatgtattttccat 43950489  T
Q  368 tagcataaat 377  Q
    || |||||||    
T  43950490 taacataaat 43950499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 247 - 361
Target Start/End: Complemental strand, 28527156 - 28527036
Alignment:
Q  247 aatactccctcagtcctaaattcacttagtcatttgctcatttcacatttatt-----aaatgtataaatgaagga-tagagaaaattgttttaagtgct 340  Q
    |||||||| || ||||  |||| ||| ||||||||||||||||||||  ||||     ||||||||||||||||||  | | ||||| ||||||||||||    
T  28527156 aatactccatccgtcccgaattaactgagtcatttgctcatttcacacatattaagaaaaatgtataaatgaaggagaaaaaaaaatggttttaagtgct 28527057  T
Q  341 tttgttaagtattggtgcatt 361  Q
     |||||||||||| |||||||    
T  28527056 cttgttaagtattcgtgcatt 28527036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 300 - 366
Target Start/End: Original strand, 15859318 - 15859385
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaatt-gttttaagtgcttttgttaagtattggtgcattttcca 366  Q
    |||| ||||||||||||| |||||||| | ||||||||| ||||||||||||||||| ||||| ||||    
T  15859318 aaatatataaatgaaggagagagaaaaatagttttaagtacttttgttaagtattggggcattctcca 15859385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 300 - 366
Target Start/End: Complemental strand, 36155647 - 36155580
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttcca 366  Q
    |||||||||||||||||| ||| |||| || ||||||||||| |||||||||||||||| ||| ||||    
T  36155647 aaatgtataaatgaaggagagaaaaaaatgattttaagtgctcttgttaagtattggtgtattctcca 36155580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 300 - 354
Target Start/End: Complemental strand, 40965148 - 40965093
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaatt-gttttaagtgcttttgttaagtattg 354  Q
    |||||||||||||||||| |||||||| | ||||||||||| ||||||||||||||    
T  40965148 aaatgtataaatgaaggagagagaaaaatagttttaagtgcatttgttaagtattg 40965093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 300 - 377
Target Start/End: Complemental strand, 565223 - 565145
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttccattagcataaat 377  Q
    ||||||||| |||||||| | |||||| || ||||||||| | |||||||||||||||||||| |||| || |||||||    
T  565223 aaatgtatatatgaaggagaaagaaaaatgattttaagtgttcttgttaagtattggtgcattctccactatcataaat 565145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 300 - 377
Target Start/End: Complemental strand, 2756808 - 2756730
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaa-ttgttttaagtgcttttgttaagtattggtgcattttccattagcataaat 377  Q
    |||||||| ||||||| | |||||||| || ||||||||||| |||| ||||||| |||||||| |||||| |||||||    
T  2756808 aaatgtattaatgaagaagagagaaaaattattttaagtgctcttgtcaagtattagtgcatttaccattatcataaat 2756730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 300 - 377
Target Start/End: Complemental strand, 3100534 - 3100456
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttccattagcataaat 377  Q
    |||| ||||||||||||| |||||||| || ||||||||| | ||||||||||||| |||||| |||| || |||||||    
T  3100534 aaatatataaatgaaggagagagaaaaatgattttaagtgatcttgttaagtattgctgcattctccactatcataaat 3100456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 377
Target Start/End: Original strand, 18181210 - 18181264
Alignment:
Q  323 aaaattgttttaagtgcttttgttaagtattggtgcattttccattagcataaat 377  Q
    ||||| ||||||||||||||||||| ||||||||||||| |||| || |||||||    
T  18181210 aaaatggttttaagtgcttttgttatgtattggtgcattctccactatcataaat 18181264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 305 - 366
Target Start/End: Original strand, 28108353 - 28108415
Alignment:
Q  305 tataaatgaaggatagagaaaatt-gttttaagtgcttttgttaagtattggtgcattttcca 366  Q
    ||||||||||||| |||||||| | |||||||||||  |||||||||||||||||||| ||||    
T  28108353 tataaatgaaggagagagaaaaatagttttaagtgcacttgttaagtattggtgcattctcca 28108415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 300 - 403
Target Start/End: Original strand, 28925821 - 28925922
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaatt-gttttaagtgcttttgttaagtattggtgcattttccattagcataaatataataaattgaaatatattg 398  Q
    |||||||||||| ||||| |||||||| | |||||||||||  ||||||||||||| |||||| |||| || ||||   ||  |||| ||||||||||||    
T  28925821 aaatgtataaataaaggagagagaaaaatagttttaagtgcacttgttaagtattgatgcattctccactatcata---attgtaaagtgaaatatattg 28925917  T
Q  399 aattg 403  Q
    |||||    
T  28925918 aattg 28925922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 300 - 407
Target Start/End: Original strand, 43077699 - 43077804
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaatt-gttttaagtgcttttgttaagtattggtgcattttccattagcataaatataataaattgaaatatattg 398  Q
    ||||||||||||||| || |||||||| | ||||||| ||   ||||||| ||||||||||||||||| |  ||||||| |||   | ||||||||||||    
T  43077699 aaatgtataaatgaatgagagagaaaaatagttttaaatgtacttgttaactattggtgcattttccactgtcataaatgtaa---agtgaaatatattg 43077795  T
Q  399 aattgaaaa 407  Q
    |||||||||    
T  43077796 aattgaaaa 43077804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 300 - 377
Target Start/End: Original strand, 7649949 - 7650026
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaattgttttaagtgcttttgttaagtattggtgcattttccattagcataaat 377  Q
    |||||||||||||||||| || | ||| | ||||||||||| |||||||||| || |||||| |||| || |||||||    
T  7649949 aaatgtataaatgaaggagagcgcaaaatattttaagtgctcttgttaagtactgatgcattctccactatcataaat 7650026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 300 - 356
Target Start/End: Complemental strand, 33755391 - 33755334
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggt 356  Q
    |||||||||||||||||| |||||||| || ||||||||| | |||||||||||||||    
T  33755391 aaatgtataaatgaaggagagagaaaaatgattttaagtgttattgttaagtattggt 33755334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 300 - 377
Target Start/End: Original strand, 13375161 - 13375240
Alignment:
Q  300 aaatgtataaatgaaggatagaga-aaattgttttaagtgcttttgttaa-gtattggtgcattttccattagcataaat 377  Q
    |||||||||||||||||| ||||| ||||  ||||||||||  ||||||| ||||||||||||| |||| || |||||||    
T  13375161 aaatgtataaatgaaggagagagataaataattttaagtgcagttgttaaggtattggtgcattctccactatcataaat 13375240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 300 - 404
Target Start/End: Original strand, 37247857 - 37247959
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaatt-gttttaagtgcttttgttaagtattggtgcattttccattagcataaatataataaattgaaatatattg 398  Q
    ||||||||||| |||||| ||| |||| | |||||||||||| |||||||||||||||  ||| |||| || |||||||     ||| ||||||||||||    
T  37247857 aaatgtataaaagaaggaaagaaaaaaatagttttaagtgctcttgttaagtattggtctattctccactatcataaat---gcaaagtgaaatatattg 37247953  T
Q  399 aattga 404  Q
    ||||||    
T  37247954 aattga 37247959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 300 - 361
Target Start/End: Original strand, 5211931 - 5211993
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaatt-gttttaagtgcttttgttaagtattggtgcatt 361  Q
    |||||||||||||||| | || ||||| | |||||||||||| |||||||||||| |||||||    
T  5211931 aaatgtataaatgaagaagagggaaaaatagttttaagtgctcttgttaagtatttgtgcatt 5211993  T

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Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 300 - 381
Target Start/End: Original strand, 36103274 - 36103356
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttccattagcataaatataa 381  Q
    ||||||| |||||||||| |||||||| || ||||||||| | ||||||||||| | |||||| |||| || ||| |||||||    
T  36103274 aaatgtacaaatgaaggagagagaaaaatgattttaagtgttcttgttaagtatcgatgcattctccactatcatgaatataa 36103356  T

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Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 300 - 354
Target Start/End: Complemental strand, 41436212 - 41436158
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaattgttttaagtgcttttgttaagtattg 354  Q
    |||||||||||||||  | |||||||||  ||||||||| |||||||||||||||    
T  41436212 aaatgtataaatgaattagagagaaaataattttaagtgtttttgttaagtattg 41436158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 300 - 377
Target Start/End: Original strand, 44534456 - 44534534
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttccattagcataaat 377  Q
    |||||||||||||||||| ||| |||| || |||||| || | ||||||||||||||| |||| |||| || |||||||    
T  44534456 aaatgtataaatgaaggacagaaaaaaatgattttaaatgttcttgttaagtattggtacattctccactatcataaat 44534534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 404
Target Start/End: Original strand, 435053 - 435153
Alignment:
Q  302 atgtataaatgaaggatagagaaaatt-gttttaagtgcttttgttaagtattggtgcattttccattagcataaatataataaattgaaatatattgaa 400  Q
    ||||||||||||| || ||| |||| | |||||||||||  ||||||| |||| ||||||| |||| || |||||||    |||| ||||||||||||||    
T  435053 atgtataaatgaaagagagacaaaaatagttttaagtgcacttgttaaatattagtgcattctccactatcataaat---gtaaagtgaaatatattgaa 435149  T
Q  401 ttga 404  Q
    ||||    
T  435150 ttga 435153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 486
Target Start/End: Original strand, 5007686 - 5007759
Alignment:
Q  413 aatggataagttattttaaaacaataattttttacaaaatgatcatttattaaaggacggaatgagtagcaaat 486  Q
    |||||||  |||||||||  | |||| |||||||||||||||||| |||||| ||||||||  ||||| |||||    
T  5007686 aatggatcggttattttaggataatatttttttacaaaatgatcacttattataggacggagggagtaacaaat 5007759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 3e-16; HSPs: 34)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 307 - 404
Target Start/End: Complemental strand, 17342955 - 17342860
Alignment:
Q  307 taaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttccattagcataaatataataaattgaaatatattgaattga 404  Q
    ||||||||||| || ||||| || ||||||||| |||||||||||||||||||||| ||||||| |||||||   | ||| ||||||||||||||||||    
T  17342955 taaatgaaggagagggaaaaatggttttaagtgtttttgttaagtattggtgcattctccattatcataaat---acaaagtgaaatatattgaattga 17342860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 300 - 404
Target Start/End: Complemental strand, 32587899 - 32587797
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttccattagcataaatataataaattgaaatatattg 398  Q
    |||||||||||||||||  |||||||| |  ||||||||| ||||||||||||||| |||||||||||||| |||||||     ||| ||||||||||||    
T  32587899 aaatgtataaatgaaggtgagagaaaaataattttaagtgtttttgttaagtattgatgcattttccattatcataaat---gcaaagtgaaatatattg 32587803  T
Q  399 aattga 404  Q
    ||||||    
T  32587802 aattga 32587797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 300 - 403
Target Start/End: Original strand, 50267412 - 50267513
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaatt-gttttaagtgcttttgttaagtattggtgcattttccattagcataaatataataaattgaaatatattg 398  Q
    ||||||||||||||| |  |||||||| | |||||||||||  |||||||||||||||||||| ||||||| |||||||    |||| ||||||||||||    
T  50267412 aaatgtataaatgaaagtgagagaaaaatagttttaagtgcacttgttaagtattggtgcattctccattatcataaat---gtaaagtgaaatatattg 50267508  T
Q  399 aattg 403  Q
    |||||    
T  50267509 aattg 50267513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 300 - 377
Target Start/End: Original strand, 52830388 - 52830466
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttccattagcataaat 377  Q
    |||||||||||||||||| |||||||| |  |||| ||||| |||||||||||||||||||||||||| || |||||||    
T  52830388 aaatgtataaatgaaggagagagaaaaataattttgagtgcatttgttaagtattggtgcattttccactatcataaat 52830466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 301 - 407
Target Start/End: Complemental strand, 26756109 - 26756005
Alignment:
Q  301 aatgtataaatgaaggatagag-aaaattgttttaagtgcttttgttaagtattggtgcattttccattagcataaatataataaattgaaatatattga 399  Q
    |||||||||||||| || |||| ||||| |||||||||||  ||||||||||||| |||||| |||| || |||||||   ||||| || ||||||||||    
T  26756109 aatgtataaatgaatgagagaggaaaatagttttaagtgcacttgttaagtattgatgcattctccactatcataaat---ataaagtgtaatatattga 26756013  T
Q  400 attgaaaa 407  Q
    ||||||||    
T  26756012 attgaaaa 26756005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 300 - 407
Target Start/End: Original strand, 28277009 - 28277117
Alignment:
Q  300 aaatgtataaatgaaggatag----agaaaattgttttaagtgcttttgttaagtattggtgcattttccattagcataaatataataaattgaaatata 395  Q
    |||||||||||||||||| ||    | ||||| |||||||||||  |||||||||||||||||||| |||| || |||||||    |||| |||||||||    
T  28277009 aaatgtataaatgaaggagagaaaaaaaaaatagttttaagtgcacttgttaagtattggtgcattctccagtatcataaat---gtaaagtgaaatata 28277105  T
Q  396 ttgaattgaaaa 407  Q
    ||||||||||||    
T  28277106 ttgaattgaaaa 28277117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 300 - 366
Target Start/End: Complemental strand, 32348352 - 32348285
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttcca 366  Q
    |||||||||||||||||| |||||||| || ||||||||||| |||||||||||||||  ||||||||    
T  32348352 aaatgtataaatgaaggagagagaaaaatggttttaagtgctcttgttaagtattggtctattttcca 32348285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 248 - 361
Target Start/End: Complemental strand, 49945123 - 49945004
Alignment:
Q  248 atactccctcagtcctaaattcacttagtcatttgctcatttcacatttatt-----aaatgtataaatgaaggatagag-aaaattgttttaagtgctt 341  Q
    |||||| ||| |||||  ||| ||| ||||||||||||||||||||  ||||     |||||||||||||||| | |||| ||||| ||||||||||||     
T  49945123 atactctctctgtcctggattaactaagtcatttgctcatttcacacatattaagaaaaatgtataaatgaagaagagagaaaaatggttttaagtgctc 49945024  T
Q  342 ttgttaagtattggtgcatt 361  Q
    |||||||||||| |||||||    
T  49945023 ttgttaagtatttgtgcatt 49945004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 299 - 377
Target Start/End: Original strand, 51749156 - 51749235
Alignment:
Q  299 taaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttccattagcataaat 377  Q
    ||||||||||||||||||| |||||||| || ||||||||| | |||||||||||||||  ||| ||||||| |||||||    
T  51749156 taaatgtataaatgaaggagagagaaaactgattttaagtgttcttgttaagtattggtttattctccattatcataaat 51749235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 300 - 377
Target Start/End: Original strand, 3555529 - 3555607
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttccattagcataaat 377  Q
    ||||||||||||||||||||| ||||| || |||||||||||||| ||||||||||||  ||| |||| || |||||||    
T  3555529 aaatgtataaatgaaggatagggaaaaatggttttaagtgctttttttaagtattggtctattctccactatcataaat 3555607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 300 - 377
Target Start/End: Complemental strand, 42926268 - 42926190
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttccattagcataaat 377  Q
    ||||||||||||||| || |||||||| || ||||||||| ||||||||||||| |||||||| |||| || |||||||    
T  42926268 aaatgtataaatgaatgaaagagaaaaatgattttaagtgtttttgttaagtatcggtgcattctccactatcataaat 42926190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 300 - 381
Target Start/End: Original strand, 21304781 - 21304862
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaattgttttaagtgcttttgttaagtattggtgcattttccattagcataaatataa 381  Q
    ||||||||||||||| || ||| ||||||||||| ||||  ||||| |||||||| |||||||| | ||| |||||||||||    
T  21304781 aaatgtataaatgaaagagagataaaattgttttgagtgtctttgtcaagtattgatgcatttttctttatcataaatataa 21304862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 404 - 451
Target Start/End: Original strand, 13500862 - 13500909
Alignment:
Q  404 aaaaagtgaaatggataagttattttaaaacaataattttttacaaaa 451  Q
    |||||||||||||||||||||||||||  |||||| ||||||||||||    
T  13500862 aaaaagtgaaatggataagttattttaggacaatatttttttacaaaa 13500909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 300 - 400
Target Start/End: Original strand, 19532893 - 19532991
Alignment:
Q  300 aaatgtataaatgaaggatagag-aaaattgttttaagtgcttttgttaagtattggtgcattttccattagcataaatataataaattgaaatatattg 398  Q
    |||| |||||||||||||||||| ||||| ||||||||||   ||||||||||||||| |||| |||| || |||||||    |||| ||||||||||||    
T  19532893 aaatatataaatgaaggatagagaaaaatagttttaagtgtacttgttaagtattggttcattctccactatcataaat---gtaaagtgaaatatattg 19532989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 260 - 377
Target Start/End: Complemental strand, 27391526 - 27391403
Alignment:
Q  260 tcctaaattcacttagtcatttgctcatttcacatttatta-----aatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtatt 353  Q
    ||||||||| | | ||||||||| ||| |||||| ||||||     ||||||||| ||||||| |||||||| || ||||||||||| || |||||||||    
T  27391526 tcctaaattaagtgagtcatttgttcaattcacacttattacgaaaaatgtataagtgaaggagagagaaaaatgattttaagtgctcttattaagtatt 27391427  T
Q  354 ggtgcattttccattagcataaat 377  Q
    ||| ||||| | |||| |||||||    
T  27391426 ggttcatttactattatcataaat 27391403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 249 - 378
Target Start/End: Complemental strand, 46536530 - 46536395
Alignment:
Q  249 tactccctcagtcctaaattcacttagtcatttgctcatttcacatttattaa-----atgtataaatgaaggatagagaaaattg-ttttaagtgcttt 342  Q
    ||||||||| ||||  |||| ||| |||||||||||| |||||||| ||||||     || |||| |||||||| |||||||| || ||||||||||| |    
T  46536530 tactccctccgtcccgaattaactgagtcatttgctcgtttcacatgtattaagaaaaatttatagatgaaggaaagagaaaaatggttttaagtgctct 46536431  T
Q  343 tgttaagtattggtgcattttccattagcataaata 378  Q
    |||||| ||||| || ||| |||| || ||||||||    
T  46536430 tgttaaatattgttgtattctccactatcataaata 46536395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 300 - 377
Target Start/End: Original strand, 17724688 - 17724766
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaa-ttgttttaagtgcttttgttaagtattggtgcattttccattagcataaat 377  Q
    |||||||  ||||||||| |||||||| |||||||||||||| ||||||| ||||| |||||| |||| || |||||||    
T  17724688 aaatgtaataatgaaggagagagaaaaattgttttaagtgctcttgttaattattgatgcattctccactaccataaat 17724766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 300 - 377
Target Start/End: Complemental strand, 28839473 - 28839395
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaatt-gttttaagtgcttttgttaagtattggtgcattttccattagcataaat 377  Q
    |||||||||||||||||| |||||||| | ||||||| |||| |||||||||||||||  ||| |||| || |||||||    
T  28839473 aaatgtataaatgaaggagagagaaaaatagttttaaatgctcttgttaagtattggtctattctccactatcataaat 28839395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 300 - 403
Target Start/End: Original strand, 36467169 - 36467270
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaatt-gttttaagtgcttttgttaagtattggtgcattttccattagcataaatataataaattgaaatatattg 398  Q
    ||||||||||||||| || |||||||| | |||||||||||  |||||||||||||||| ||| |||| ||  ||||||    |||| ||||||||||||    
T  36467169 aaatgtataaatgaatgagagagaaaaatagttttaagtgcacttgttaagtattggtggattctccactatgataaat---gtaaagtgaaatatattg 36467265  T
Q  399 aattg 403  Q
    |||||    
T  36467266 aattg 36467270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 300 - 361
Target Start/End: Complemental strand, 52432446 - 52432384
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcatt 361  Q
    |||||||||||||||| | |||||||| || ||||||||||| ||||||||||||| ||||||    
T  52432446 aaatgtataaatgaagaagagagaaaaatgattttaagtgctcttgttaagtattgatgcatt 52432384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 300 - 361
Target Start/End: Complemental strand, 2571495 - 2571435
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaattgttttaagtgcttttgttaagtattggtgcatt 361  Q
    ||||||||||||||| || ||||||||| ||||| |||| | ||||||||||||||||||||    
T  2571495 aaatgtataaatgaaagagagagaaaatagttttgagtg-tcttgttaagtattggtgcatt 2571435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 300 - 357
Target Start/End: Complemental strand, 43895980 - 43895923
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaattgttttaagtgcttttgttaagtattggtg 357  Q
    ||||||||| ||||| || ||||||||| |||||| ||| ||||||||||||||||||    
T  43895980 aaatgtatagatgaaagagagagaaaatagttttatgtgtttttgttaagtattggtg 43895923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 300 - 353
Target Start/End: Original strand, 10370158 - 10370213
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaa--ttgttttaagtgcttttgttaagtatt 353  Q
    |||||||||||| ||||| ||||||||  | |||||||||||||||||||||||||    
T  10370158 aaatgtataaataaaggagagagaaaaaatagttttaagtgcttttgttaagtatt 10370213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 279 - 377
Target Start/End: Complemental strand, 34814077 - 34813973
Alignment:
Q  279 tttgctcatttcacatttattaa-----atgtataaatgaaggatagagaaaatt-gttttaagtgcttttgttaagtattggtgcattttccattagca 372  Q
    ||||||||||||||| |||||||     |||||| | ||||||| |||||||| | |||||||||| | |||||||||||| ||||||||  ||||| ||    
T  34814077 tttgctcatttcacacttattaagaaaaatgtattagtgaaggagagagaaaaatagttttaagtgttcttgttaagtattagtgcatttatcattatca 34813978  T
Q  373 taaat 377  Q
    |||||    
T  34813977 taaat 34813973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 323 - 366
Target Start/End: Complemental strand, 8773352 - 8773309
Alignment:
Q  323 aaaattgttttaagtgcttttgttaagtattggtgcattttcca 366  Q
    ||||| |||||||||||| |||||||||||||||||||| ||||    
T  8773352 aaaatagttttaagtgctcttgttaagtattggtgcattctcca 8773309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 300 - 377
Target Start/End: Original strand, 45889221 - 45889300
Alignment:
Q  300 aaatgtataaatgaa-ggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttccattagcataaat 377  Q
    ||||||||||||||| ||| |||||||| || ||||||||||| ||||||| |||||||  ||| ||||||| |||||||    
T  45889221 aaatgtataaatgaaaggagagagaaaaatggttttaagtgctcttgttaactattggtctattctccattatcataaat 45889300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 300 - 377
Target Start/End: Original strand, 5040549 - 5040627
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttccattagcataaat 377  Q
    ||||||||||||||| || |||||||| || ||||| ||| | ||||||||||||| |||||| |||| || |||||||    
T  5040549 aaatgtataaatgaatgagagagaaaaatggttttaggtgatcttgttaagtattgatgcattctccactatcataaat 5040627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 300 - 377
Target Start/End: Complemental strand, 5442474 - 5442396
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttccattagcataaat 377  Q
    ||||||||||||||| || |||||||| || ||||||||  | |||||||||||| ||||||| |||| || |||||||    
T  5442474 aaatgtataaatgaatgagagagaaaaatggttttaagttatcttgttaagtattagtgcattctccactatcataaat 5442396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 249 - 361
Target Start/End: Complemental strand, 16040267 - 16040149
Alignment:
Q  249 tactccctcagtcctaaattcacttagtcatttgctcatttcacatttatt-----aaatgtataaatgaaggatagag-aaaattgttttaagtgcttt 342  Q
    ||||||||| |||| || || | | ||||||||||||||||||||||||||     |||| ||| | | ||||| |||| ||||| ||||||||||  ||    
T  16040267 tactccctccgtccaaatttaattgagtcatttgctcatttcacatttattaagaaaaatatattagtcaaggagagagaaaaatggttttaagtgtctt 16040168  T
Q  343 tgttaagtattggtgcatt 361  Q
    |||||||||||||| ||||    
T  16040167 tgttaagtattggttcatt 16040149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 323 - 377
Target Start/End: Original strand, 34877088 - 34877142
Alignment:
Q  323 aaaattgttttaagtgcttttgttaagtattggtgcattttccattagcataaat 377  Q
    |||||||||||||||||| | ||||| |||| |||||||||| |||| |||||||    
T  34877088 aaaattgttttaagtgctctggttaaatattcgtgcattttctattatcataaat 34877142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 300 - 356
Target Start/End: Complemental strand, 8327851 - 8327794
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggt 356  Q
    ||||||||||||||| || |||||||| |  ||||||||||| |||||||||||||||    
T  8327851 aaatgtataaatgaatgagagagaaaaataattttaagtgctcttgttaagtattggt 8327794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 381
Target Start/End: Original strand, 40019059 - 40019116
Alignment:
Q  324 aaattgttttaagtgcttttgttaagtattggtgcattttccattagcataaatataa 381  Q
    |||||||||||| |  ||||||||| |||||||||||||  ||||| |||||||||||    
T  40019059 aaattgttttaaatctttttgttaaatattggtgcatttaacattatcataaatataa 40019116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 300 - 376
Target Start/End: Complemental strand, 40019893 - 40019816
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaa-ttgttttaagtgcttttgttaagtattggtgcattttccattagcataaa 376  Q
    |||||||||| |||| || |||||||| |||||||||||||| |||| ||||||| ||| |||  |||||| ||||||    
T  40019893 aaatgtataagtgaatgagagagaaaaattgttttaagtgctcttgtcaagtatttgtgtattcaccattatcataaa 40019816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 279 - 377
Target Start/End: Original strand, 3718798 - 3718901
Alignment:
Q  279 tttgctcatttcacatttattaa-----atgtataaatgaaggatagagaaaatt-gttttaagtgcttttgttaagtattggtgcattttccattagca 372  Q
    ||||||||||||||| |||||||     |||||| ||||||| | |||||||| | |||||||||||| |||| ||||||| ||||||||  ||||| ||    
T  3718798 tttgctcatttcacacttattaagaaaaatgtattaatgaag-agagagaaaaatagttttaagtgctcttgtcaagtatttgtgcatttatcattatca 3718896  T
Q  373 taaat 377  Q
    |||||    
T  3718897 taaat 3718901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 300 - 378
Target Start/End: Original strand, 11099451 - 11099530
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaatt-gttttaagtgcttttgttaagtattggtgcattttccattagcataaata 378  Q
    ||||||||||||||| || |||||||| | |||||||||| |||||||||||||||||||||| |||| || ||||||||    
T  11099451 aaatgtataaatgaaagagagagaaaaatagttttaagtgtttttgttaagtattggtgcattctccactatcataaata 11099530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 300 - 377
Target Start/End: Complemental strand, 3725320 - 3725242
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttccattagcataaat 377  Q
    ||||||||||| |||||| |||||||| || ||||||||||| |||||||||||||||||||| |||| || |||||||    
T  3725320 aaatgtataaaggaaggagagagaaaaatggttttaagtgctattgttaagtattggtgcattctccactatcataaat 3725242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 300 - 403
Target Start/End: Complemental strand, 7613841 - 7613740
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaatt-gttttaagtgcttttgttaagtattggtgcattttccattagcataaatataataaattgaaatatattg 398  Q
    |||||||||||| ||||| |||||||| | |||||||||||  |||||||||||||||||||| |||| || |||||||    |||| ||||||||||||    
T  7613841 aaatgtataaattaaggaaagagaaaaatagttttaagtgcacttgttaagtattggtgcattctccactatcataaat---gtaaagtgaaatatattg 7613745  T
Q  399 aattg 403  Q
    |||||    
T  7613744 aattg 7613740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 300 - 366
Target Start/End: Complemental strand, 39008266 - 39008199
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttcca 366  Q
    |||||||||||||||||| |||||||| || ||||||||||| ||||||||||||||| |||| ||||    
T  39008266 aaatgtataaatgaaggagagagaaaaatggttttaagtgctcttgttaagtattggttcattctcca 39008199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 274 - 366
Target Start/End: Complemental strand, 15814807 - 15814709
Alignment:
Q  274 agtcatttgctcatttcacatttattaaa-----tgtataaatgaaggatagagaaaa-ttgttttaagtgcttttgttaagtattggtgcattttcca 366  Q
    ||||||||||| ||||||||| |||||||     ||||||||||||||| |||||||| || ||||||| ||| |||||||||||| ||| ||||||||    
T  15814807 agtcatttgcttatttcacatatattaaaaaaaatgtataaatgaaggagagagaaaaattattttaagcgctcttgttaagtatttgtgtattttcca 15814709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 300 - 403
Target Start/End: Complemental strand, 25814498 - 25814397
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaatt-gttttaagtgcttttgttaagtattggtgcattttccattagcataaatataataaattgaaatatattg 398  Q
    ||||| |||||||||||| |||||||| | |||||||||||  ||||||||||||||| |||| |||| || |||||||    |||| ||||||||||||    
T  25814498 aaatgcataaatgaaggagagagaaaaatagttttaagtgcacttgttaagtattggtacattatccactatcataaat---gtaaagtgaaatatattg 25814402  T
Q  399 aattg 403  Q
    |||||    
T  25814401 aattg 25814397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 300 - 377
Target Start/End: Complemental strand, 33988334 - 33988256
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttccattagcataaat 377  Q
    |||||||||||||||||| | |||||| || ||||||||| |||||||||||||||||| ||| |||| || |||||||    
T  33988334 aaatgtataaatgaaggagaaagaaaaatggttttaagtgtttttgttaagtattggtgtattctccactatcataaat 33988256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 300 - 402
Target Start/End: Complemental strand, 6610971 - 6610871
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaattgt-tttaagtgcttttgttaagtattggtgcattttccattagcataaatataataaattgaaatatattg 398  Q
    |||||||| ||||||||| |||||||| ||  |||||||| |||| ||||||||||||||||| |||| || |||||||    |||| ||||||||||||    
T  6610971 aaatgtatcaatgaaggagagagaaaaatgagtttaagtgtttttattaagtattggtgcattctccactatcataaat---gtaaagtgaaatatattg 6610875  T
Q  399 aatt 402  Q
    ||||    
T  6610874 aatt 6610871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 283 - 378
Target Start/End: Complemental strand, 35667039 - 35666940
Alignment:
Q  283 ctcatttcacatttattaa-----atgtataaatgaaggatagagaaaattgttttaagtgcttttgttaagtattggtgcattttccattagcataaat 377  Q
    |||||||||||||||||||     || ||| | ||||||| ||| ||||| ||||||||||||||| |||||||||||||||||| ||||||  ||||||    
T  35667039 ctcatttcacatttattaagaaaaatttattattgaaggagaga-aaaatagttttaagtgcttttcttaagtattggtgcatttaccattattataaat 35666941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 377
Target Start/End: Original strand, 8369694 - 8369748
Alignment:
Q  323 aaaattgttttaagtgcttttgttaagtattggtgcattttccattagcataaat 377  Q
    ||||||||||||| |||| |||||||||||||||||||| |||| || |||||||    
T  8369694 aaaattgttttaaatgctcttgttaagtattggtgcattctccactatcataaat 8369748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 300 - 377
Target Start/End: Original strand, 8692792 - 8692870
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttccattagcataaat 377  Q
    |||| |||||||||||||  ||||||| || ||||||||| | |||||||||||||||||||| |||| || |||||||    
T  8692792 aaatatataaatgaaggagggagaaaaatggttttaagtgttcttgttaagtattggtgcattctccactatcataaat 8692870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 300 - 377
Target Start/End: Original strand, 35646063 - 35646141
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttccattagcataaat 377  Q
    |||| |||||||||| || |||||||| || ||||||||| | |||||||||||||||||||| |||| || |||||||    
T  35646063 aaatatataaatgaatgagagagaaaaatgattttaagtgatcttgttaagtattggtgcattctccactatcataaat 35646141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 300 - 361
Target Start/End: Complemental strand, 41184794 - 41184732
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaatt-gttttaagtgcttttgttaagtattggtgcatt 361  Q
    |||||||||||||||||| | |||||| | |||||||||||  ||||||||||||||||||||    
T  41184794 aaatgtataaatgaaggagaaagaaaaatagttttaagtgcacttgttaagtattggtgcatt 41184732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 248 - 352
Target Start/End: Complemental strand, 42211520 - 42211410
Alignment:
Q  248 atactccctcagtcctaaattcacttagtcatttgctcatttcacatttatt-----aaatgtataaatgaaggatagag-aaaattgttttaagtgctt 341  Q
    |||||||||| |||| ||||| ||  ||||||||||||||||||||  ||||     |||||||||||||||||   ||| ||||| ||||||||||||     
T  42211520 atactccctctgtcccaaattaaccgagtcatttgctcatttcacacatattaaaaaaaatgtataaatgaaggtgggagaaaaatggttttaagtgctc 42211421  T
Q  342 ttgttaagtat 352  Q
    |||||||||||    
T  42211420 ttgttaagtat 42211410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 300 - 377
Target Start/End: Original strand, 42575612 - 42575690
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttccattagcataaat 377  Q
    ||||||||||||||| || |||||||| || ||||||||||| ||| |||||||||||| ||| |||| || |||||||    
T  42575612 aaatgtataaatgaatgagagagaaaaatggttttaagtgctcttggtaagtattggtgtattctccactatcataaat 42575690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 404 - 480
Target Start/End: Complemental strand, 12678345 - 12678268
Alignment:
Q  404 aaaaagtgaaatggataagttattttaaaacaata-attttttacaaaatgatcatttattaaaggacggaatgagta 480  Q
    |||||||||||| ||| ||||||||||  |||||| |||||| ||||||  |||| ||||||||||||||| ||||||    
T  12678345 aaaaagtgaaatagatcagttattttaggacaatatatttttaacaaaacaatcacttattaaaggacggattgagta 12678268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 300 - 404
Target Start/End: Complemental strand, 20190027 - 20189924
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaa--ttgttttaagtgcttttgttaagtattggtgcattttccattagcataaatataataaattgaaatatatt 397  Q
    ||||| |||||||||||| ||| ||||  | ||||||||||| ||||||||||| || |||||| ||||||| |||||||    |||| || ||||||||    
T  20190027 aaatgcataaatgaaggagagataaaaaatagttttaagtgcatttgttaagtactgatgcattctccattatcataaat---gtaaagtggaatatatt 20189931  T
Q  398 gaattga 404  Q
    |||||||    
T  20189930 gaattga 20189924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 377
Target Start/End: Complemental strand, 32539797 - 32539718
Alignment:
Q  299 taaatgtataaatgaaggatagagaaa-attgttttaagtgcttttgttaagtattggtgcattttccattagcataaat 377  Q
    |||||| ||||| |||||| ||| ||| || ||||||||||||||| ||| ||||||||||||| |||| || |||||||    
T  32539797 taaatgaataaacgaaggagagacaaagatggttttaagtgcttttattatgtattggtgcattctccactatcataaat 32539718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 300 - 361
Target Start/End: Original strand, 16283561 - 16283623
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcatt 361  Q
    |||||||||||||||||| ||| |||| || |||||| || |||||||| |||||||||||||    
T  16283561 aaatgtataaatgaaggagagaaaaaaatggttttaaatgattttgttatgtattggtgcatt 16283623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 300 - 377
Target Start/End: Original strand, 36469068 - 36469146
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaattgttt-taagtgcttttgttaagtattggtgcattttccattagcataaat 377  Q
    |||||||||||||||||| | | |||| || || |||||| |||||||| ||||||||||||| |||| || |||||||    
T  36469068 aaatgtataaatgaaggagataaaaaaatgattataagtgtttttgttatgtattggtgcattctccactatcataaat 36469146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 377
Target Start/End: Complemental strand, 858500 - 858391
Alignment:
Q  274 agtcatttgctcatttcacatttatt-----aaatgtataaatgaaggatag-agaaaattgttttaagtgcttttgttaagtattggtgcattttccat 367  Q
    ||||||||||||||||||||  ||||     |||||||||||| ||||| || | ||||| |||||||||  | ||||||| ||||||| |||| |||||    
T  858500 agtcatttgctcatttcacacatattaagaaaaatgtataaataaaggagagaaaaaaatggttttaagttatcttgttaaatattggtacattctccat 858401  T
Q  368 tagcataaat 377  Q
    || |||||||    
T  858400 tatcataaat 858391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 404 - 464
Target Start/End: Complemental strand, 31956700 - 31956640
Alignment:
Q  404 aaaaagtgaaatggataagttattttaaaacaataattttttacaaaatgatcatttatta 464  Q
    |||||||||||| ||| | |||||||| ||||||| ||||| |||||| ||||| ||||||    
T  31956700 aaaaagtgaaatagatcaattattttagaacaatattttttgacaaaaagatcacttatta 31956640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 300 - 366
Target Start/End: Complemental strand, 98959 - 98892
Alignment:
Q  300 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttcca 366  Q
    ||||||||||||||| || |||||||| || ||||||||||| ||| |||||||||||||||| ||||    
T  98959 aaatgtataaatgaatgagagagaaaaatgattttaagtgctcttgataagtattggtgcattatcca 98892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 304 - 377
Target Start/End: Original strand, 9529 - 9603
Alignment:
Q  304 gtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttccattagcataaat 377  Q
    |||||||||||||| |||||||| || ||||||||||| ||||||||||||  || ||| ||||||| |||||||    
T  9529 gtataaatgaaggagagagaaaaatggttttaagtgctcttgttaagtattaatgtattctccattatcataaat 9603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0578 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0578
Description:

Target: scaffold0578; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 486
Target Start/End: Complemental strand, 3992 - 3919
Alignment:
Q  413 aatggataagttattttaaaacaataattttttacaaaatgatcatttattaaaggacggaatgagtagcaaat 486  Q
    |||||||  |||||||||  | |||| |||||||||||||||||| |||||| ||||||||  ||||| |||||    
T  3992 aatggatcggttattttaggataatatttttttacaaaatgatcacttattataggacggagggagtaacaaat 3919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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