View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21375_low_3 (Length: 631)

Name: NF21375_low_3
Description: NF21375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21375_low_3
NF21375_low_3
[»] chr6 (6 HSPs)
chr6 (10-374)||(28611905-28612267)
chr6 (396-615)||(28611688-28611906)
chr6 (234-288)||(21937272-21937326)
chr6 (13-245)||(11931953-11932186)
chr6 (234-295)||(24509276-24509337)
chr6 (228-324)||(24075613-24075709)
[»] chr3 (9 HSPs)
chr3 (10-321)||(52653769-52654082)
chr3 (10-295)||(33709825-33710111)
chr3 (17-293)||(40574153-40574428)
chr3 (195-295)||(16729868-16729969)
chr3 (71-123)||(23686089-23686141)
chr3 (71-123)||(24058326-24058378)
chr3 (38-127)||(31362247-31362336)
chr3 (228-295)||(29827123-29827190)
chr3 (228-295)||(49784187-49784255)
[»] chr1 (15 HSPs)
chr1 (10-295)||(49053789-49054075)
chr1 (10-295)||(49061369-49061656)
chr1 (228-288)||(44524460-44524520)
chr1 (228-288)||(48366493-48366553)
chr1 (228-295)||(21432107-21432174)
chr1 (13-190)||(42263370-42263548)
chr1 (228-288)||(29681293-29681353)
chr1 (228-318)||(35624689-35624779)
chr1 (247-288)||(1187552-1187593)
chr1 (233-293)||(43358448-43358508)
chr1 (234-288)||(10187024-10187078)
chr1 (13-127)||(50059492-50059606)
chr1 (17-128)||(52282015-52282128)
chr1 (13-105)||(17458409-17458501)
chr1 (233-277)||(19310562-19310606)
[»] chr7 (9 HSPs)
chr7 (88-318)||(12239434-12239667)
chr7 (194-318)||(37469057-37469182)
chr7 (228-288)||(5436972-5437032)
chr7 (204-295)||(1840839-1840928)
chr7 (233-318)||(24870637-24870722)
chr7 (154-285)||(24871526-24871656)
chr7 (324-404)||(23121965-23122046)
chr7 (17-128)||(34091475-34091586)
chr7 (233-286)||(23757014-23757067)
[»] chr5 (6 HSPs)
chr5 (88-318)||(9851256-9851487)
chr5 (10-288)||(29006480-29006760)
chr5 (234-295)||(2022654-2022715)
chr5 (173-288)||(36203216-36203332)
chr5 (234-295)||(43378132-43378193)
chr5 (34-286)||(9080496-9080749)
[»] chr8 (4 HSPs)
chr8 (10-266)||(12729386-12729644)
chr8 (155-297)||(28695951-28696094)
chr8 (71-297)||(44729133-44729366)
chr8 (234-288)||(25953607-25953661)
[»] chr2 (6 HSPs)
chr2 (13-277)||(14218739-14219004)
chr2 (247-295)||(42779890-42779938)
chr2 (228-295)||(716057-716123)
chr2 (23-266)||(34680971-34681211)
chr2 (247-295)||(16272137-16272185)
chr2 (248-297)||(8367466-8367515)
[»] chr4 (13 HSPs)
chr4 (89-271)||(48779718-48779902)
chr4 (228-295)||(3415594-3415661)
chr4 (13-277)||(20251408-20251674)
chr4 (228-313)||(3425142-3425227)
chr4 (228-284)||(32429726-32429782)
chr4 (234-288)||(18670543-18670597)
chr4 (10-151)||(24391830-24391970)
chr4 (228-288)||(18736861-18736921)
chr4 (233-295)||(30020297-30020359)
chr4 (161-288)||(24129170-24129298)
chr4 (228-288)||(18716188-18716248)
chr4 (13-212)||(47077960-47078154)
chr4 (247-288)||(47071133-47071174)
[»] scaffold0007 (1 HSPs)
scaffold0007 (16-288)||(217750-218013)


Alignment Details
Target: chr6 (Bit Score: 283; Significance: 1e-158; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 10 - 374
Target Start/End: Complemental strand, 28612267 - 28611905
Alignment:
Q  10 attatactaaatcattcttttttatctctagtgcacgaggggaattgacagaacattgttttgtacactaccaatgaacgatatgcttggtgtgaatgta 109  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  28612267 attatactaaatcattctttcttatctctagtgcacgaggggaattgacagaacattgttttgtatactaccattgaacgatatgcttggtgtgaatgta 28612168  T
Q  110 caagtcacgtcaaggattccattgta-cctgaaggggattcgctgatatacccttttacatattgttgacataactggtgggggaaaatcgaacctaaag 208  Q
    ||||||||||||||||||||||||||  ||||||||||||||| |||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||    
T  28612167 caagtcacgtcaaggattccattgtattctgaaggggattcgccgatataccattttacatactgttgacataactggtggggaaaaatcgaacctaaag 28612068  T
Q  209 gttatgtgttccacacacactttagaatttatgtgcatacttcatcatgttcatcttcatcatcttcttgatcaagttatcgcagcaaataaccaacaca 308  Q
    |||||||||||  ||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||||||    
T  28612067 gttatgtgttc--cacacactttaaaatttatgtgcacacttcatcatgttcatattcatcatcttcttgatcaagttattgcagcaaataa-caacaca 28611971  T
Q  309 tgttctaacacatgctctttaatagatgaatagacgtgacctttggaatgagtagctgactaataa 374  Q
    ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  28611970 tgttctaacacatactctttaatagatgaatagatgtgacctttggaatgagtagctgactaataa 28611905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 396 - 615
Target Start/End: Complemental strand, 28611906 - 28611688
Alignment:
Q  396 aatcttgttcaaaaataggatggatgttttaaaatctcaagttatttctgcatttccaaactattcataaaatataaatgatgacaactggctaagatga 495  Q
    |||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  28611906 aatcttgttcaaaactaagatggatgttttaaaatctcaagttatttctgtatttccaaactattcataaaatataaatgatgacaactagctaagatga 28611807  T
Q  496 gatcacaagcttgtgggctccaacctctatccataattgacacaagataggtgaagctagatatatcattatgcacccccaacaaagcagacaaccaatt 595  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28611806 gatcacaagcttgtgggctccaacctctatccataattgacacaagataggtgaagctagatatatcattatgcacccccaacaaagcagacaaccaatt 28611707  T
Q  596 ccaatatctaagagtatata 615  Q
     |||||||||||||||||||    
T  28611706 -caatatctaagagtatata 28611688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 234 - 288
Target Start/End: Complemental strand, 21937326 - 21937272
Alignment:
Q  234 aatttatgtgcatacttcatcatgttcatcttcatcatcttcttgatcaagttat 288  Q
    |||||||||||| |||||||||| ||||||||||||||||||||| |||||||||    
T  21937326 aatttatgtgcacacttcatcatattcatcttcatcatcttcttggtcaagttat 21937272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 245
Target Start/End: Original strand, 11931953 - 11932186
Alignment:
Q  13 atactaaatcattcttttttatctctagtgcacgaggggaattgacagaacattgttttgtacactaccaatgaacgatatgcttggtgtgaatgtacaa 112  Q
    |||||| |||||||||| || | ||||||||||||| | | |||||||||  || || | || ||||||| ||  |||||  ||||||||||||   |||    
T  11931953 atactatatcattctttcttttatctagtgcacgagagaatttgacagaattttattctataaactaccattgt-cgataaacttggtgtgaataagcaa 11932051  T
Q  113 gtcacgtcaaggattccattgta-cctgaaggggattcgctgatata-cccttttacatattgttgacataactggtgggggaaaatcgaacctaaaggt 210  Q
    ||||| ||||||||| ||| ||| |||||||||| ||||||| |||| ||||||| |||   |||| ||||||| |||||||  |||| |||||||||||    
T  11932052 gtcacatcaaggatttcatcgtatcctgaagggg-ttcgctggtataacccttttgcatccggttggcataactagtgggggcgaatcaaacctaaaggt 11932150  T
Q  211 ta-tgtgttccacacacactttagaatttatgtgca 245  Q
    || ||||| | |||||  ||||  ||||||||||||    
T  11932151 tagtgtgtccaacacatgctttgaaatttatgtgca 11932186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 234 - 295
Target Start/End: Original strand, 24509276 - 24509337
Alignment:
Q  234 aatttatgtgcatacttcatcatgttcatcttcatcatcttcttgatcaagttatcgcagca 295  Q
    ||||||| |||| ||||||||||  |||||||||||||||||||| ||||||| | ||||||    
T  24509276 aatttatttgcaaacttcatcatactcatcttcatcatcttcttggtcaagtttttgcagca 24509337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 228 - 324
Target Start/End: Complemental strand, 24075709 - 24075613
Alignment:
Q  228 ctttagaatttatgtgcatacttcatcatgttcatcttcatcatcttcttgatcaagttatcgcagcaaataaccaacacatgttctaacacatgct 324  Q
    |||| |||||||| |||| ||||  |||| |||||||| ||||||||||| |||||||||| |||||| |   | |||||| ||||||||| |||||    
T  24075709 ctttggaatttatatgcacactttgtcatattcatctttatcatcttcttaatcaagttattgcagcagacccctaacacaggttctaacatatgct 24075613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 127; Significance: 3e-65; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 10 - 321
Target Start/End: Original strand, 52653769 - 52654082
Alignment:
Q  10 attatactaaatcattcttttttatctctagtgcacgaggggaattgacagaacattgttttgtacactaccaatgaacgatatgcttggtgtgaatgta 109  Q
    |||||||||||||||||||  || ||||||||||||||||  |||||||||||| || || |||| ||||||| ||  |||||  |||| |||||||||     
T  52653769 attatactaaatcattcttacttttctctagtgcacgaggaaaattgacagaactttattctgtaaactaccattgt-cgatacacttgatgtgaatgtg 52653867  T
Q  110 caagtcacgtcaaggattccattgta-cctgaaggggattcgctgatataccc-ttttacatattgttgacataactggtgggggaaaatcgaacctaaa 207  Q
    |||||||||||||||||||||||||| |||||||||||||||| | |||| || |||| |||   |||| ||||||||||| |||  ||| |||||||||    
T  52653868 caagtcacgtcaaggattccattgtatcctgaaggggattcgccggtataaccattttgcatccggttggcataactggtgagggcgaattgaacctaaa 52653967  T
Q  208 ggtta-tgtgttccacacacactttagaatttatgtgcatacttcatcatgttcatcttcatcatcttcttgatcaagttatcgcagcaaataaccaaca 306  Q
    ||||| ||||| |||||||| |||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| || |||||   | ||||    
T  52653968 ggttagtgtgtcccacacacgctttggaatttatgtgcacacttcatcatgttcattttcatcatcttcttgatcaagttattgccgcaaaccccaaaca 52654067  T
Q  307 catgttctaacacat 321  Q
    || ||||||||||||    
T  52654068 caggttctaacacat 52654082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 10 - 295
Target Start/End: Original strand, 33709825 - 33710111
Alignment:
Q  10 attatactaaatcattcttttttatctctagtgcacgaggggaattgacagaacattgttttgtacactaccaatgaacgatatgcttggtgtgaatgta 109  Q
    |||||||||||||||||||| || |||||||||||| || | | |||||||||| || || |||| ||||||| ||  ||||| |||||||||||||||     
T  33709825 attatactaaatcattctttcttttctctagtgcaccagagaatttgacagaactttattctgtaaactaccattg-tcgatacgcttggtgtgaatgtg 33709923  T
Q  110 caagtcacgtcaaggattccattgta-cctgaaggggattcgctg--atatacccttttacatattgttgacataactggtgggggaaaatcgaacctaa 206  Q
    ||||||||||||||||||| || ||| ||| ||||||||| || |  |||||||||||| |||   ||||||||||||||||| ||  |||||| |||||    
T  33709924 caagtcacgtcaaggattctatcgtatcctaaaggggattagccggtatatacccttttgcatccggttgacataactggtggaggtgaatcgatcctaa 33710023  T
Q  207 aggtta-tgtgttccacacacactttagaatttatgtgcatacttcatcatgttcatcttcatcatcttcttgatcaagttatcgcagca 295  Q
    |||||| ||||| |||||||| |||| ||||||| ||||| |||||||||||||| || | ||||| |||||| ||||| ||| ||||||    
T  33710024 aggttagtgtgtcccacacacgctttggaattta-gtgcacacttcatcatgttcttcat-atcattttcttggtcaagatattgcagca 33710111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 17 - 293
Target Start/End: Complemental strand, 40574428 - 40574153
Alignment:
Q  17 taaatcattcttttttatctctagtgcacgaggggaattgacagaacattgttttgtacactaccaatgaacgatatgcttggtgtgaatgtacaagtca 116  Q
    ||||||||||||| || ||||||||||||||| | |||||||||||| || || |||| |||| || |||  |||| |||| |||||||||| |||||||    
T  40574428 taaatcattctttcttttctctagtgcacgagagaaattgacagaactttattctgtaaactatcattgattgatacgcttcgtgtgaatgtgcaagtca 40574329  T
Q  117 cgtcaaggattccattgta-cctgaaggggattcgctgatatacccttttacatattgttgacataactggtgggggaaaatcgaacctaaaggtta-tg 214  Q
    |||||| |||||||| ||| ||||||||  |||||||||||| || |||| |||    || |||| |||||||||||  |||| | | ||||||||| ||    
T  40574328 cgtcaaagattccatagtatcctgaaggtaattcgctgatatgccattttgcatccaattaacattactggtgggggtgaatcaagcttaaaggttagtg 40574229  T
Q  215 tgttccacacacactttagaatttatgtgcatacttcatcatgttcatcttcatcatcttcttgatcaagttatcgcag 293  Q
    ||| ||||| |||||| ||||||||||||||    || |||||||||| ||||||||||| || ||| |||||| ||||    
T  40574228 tgtcccacatacacttcagaatttatgtgca---ctcttcatgttcattttcatcatcttttttatcgagttattgcag 40574153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 195 - 295
Target Start/End: Original strand, 16729868 - 16729969
Alignment:
Q  195 aatcgaacctaaaggtt-atgtgttccacacacactttagaatttatgtgcatacttcatcatgttcatcttcatcatcttcttgatcaagttatcgcag 293  Q
    ||||||||||| ||||| ||| ||  ||||||| ||||  |||| ||||||| |||| |||||||||||||||||| |||| ||||||||||||| ||||    
T  16729868 aatcgaacctagaggttgatgagtctcacacacgctttgaaattaatgtgcacactttatcatgttcatcttcatcttcttattgatcaagttattgcag 16729967  T
Q  294 ca 295  Q
    ||    
T  16729968 ca 16729969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 71 - 123
Target Start/End: Original strand, 23686089 - 23686141
Alignment:
Q  71 tgtacactaccaatgaacgatatgcttggtgtgaatgtacaagtcacgtcaag 123  Q
    |||| ||||||||||| ||||||||||||||||||||| ||| ||||||||||    
T  23686089 tgtaaactaccaatgatcgatatgcttggtgtgaatgtccaaatcacgtcaag 23686141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 71 - 123
Target Start/End: Original strand, 24058326 - 24058378
Alignment:
Q  71 tgtacactaccaatgaacgatatgcttggtgtgaatgtacaagtcacgtcaag 123  Q
    |||| ||||||||||| ||||||||||||||||||||| ||| ||||||||||    
T  24058326 tgtaaactaccaatgatcgatatgcttggtgtgaatgtccaaatcacgtcaag 24058378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 38 - 127
Target Start/End: Complemental strand, 31362336 - 31362247
Alignment:
Q  38 tagtgcacgaggggaattgacagaacattgttttgtacactaccaatgaacgatatgcttggtgtgaatgtacaagtcacgtcaaggatt 127  Q
    ||||||||||||  |||||||||||| || ||||||| ||||| |  || ||||| | |||||||||||||| ||||  |||||||||||    
T  31362336 tagtgcacgaggaaaattgacagaactttattttgtaaactactatcgatcgatacgtttggtgtgaatgtataagttccgtcaaggatt 31362247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 228 - 295
Target Start/End: Complemental strand, 29827190 - 29827123
Alignment:
Q  228 ctttagaatttatgtgcatacttcatcatgttcatcttcatcatcttcttgatcaagttatcgcagca 295  Q
    |||| |||||||||| || ||||||||||  ||||||||||||| |||||| || |||||| ||||||    
T  29827190 ctttggaatttatgttcaaacttcatcatagtcatcttcatcattttcttggtcgagttattgcagca 29827123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 228 - 295
Target Start/End: Complemental strand, 49784255 - 49784187
Alignment:
Q  228 ctttagaatttatgtgcatactt-catcatgttcatcttcatcatcttcttgatcaagttatcgcagca 295  Q
    |||| ||||||||||||| |||| |||||  ||||| ||||||||||||||  ||||||||| ||||||    
T  49784255 ctttggaatttatgtgcacactttcatcacattcatgttcatcatcttcttcgtcaagttattgcagca 49784187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 117; Significance: 3e-59; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 10 - 295
Target Start/End: Original strand, 49053789 - 49054075
Alignment:
Q  10 attatactaaatcattcttttttatctctagtgcacgaggggaattgacagaacattgttttgtacactaccaatgaacgatatgcttggtgtgaatgta 109  Q
    |||||||||||||||||||| |  ||||||||||||||||| ||||| |||||| || ||||||| ||||||| ||  |||||||||||||||||||||     
T  49053789 attatactaaatcattctttctcttctctagtgcacgagggaaattggcagaactttattttgtaaactaccattg-tcgatatgcttggtgtgaatgtg 49053887  T
Q  110 caagtcacgtcaaggattccattgta-cctgaaggggattcgctgatat-acccttttacatattgttgacataactggtgggggaaaatcgaacctaaa 207  Q
    |||||||||||||||||| ||||||| |||||||||||||||| | ||| |||||||| |||   ||||  ||||||||||||||  |||||||||||||    
T  49053888 caagtcacgtcaaggatttcattgtatcctgaaggggattcgccggtataacccttttgcatccagttggtataactggtgggggcgaatcgaacctaaa 49053987  T
Q  208 ggtta-tgtgttccacacacactttagaatttatgtgcatacttcatcatgttcatcttcatcatcttcttgatcaagttatcgcagca 295  Q
    ||||| ||| | |||||||| | || ||||||||||| | |||||||||||||||||||| ||||||| ||| | || |||||||||||    
T  49053988 ggttagtgtttcccacacacgcattggaatttatgtgtacacttcatcatgttcatcttcttcatctttttggt-aaattatcgcagca 49054075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 10 - 295
Target Start/End: Original strand, 49061369 - 49061656
Alignment:
Q  10 attatactaaatcattcttttttatctctagtgcacgaggggaattgacagaacattgttttgtacactaccaatgaacgatatgcttggtgtgaatgta 109  Q
    |||||||||||||||||||| || ||||||||||||||||| |||||||| ||| || || |||| ||||||| ||  ||||||| |||||||||||||     
T  49061369 attatactaaatcattctttcttttctctagtgcacgagggaaattgacaaaactttattctgtaaactaccattgt-cgatatgtttggtgtgaatgtg 49061467  T
Q  110 caagtcacgtcaaggattccattgtac-ctgaaggggattcgctgatata-cccttttacatattgttgacataactggtgggggaaaatcgaacctaaa 207  Q
    ||| ||||||||||||||||||||||  ||||||||||||||  | |||| ||||||| ||| | |||| |||||||||||||||  |||||||||||||    
T  49061468 caaatcacgtcaaggattccattgtattctgaaggggattcgtcggtataacccttttgcatctagttggcataactggtgggggcgaatcgaacctaaa 49061567  T
Q  208 ggtta-tgtgttccacacacactttagaatttatgtgcatacttcatcatgttcatcttcatcatcttcttgatcaagttatcgcagca 295  Q
    |  || ||| | |||||||| |||||||||||||||||| |||||||||||||||||||| ||||||| ||| | || |||| ||||||    
T  49061568 gactagtgtttcccacacacgctttagaatttatgtgcacacttcatcatgttcatcttcttcatctttttggtaaaattattgcagca 49061656  T

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Target: chr1; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 228 - 288
Target Start/End: Original strand, 44524460 - 44524520
Alignment:
Q  228 ctttagaatttatgtgcatacttcatcatgttcatcttcatcatcttcttgatcaagttat 288  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44524460 ctttggaatttatgtgcatacttcatcatgttcatcttcatcatcttcttgatcaagttat 44524520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 228 - 288
Target Start/End: Original strand, 48366493 - 48366553
Alignment:
Q  228 ctttagaatttatgtgcatacttcatcatgttcatcttcatcatcttcttgatcaagttat 288  Q
    |||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||    
T  48366493 ctttcgaatttatttgcacacttcatcatgttcatcttcatcatcttcttgatcaagttat 48366553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 228 - 295
Target Start/End: Original strand, 21432107 - 21432174
Alignment:
Q  228 ctttagaatttatgtgcatacttcatcatgttcatcttcatcatcttcttgatcaagttatcgcagca 295  Q
    |||| ||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||| ||||||    
T  21432107 ctttggaatttatgtgcacacttcagcatgttcatcttcatcatcttcttggtcaagttattgcagca 21432174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 13 - 190
Target Start/End: Complemental strand, 42263548 - 42263370
Alignment:
Q  13 atactaaatcattcttttttatctctagtgcacgaggggaattgacagaacattgttttgtacactaccaatgaacgatatgcttggtgtgaatgtacaa 112  Q
    |||||| |||||||||| || ||||||||||||||| | ||| |||| ||| |||||||||| | || || ||  ||||| |||| || ||||||| |||    
T  42263548 atactatatcattctttcttttctctagtgcacgagagaaatcgacaaaactttgttttgtaaattaacattgttcgatacgcttagtatgaatgtgcaa 42263449  T
Q  113 gtcacgtcaaggattccattgta-cctgaaggggattcgctgatatacccttttacatattgttgacataactggtggg 190  Q
    |||| ||||| ||||  |  ||| |||||||||||||| | | |||||| |||| ||| |||||||||||| |||||||    
T  42263448 gtcatgtcaaagattttaaagtatcctgaaggggattcaccgttataccattttgcattttgttgacataattggtggg 42263370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 228 - 288
Target Start/End: Complemental strand, 29681353 - 29681293
Alignment:
Q  228 ctttagaatttatgtgcatacttcatcatgttcatcttcatcatcttcttgatcaagttat 288  Q
    |||| |||||||| |||| |||||||||||||||||||||||||||||||| |||||||||    
T  29681353 ctttggaatttatttgcacacttcatcatgttcatcttcatcatcttcttggtcaagttat 29681293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 228 - 318
Target Start/End: Complemental strand, 35624779 - 35624689
Alignment:
Q  228 ctttagaatttatgtgcatacttcatcatgttcatcttcatcatcttcttgatcaagttatcgcagcaaataaccaacacatgttctaaca 318  Q
    |||| ||||||||||||| ||||| | || ||||||||||||||||||||| ||||||||| |||||| |   |||||||| |||||||||    
T  35624779 ctttggaatttatgtgcacacttcgtaatattcatcttcatcatcttcttggtcaagttattgcagcagacccccaacacaagttctaaca 35624689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 247 - 288
Target Start/End: Complemental strand, 1187593 - 1187552
Alignment:
Q  247 acttcatcatgttcatcttcatcatcttcttgatcaagttat 288  Q
    |||||||||| |||| ||||||||||||||||||||||||||    
T  1187593 acttcatcatattcaccttcatcatcttcttgatcaagttat 1187552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 233 - 293
Target Start/End: Complemental strand, 43358508 - 43358448
Alignment:
Q  233 gaatttatgtgcatacttcatcatgttcatcttcatcatcttcttgatcaagttatcgcag 293  Q
    ||||| |||||||  |||||||||  ||||||||||||||||||||||||| |||| ||||    
T  43358508 gaattcatgtgcacgcttcatcatagtcatcttcatcatcttcttgatcaatttattgcag 43358448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 234 - 288
Target Start/End: Original strand, 10187024 - 10187078
Alignment:
Q  234 aatttatgtgcatacttcatcatgttcatcttcatcatcttcttgatcaagttat 288  Q
    ||||||||||||  |||||||||  |||| || ||||||||||||||||||||||    
T  10187024 aatttatgtgcacgcttcatcatagtcatatttatcatcttcttgatcaagttat 10187078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 13 - 127
Target Start/End: Original strand, 50059492 - 50059606
Alignment:
Q  13 atactaaatcattcttttttatctctagtgcacgaggggaattgacagaacattgttttgtacactaccaatgaacgatatgcttggtgtgaatgtacaa 112  Q
    ||||| ||||||||||| || ||||||||||||||| | |||| ||||||| || || | || |||| || ||| ||||| | | | ||||||| || ||    
T  50059492 atactgaatcattctttattttctctagtgcacgagagaaatttacagaactttattctataaactatcattgatcgatacgttggatgtgaatttataa 50059591  T
Q  113 gtcacgtcaaggatt 127  Q
    |||||||| ||||||    
T  50059592 gtcacgtccaggatt 50059606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 17 - 128
Target Start/End: Complemental strand, 52282128 - 52282015
Alignment:
Q  17 taaatcattcttttttatctctagtgcacgagggg--aattgacagaacattgttttgtacactaccaatgaacgatatgcttggtgtgaatgtacaagt 114  Q
    ||||||||||||| || ||||||||||| ||| |   |||||||| ||| || || |||| ||||||| ||| ||||  ||||||||||||| | |||||    
T  52282128 taaatcattctttcttttctctagtgcatgagagagaaattgacataactttattctgtaaactaccattgatcgatgcgcttggtgtgaatatgcaagt 52282029  T
Q  115 cacgtcaaggattc 128  Q
    || ||||| |||||    
T  52282028 catgtcaaagattc 52282015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 13 - 105
Target Start/End: Original strand, 17458409 - 17458501
Alignment:
Q  13 atactaaatcattcttttttatctctagtgcacgaggggaattgacagaacattgttttgtacactaccaatgaacgatatgcttggtgtgaa 105  Q
    |||||||||||||||||  | |||||||||||||||  |||| || | ||| || ||||||| |||| || ||| ||||| ||||||| ||||    
T  17458409 atactaaatcattctttcatttctctagtgcacgagatgaatagagataactttattttgtaaactatcattgatcgatacgcttggtttgaa 17458501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 233 - 277
Target Start/End: Complemental strand, 19310606 - 19310562
Alignment:
Q  233 gaatttatgtgcatacttcatcatgttcatcttcatcatcttctt 277  Q
    ||||||||||||| |||||||||| | |||||| |||||||||||    
T  19310606 gaatttatgtgcacacttcatcatatacatctttatcatcttctt 19310562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 110; Significance: 4e-55; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 88 - 318
Target Start/End: Complemental strand, 12239667 - 12239434
Alignment:
Q  88 cgatatgcttggtgtgaatgtacaagtcacgtcaaggattccattgta-cctgaaggggattcgctgatatacccttttacatattgtt-gacataactg 185  Q
    ||||| ||||||||||||||| |||||||||||||||||| ||| ||| |||||||||||||||| || |||||||||| |||   ||| ||||||||||    
T  12239667 cgatacgcttggtgtgaatgtgcaagtcacgtcaaggatttcatcgtatcctgaaggggattcgccgacatacccttttgcatccggtttgacataactg 12239568  T
Q  186 gtgggggaaaatcgaacctaaaggtta-tgtgttccacacacactttagaatttatgtgcatacttcatcatgttcatcttcatcatcttcttgatcaag 284  Q
    |||||||  |||||||||||||||||| ||||| |||||||| ||||  |||||||||||| |||||||||| |||||| ||||||||||||| ||||||    
T  12239567 gtgggggcgaatcgaacctaaaggttaatgtgtcccacacacgctttgaaatttatgtgcacacttcatcatattcatcatcatcatcttcttaatcaag 12239468  T
Q  285 ttatcgcagcaaataaccaacacatgttctaaca 318  Q
    |||| ||||||||   |||||||| |||||||||    
T  12239467 ttattgcagcaaacctccaacacaagttctaaca 12239434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 194 - 318
Target Start/End: Original strand, 37469057 - 37469182
Alignment:
Q  194 aaatcgaacctaaaggtta-tgtgttccacacacactttagaatttatgtgcatacttcatcatgttcatcttcatcatcttcttgatcaagttatcgca 292  Q
    ||||| ||||||||||||| ||||| |||||||||||||  |||||||||||| | || ||||||||||||||||||||||||||||||||||||| ||     
T  37469057 aaatcaaacctaaaggttagtgtgtcccacacacactttgaaatttatgtgcacatttaatcatgttcatcttcatcatcttcttgatcaagttattgct 37469156  T
Q  293 gcaaataaccaacacatgttctaaca 318  Q
    |||||   |||||||| |||||||||    
T  37469157 gcaaacccccaacacaggttctaaca 37469182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 228 - 288
Target Start/End: Original strand, 5436972 - 5437032
Alignment:
Q  228 ctttagaatttatgtgcatacttcatcatgttcatcttcatcatcttcttgatcaagttat 288  Q
    |||| |||||||| |||| |||||||||||||||||||||||||||||||| |||||||||    
T  5436972 ctttggaatttatttgcacacttcatcatgttcatcttcatcatcttcttggtcaagttat 5437032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 204 - 295
Target Start/End: Original strand, 1840839 - 1840928
Alignment:
Q  204 taaaggtta-tgtgttccacacacactttagaatttatgtgcatacttcatcatgttcatcttcatcatcttcttgatcaagttatcgcagca 295  Q
    ||||||||| ||| |||||||||||||||||| ||||||| ||   |||||||||||||   ||||||||| |||||||||||||| ||||||    
T  1840839 taaaggttagtgtattccacacacactttagattttatgtccacttttcatcatgttca---tcatcatctacttgatcaagttattgcagca 1840928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 233 - 318
Target Start/End: Original strand, 24870637 - 24870722
Alignment:
Q  233 gaatttatgtgcatacttcatcatgttcatcttcatcatcttcttgatcaagttatcgcagcaaataaccaacacatgttctaaca 318  Q
    ||||||||||| ||  ||||||||||  ||||||||||||||||| |||||||||| ||||||||   |||||| | |||||||||    
T  24870637 gaatttatgtgtattattcatcatgtctatcttcatcatcttcttcatcaagttattgcagcaaacccccaacataggttctaaca 24870722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 154 - 285
Target Start/End: Original strand, 24871526 - 24871656
Alignment:
Q  154 atatacccttttacatattgttgacataactggtgggggaaaatcgaacctaaaggtta-tgtgttccacacacactttagaatttatgtgcatacttca 252  Q
    |||||||||||||||| |  ||| ||||||||| ||||   |||| ||| ||||||||| ||||||  |||||||||||| ||||||| ||||  ||| |    
T  24871526 atatacccttttacatgtgattggcataactggcggggacgaatcaaacgtaaaggttaatgtgtt--acacacactttaaaatttatatgcactcttta 24871623  T
Q  253 tcatgttcatcttcatcatcttcttgatcaagt 285  Q
    || | || ||||||||||||||||| |||||||    
T  24871624 tcgtatttatcttcatcatcttcttaatcaagt 24871656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 324 - 404
Target Start/End: Complemental strand, 23122046 - 23121965
Alignment:
Q  324 tctttaatagatgaatagacgtgacctttggaatgagtagctgactaataaactaaa-tttttatgtgagccaaatcttgtt 404  Q
    |||||||||||||| || |  ||||||||||||| ||||||| | |||| ||||||| |||| |||||| ||||||||||||    
T  23122046 tctttaatagatgagtacatttgacctttggaattagtagctaaataattaactaaacttttgatgtgaaccaaatcttgtt 23121965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 128
Target Start/End: Complemental strand, 34091586 - 34091475
Alignment:
Q  17 taaatcattcttttttatctctagtgcacgaggggaattgacagaacattgttttgtacactaccaatgaacgatatgcttggtgtgaatgtacaagtca 116  Q
    |||||||||| || || |||||| |||| ||| | |||||| ||||| ||  |||||| ||||||| | |   ||| | ||||||||||||| |||||||    
T  34091586 taaatcattcattcttttctctaatgcatgagagaaattgagagaactttactttgtaaactaccattaattcatacgattggtgtgaatgtgcaagtca 34091487  T
Q  117 cgtcaaggattc 128  Q
    ||||||||||||    
T  34091486 cgtcaaggattc 34091475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 286
Target Start/End: Complemental strand, 23757067 - 23757014
Alignment:
Q  233 gaatttatgtgcatacttcatcatgttcatcttcatcatcttcttgatcaagtt 286  Q
    |||||||||| ||  |||||||||||||||||||||||| |||||  |||||||    
T  23757067 gaatttatgttcactcttcatcatgttcatcttcatcattttcttagtcaagtt 23757014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 8e-38; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 88 - 318
Target Start/End: Complemental strand, 9851487 - 9851256
Alignment:
Q  88 cgatatgcttggtgtgaatgtacaagtcacgtcaaggattccattgtacct-gaaggggattcgctgatatacccttttacatattgttgacataactgg 186  Q
    ||||| ||||||||||||||| ||| |||| | ||| ||||||| ||| || ||||||||||||| | ||||||||||| |||   |||| | |||||||    
T  9851487 cgatacgcttggtgtgaatgtgcaaatcacattaagtattccatcgtatcttgaaggggattcgccggtatacccttttgcattcggttggcttaactgg 9851388  T
Q  187 tgggggaaaatcgaacctaaaggtta-tgtgttccacacacactttagaatttatgtgcatacttcatcatgttcatcttcatcatcttcttgatcaagt 285  Q
    | ||| | ||| ||||||||| |||| ||||| |||||||| |||| ||||||||||||| | |||||||||||||||||||||||||| ||||||||||    
T  9851387 taggg-agaattgaacctaaatgttagtgtgtcccacacacgctttggaatttatgtgcacaattcatcatgttcatcttcatcatctttttgatcaagt 9851289  T
Q  286 tatcgcagcaaataaccaacacatgttctaaca 318  Q
    ||| |||||| |   || |||||||||||||||    
T  9851288 tattgcagcagacctcctacacatgttctaaca 9851256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 10 - 288
Target Start/End: Original strand, 29006480 - 29006760
Alignment:
Q  10 attatactaaatcattcttttttatctctagtgcacgaggggaattgacagaacattgttttgtaca-ctaccaatgaacgatatgcttggtgtgaatgt 108  Q
    ||||||||||||||||| || || | |||||||||||||   | |||||||||| || || |||| | ||| || ||| ||||| |||||||||||||||    
T  29006480 attatactaaatcattcattcttttttctagtgcacgagataagttgacagaactttattctgtaaaactaacattga-cgatacgcttggtgtgaatgt 29006578  T
Q  109 acaagtcacgtcaaggattccattgta-cctgaaggggattcgctgatat-acccttttacatattgttgacataactggtgggggaaaatcgaacctaa 206  Q
      | |||| ||||||||||||||||||  |||||| ||||||||  |||| |||||||| ||| | ||||| | |||| || ||||  ||||||||||||    
T  29006579 gtatgtcatgtcaaggattccattgtattctgaagaggattcgccaatataacccttttgcatctggttgataaaactagt-ggggcgaatcgaacctaa 29006677  T
Q  207 aggtta-tgtgttccacacacactttagaatttatgtgcatacttcatcatgttcatcttcatcatcttcttgatcaagttat 288  Q
    | |||| |||||  ||||||| ||||  ||||||||||||  ||||||||| |||||||| |||||||| || ||||| ||||    
T  29006678 aagttagtgtgtctcacacacgctttgaaatttatgtgcactcttcatcatattcatcttgatcatcttttttatcaaattat 29006760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 234 - 295
Target Start/End: Complemental strand, 2022715 - 2022654
Alignment:
Q  234 aatttatgtgcatacttcatcatgttcatcttcatcatcttcttgatcaagttatcgcagca 295  Q
    |||||||||||| | |||||||||||||||||||||||||||||||||||||||| ||||||    
T  2022715 aatttatgtgcacatttcatcatgttcatcttcatcatcttcttgatcaagttattgcagca 2022654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 173 - 288
Target Start/End: Original strand, 36203216 - 36203332
Alignment:
Q  173 gttgacataactggtgggggaaaatcgaacctaaaggtta-tgtgttccacacacactttagaatttatgtgcatacttcatcatgttcatcttcatcat 271  Q
    |||| ||||||||||||||   |||||||| ||||||||| ||||  |||||||| |  |  |||||||||||| | ||||| |||||||||||||||||    
T  36203216 gttggcataactggtggggacgaatcgaacttaaaggttagtgtggcccacacacgccatgaaatttatgtgcacaattcattatgttcatcttcatcat 36203315  T
Q  272 cttcttgatcaagttat 288  Q
    ||||||||| |||||||    
T  36203316 cttcttgatgaagttat 36203332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 234 - 295
Target Start/End: Complemental strand, 43378193 - 43378132
Alignment:
Q  234 aatttatgtgcatacttcatcatgttcatcttcatcatcttcttgatcaagttatcgcagca 295  Q
    |||||||||||| |||||||||| |||||||||||||||||| || ||||||||| ||||||    
T  43378193 aatttatgtgcacacttcatcatattcatcttcatcatcttcatggtcaagttattgcagca 43378132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 34 - 286
Target Start/End: Complemental strand, 9080749 - 9080496
Alignment:
Q  34 tctctagtgcacgaggggaattgacagaacattgttttgtacactaccaatgaacgatatgcttggtgtgaatgtacaagtcacgtcaaggattccattg 133  Q
    |||||||| |||||| | |||||| ||||| || ||||||| ||||||| ||| | ||| | ||  ||||||||| ||||| |||||||| ||||||  |    
T  9080749 tctctagtacacgagagcaattgagagaactttattttgtaaactaccattgatctatacgtttaatgtgaatgtgcaagttacgtcaagaattccaaag 9080650  T
Q  134 tacc-tgaaggggattcgctgatatacccttttacatattgttgacataact-ggtgggggaaaatcgaacctaaaggtta-tgtgttccacacacactt 230  Q
    || | |||||||| ||||  | ||||| | ||| ||| |  |||||| || | ||||||||  |||||||| ||||| ||| ||||||| |||||| |||    
T  9080649 tatcatgaagggg-ttcgtcggtatactcatttgcatctacttgacaaaaattggtgggggcgaatcgaacttaaagcttagtgtgttc-acacactctt 9080552  T
Q  231 tagaatttatgtgcatacttcatcatgttcatcttcatcatcttcttgatcaagtt 286  Q
    || |||||||||||    || ||||||||||| |||||| |||||||| |||||||    
T  9080551 taaaatttatgtgccctttttatcatgttcattttcatcttcttcttgttcaagtt 9080496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 3e-37; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 10 - 266
Target Start/End: Original strand, 12729386 - 12729644
Alignment:
Q  10 attatactaaatcattcttttttatctctagtgcacgaggggaattgacagaacattgttttgtacactaccaatgaacgatatgcttggtgtgaatgta 109  Q
    |||||||||||| ||||||| || ||||||||||||||| | |||||||||||| || ||  ||| ||||| | ||  |||||||||||||||||||||     
T  12729386 attatactaaataattctttcttttctctagtgcacgagagaaattgacagaactttattcagtaaactacaattgt-cgatatgcttggtgtgaatgtg 12729484  T
Q  110 caagtcacgtcaaggattccattgta-cctgaaggggattcgctgatat-acccttttacatattgttgacataactggtgggggaaaatcgaacctaaa 207  Q
    ||||||| |||||||||| ||| ||| ||||||||||| |||| | ||| |||||||| |||   |||| |||||||||||| ||  ||||| |||||||    
T  12729485 caagtcatgtcaaggatttcatcgtatcctgaaggggaatcgccggtataacccttttgcatccggttggcataactggtggaggcgaatcgtacctaaa 12729584  T
Q  208 ggtta-tgtgttccacacacactttagaatttatgtgcatacttcatcatgttcatcttc 266  Q
    ||||| ||||| |||||||| |||| ||||| ||||| |   ||||||||||||||||||    
T  12729585 ggttagtgtgtcccacacactctttggaattcatgtgtacttttcatcatgttcatcttc 12729644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 155 - 297
Target Start/End: Complemental strand, 28696094 - 28695951
Alignment:
Q  155 tatacccttttacatattgttgacataactggtgggggaaaatcgaacctaaaggtta-tgtgttccacacacactttagaatttatgtgcatacttcat 253  Q
    ||||||||||| ||| | |||||||||||||||| |||  |||| |||||||| |||| ||||| |||||||| |||| ||||||||| |||| ||||||    
T  28696094 tatacccttttgcatctggttgacataactggtgagggcgaatcaaacctaaaagttagtgtgtcccacacacgctttggaatttatgcgcattcttcat 28695995  T
Q  254 catgttcatcttcatcatcttcttgatcaagttatcgcagcaaa 297  Q
    ||||||||| ||||||||||||||| ||||||||| ||| ||||    
T  28695994 catgttcatattcatcatcttcttggtcaagttattgcaacaaa 28695951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 71 - 297
Target Start/End: Original strand, 44729133 - 44729366
Alignment:
Q  71 tgtacactaccaatgaacgatatgcttggtgtgaatgtacaagtcacgtcaaggattccattgta-cctgaaggggattcgctgata-tacccttttaca 168  Q
    |||| |||| || ||| ||||| ||||||| ||||||| ||||||||||||||||||||| |||| ||| |||||||||||| | || |||||| || ||    
T  44729133 tgtaaactatcattgatcgatacgcttggtatgaatgtgcaagtcacgtcaaggattccaatgtatcctaaaggggattcgccggtattaccctcttgca 44729232  T
Q  169 tattgttgacataactggtgggggaaaatcgaacctaaaggtta-tgtgttccacacacactttagaatttatgtgcatacttca----tcatgttcatc 263  Q
    |   |||| ||||||| |  ||||  ||| |||| ||||||||| ||| | |||||||| |||| |||||||||||||  |||||    ||||||||||     
T  44729233 tccggttggcataactcgcaggggtgaattgaacataaaggttagtgtatcccacacacgctttggaatttatgtgcactcttcatcattcatgttcatt 44729332  T
Q  264 ttcatcatcttcttgatcaagttatcgcagcaaa 297  Q
    ||||| ||||||||||||||||||| | ||||||    
T  44729333 ttcattatcttcttgatcaagttattgtagcaaa 44729366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 234 - 288
Target Start/End: Original strand, 25953607 - 25953661
Alignment:
Q  234 aatttatgtgcatacttcatcatgttcatcttcatcatcttcttgatcaagttat 288  Q
    |||||||||||| |||||||||| ||||||||||| ||||||||| | |||||||    
T  25953607 aatttatgtgcacacttcatcatattcatcttcattatcttcttggttaagttat 25953661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 2e-29; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 13 - 277
Target Start/End: Complemental strand, 14219004 - 14218739
Alignment:
Q  13 atactaaatcattcttttttatctctagtgcacgaggggaattgacagaacattgttttgtacactaccaatgaacgatatgcttggtgtgaatgtacaa 112  Q
    ||||||||||||||||| || ||||||||||||||||  |||||| ||||| || ||||||| |||| || |||  |||| | ||||||||||||||||     
T  14219004 atactaaatcattctttcttttctctagtgcacgaggaaaattgaaagaactttattttgtaaactatcattgatggatacgtttggtgtgaatgtacat 14218905  T
Q  113 gtcacgtcaaggattccattgtacct-gaaggggattcgctgatatacccttttacatattgttgacataactggtgggggaaaatcgaacctaaaggtt 211  Q
    |||| ||||  ||||| || ||| || ||||| |||||  |||||||| ||||| |||   ||||||||||||||||||   || ||||||||||| |||    
T  14218904 gtcaagtcagtgattctatagtatcttgaaggagattcattgatatactcttttgcatccagttgacataactggtgggacgaa-tcgaacctaaaagtt 14218806  T
Q  212 a-tgtgttccacacacactttagaatttatgtgcatacttcatcatgttcatcttcatcatcttctt 277  Q
    | | |||   |||||||||||  ||||||||||||    |||||||||||| |||||||||||||||    
T  14218805 agtttgtctaacacacacttttaaatttatgtgcacttgtcatcatgttcaccttcatcatcttctt 14218739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 247 - 295
Target Start/End: Complemental strand, 42779938 - 42779890
Alignment:
Q  247 acttcatcatgttcatcttcatcatcttcttgatcaagttatcgcagca 295  Q
    ||||||| |||||||||||||||||||||||| ||||||||| ||||||    
T  42779938 acttcattatgttcatcttcatcatcttcttggtcaagttattgcagca 42779890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 228 - 295
Target Start/End: Complemental strand, 716123 - 716057
Alignment:
Q  228 ctttagaatttatgtgcatacttcatcatgttcatcttcatcatcttcttgatcaagttatcgcagca 295  Q
    |||||||||||||||| |  ||||||||| ||||| ||||||||||||||| ||||||||| ||||||    
T  716123 ctttagaatttatgtgtacgcttcatcatattcat-ttcatcatcttcttggtcaagttattgcagca 716057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 23 - 266
Target Start/End: Complemental strand, 34681211 - 34680971
Alignment:
Q  23 attcttttttatctctagtgcacgaggggaattgacagaacattgttttgtacactaccaatgaacgatatgcttggtgtgaatgtacaagtcacgtcaa 122  Q
    ||||||| || ||||| ||| ||||| | |||||||| ||| || ||  ||| |||| || ||| ||||| ||||| ||||||||| |||||||     |    
T  34681211 attctttcttttctctggtgaacgagagaaattgacaaaactttattacgtaaactatcattgatcgatacgcttgatgtgaatgtgcaagtca-----a 34681117  T
Q  123 ggattccattgta-cctgaaggggattcgctgatatacccttttacatattgttgacataactggtgggggaaaatcgaacctaaaggttatgtgttcca 221  Q
    | ||| ||| ||| ||||||  ||||||||| ||||| |||||| ||  | |||| |||||||| |||| | |||||||||||||| |||| |||| ||     
T  34681116 gaatttcatagtatcctgaaaaggattcgcttatatatccttttgcacctagttggcataactgatgggagcaaatcgaacctaaaagtta-gtgtaccc 34681018  T
Q  222 cacaca--ctttagaatttatgtgcatacttcatcatgttcatcttc 266  Q
    ||||||  ||||  |||| |||||||  |||||||||||||||||||    
T  34681017 cacacatgcttttaaattcatgtgcagtcttcatcatgttcatcttc 34680971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 247 - 295
Target Start/End: Complemental strand, 16272185 - 16272137
Alignment:
Q  247 acttcatcatgttcatcttcatcatcttcttgatcaagttatcgcagca 295  Q
    ||||||||||||||||||| |||||||||||  ||||||||| ||||||    
T  16272185 acttcatcatgttcatctttatcatcttcttagtcaagttattgcagca 16272137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 297
Target Start/End: Original strand, 8367466 - 8367515
Alignment:
Q  248 cttcatcatgttcatcttcatcatcttcttgatcaagttatcgcagcaaa 297  Q
    ||||||||||||||||||||||||| | || |||||||||  ||||||||    
T  8367466 cttcatcatgttcatcttcatcatcgttttcatcaagttactgcagcaaa 8367515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 3e-28; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 89 - 271
Target Start/End: Complemental strand, 48779902 - 48779718
Alignment:
Q  89 gatatgcttggtgtgaatgtacaagtcacgtcaaggattccattgta-cctgaaggggattcgctgatatacccttttacatattgttgacataactggt 187  Q
    |||||||||||||||||||| ||||||||||||| |||| ||| ||| |||||||||||||| | ||||||||||||| |||    ||| |||||||||     
T  48779902 gatatgcttggtgtgaatgtgcaagtcacgtcaatgatttcatagtatcctgaaggggattcaccgatatacccttttgcatccaattggcataactggc 48779803  T
Q  188 gggggaaaatcgaacctaaaggtta-tgtgttccacacacactttagaatttatgtgcatacttcatcatgttcatcttcatcat 271  Q
     | ||  |||||||| ||||||||| ||| | |||||||| ||||  ||||||| |||| ||||||||||||||||||| |||||    
T  48779802 agaggcgaatcgaacataaaggttagtgtatcccacacacgctttgaaatttatatgcacacttcatcatgttcatctttatcat 48779718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 228 - 295
Target Start/End: Original strand, 3415594 - 3415661
Alignment:
Q  228 ctttagaatttatgtgcatacttcatcatgttcatcttcatcatcttcttgatcaagttatcgcagca 295  Q
    |||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  3415594 ctttggaatttatgtgcacacttcatcatgttcatcttcatcatcttcttggtcaagttattgcagca 3415661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 13 - 277
Target Start/End: Original strand, 20251408 - 20251674
Alignment:
Q  13 atactaaatcattcttttttatctctagtgcacgaggggaattgacagaacattgttttgtacactaccaatgaacgatatgcttggtgtgaatgtacaa 112  Q
    ||||||||||||| ||| || ||| ||||||||||| | |||||||||||| || || |||| |||| || ||| |||||  |||| |||||||||||||    
T  20251408 atactaaatcattatttcttttctgtagtgcacgagagaaattgacagaactttattatgtaaactatcattgatcgatacacttgatgtgaatgtacaa 20251507  T
Q  113 gtcacgtcaaggattccattgta-cctgaa-ggggattcgctgatatacccttttacatattgttgacataactggtgggggaaaatcgaacctaaaggt 210  Q
    | ||| |||| ||||| ||  || |||||| |||||||| |   ||||||| ||| |||   |||||||| ||| || |||| |||| ||| |||||  |    
T  20251508 ggcacatcaatgattcaatcatatcctgaagggggattcaccagtatacccctttgcatccggttgacattactagtaggggcaaatggaatctaaatat 20251607  T
Q  211 ta-tgtgttccacacacactttagaatttatgtgcatacttcatcatgttcatcttcatcatcttctt 277  Q
    || |||| || |||||| ||||  |||||||||| |  ||||||||||||||||||||||||||||||    
T  20251608 tagtgtg-tctacacacgctttgaaatttatgtgtactcttcatcatgttcatcttcatcatcttctt 20251674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 228 - 313
Target Start/End: Original strand, 3425142 - 3425227
Alignment:
Q  228 ctttagaatttatgtgcatacttcatcatgttcatcttcatcatcttcttgatcaagttatcgcagcaaataaccaacacatgttc 313  Q
    |||| ||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||| |||||| ||  |||||||| ||||    
T  3425142 ctttggaatttatgtgcacactttatcatgttcatcttcatcatcttcttggtcaagttattgcagcagatccccaacacaggttc 3425227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 228 - 284
Target Start/End: Original strand, 32429726 - 32429782
Alignment:
Q  228 ctttagaatttatgtgcatacttcatcatgttcatcttcatcatcttcttgatcaag 284  Q
    |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||    
T  32429726 ctttagaatttatgtgcacacttcatcatgttcatcttcatcatcatcttgatcaag 32429782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 234 - 288
Target Start/End: Complemental strand, 18670597 - 18670543
Alignment:
Q  234 aatttatgtgcatacttcatcatgttcatcttcatcatcttcttgatcaagttat 288  Q
    |||||||||||| ||||||||||||||||||| |||||||||||| |||||||||    
T  18670597 aatttatgtgcacacttcatcatgttcatctttatcatcttcttggtcaagttat 18670543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 10 - 151
Target Start/End: Original strand, 24391830 - 24391970
Alignment:
Q  10 attatactaaatcattcttttttatctctagtgcacgaggggaattgacagaacattgttttgtacactaccaatgaacgatatgcttggtgtgaatgta 109  Q
    |||||||||||||||||||| || ||||||||||| ||| | |||||||| ||| || || |||| |||| || ||  ||||| | |||||||| ||||     
T  24391830 attatactaaatcattctttcttttctctagtgcatgagagaaattgacataactttattctgtaaactatcattg-tcgatacgtttggtgtg-atgtg 24391927  T
Q  110 caagtcacgtcaaggattccattgta-cctgaaggggattcgc 151  Q
    ||||||||  |||||||||||||||| | ||||||||||||||    
T  24391928 caagtcacaccaaggattccattgtatcttgaaggggattcgc 24391970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 228 - 288
Target Start/End: Complemental strand, 18736921 - 18736861
Alignment:
Q  228 ctttagaatttatgtgcatacttcatcatgttcatcttcatcatcttcttgatcaagttat 288  Q
    |||| ||||||||||||| ||||||||| ||||||||| ||||||||||||| ||||||||    
T  18736921 ctttggaatttatgtgcacacttcatcaagttcatcttaatcatcttcttgaccaagttat 18736861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 233 - 295
Target Start/End: Original strand, 30020297 - 30020359
Alignment:
Q  233 gaatttatgtgcatacttcatcatgttcatcttcatcatcttcttgatcaagttatcgcagca 295  Q
    |||||||| |||| ||||||||||  |||||||||||||||||||| ||||||||| ||||||    
T  30020297 gaatttatatgcacacttcatcatagtcatcttcatcatcttcttggtcaagttattgcagca 30020359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 161 - 288
Target Start/End: Complemental strand, 24129298 - 24129170
Alignment:
Q  161 cttttacatattgttgacataactggtgggggaaaatcgaacctaaaggtta-tgtgttccacacacactttagaatttatgtgcatacttcatcatgtt 259  Q
    ||||||||| | |||| |||||||||||||||| |||| ||  ||||| ||| ||||| || ||||  |||| |||||||||||||   |||||||| ||    
T  24129298 cttttacatctggttggcataactggtgggggagaatcaaagttaaagattaatgtgtcccgcacatgctttggaatttatgtgcacttttcatcatatt 24129199  T
Q  260 catcttcatcatcttcttgatcaagttat 288  Q
    |||| |||||  |||||||||||| ||||    
T  24129198 catcatcatcgccttcttgatcaaattat 24129170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 228 - 288
Target Start/End: Complemental strand, 18716248 - 18716188
Alignment:
Q  228 ctttagaatttatgtgcatacttcatcatgttcatcttcatcatcttcttgatcaagttat 288  Q
    |||| |||||||||| || ||||||||| ||||||||| ||||||||||||  ||||||||    
T  18716248 ctttggaatttatgtacacacttcatcaagttcatcttaatcatcttcttggccaagttat 18716188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 13 - 212
Target Start/End: Complemental strand, 47078154 - 47077960
Alignment:
Q  13 atactaaatcattcttttttatctctagtgcacgaggggaattgacagaacattgttttgtacactaccaatgaacgatatgcttggtgtgaatgtacaa 112  Q
    ||||||||||||||||| || | | ||||| ||||| | |||||||||||| || || |||| |||| || ||| || |     |||||| |||||  ||    
T  47078154 atactaaatcattctttcttttttgtagtgtacgagagaaattgacagaactttattctgtaaactaacattgatcgtt-----tggtgtaaatgtgtaa 47078060  T
Q  113 gtcacgtcaaggattccattgta-cctgaaggggattcgctgatatacccttttacatattgttgacataactggtgggggaaaatcgaacctaaaggtt 211  Q
    ||||||||||||||||||| ||| ||| ||||||||| | | | |||||||||| |||    ||||||||| |||||||| | ||| ||| |||||||||    
T  47078059 gtcacgtcaaggattccatggtatcctaaaggggatttg-tcaaatacccttttgcatccgattgacataattggtggggaagaatagaatctaaaggtt 47077961  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 288
Target Start/End: Complemental strand, 47071174 - 47071133
Alignment:
Q  247 acttcatcatgttcatcttcatcatcttcttgatcaagttat 288  Q
    ||||| |||||||||||||||||||||||||  |||||||||    
T  47071174 acttcgtcatgttcatcttcatcatcttcttagtcaagttat 47071133  T

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Target: scaffold0007 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 16 - 288
Target Start/End: Original strand, 217750 - 218013
Alignment:
Q  16 ctaaatcattcttttttatctctagtgcacgaggggaattgacagaacattgttttgtacactaccaatgaacgatatgcttggtgtgaatgtacaagtc 115  Q
    |||||| ||||||| || |||||||| |||||| | ||||| ||||||||| ||||||| ||||||| ||| |||||  |||||||||||||| ||||||    
T  217750 ctaaataattctttcttttctctagttcacgagagaaattggcagaacattattttgtaaactaccattgatcgatacacttggtgtgaatgtgcaagtc 217849  T
Q  116 acgtcaaggattccattgtacctgaaggggattcgctgatatacccttttacatattgttgacataactggtgggggaaaatcgaacctaaaggttatgt 215  Q
     | ||||||||| ||| |||         ||||||| | |||||||||||  ||   |||| |||| ||||||||||| |||||| |||||||||  | |    
T  217850 tcttcaaggatttcatcgta-------ttgattcgccggtatacccttttgtatcaggttggcatagctggtgggggagaatcgatcctaaaggtagttt 217942  T
Q  216 gttccacacacactttagaatttatgtgcatacttcatcatgttcatcttcatcatcttcttgatcaagttat 288  Q
    ||  | |||||||||| |||||||||||||   ||||| |||||||||||||||||||| ||  |||||||||    
T  217943 gt--cccacacactttggaatttatgtgcactattcattatgttcatcttcatcatcttttttgtcaagttat 218013  T

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