View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21375_low_5 (Length: 483)
Name: NF21375_low_5
Description: NF21375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21375_low_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 22 - 475
Target Start/End: Original strand, 40057158 - 40057615
Alignment:
| Q |
22 |
tcatatccttcatttgaaattcaatttaaagcatcagttttactttatcaaattcctccttgatgttgcatgcaatcaacatgtcatctattttgagaat |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
40057158 |
tcatatccttcatttgaaattcaatttaaagcatcacttttactttatcaaattcctccttgatgttgcatgcaatcaacatgtcatctattttgaggat |
40057257 |
T |
|
| Q |
122 |
catatagtctacatatttatgtatggtttcatttaggtaacaaaaccatcatcctctcaccttctaaaaccattattcaaaatgcaagtgtcaaaacttt |
221 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40057258 |
catatagtctacatatttatgcatggtttcatttaggtaacaaaaccatcatcctcacaccttctaaaaccattattcaaaatgcaagtgtcaaaacttt |
40057357 |
T |
|
| Q |
222 |
tgtaccatttcctaagggactgcttgaggtcatgagatcttttcaacaagcatattttgtcttcttcatccttcttaataaaaagctctggttgagtcat |
321 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
40057358 |
tgtaccacttcctaagggactgcttgaggtcatgagatcttttcaacaagcatattttgtcttcttcatccttcttagtaaaaagctctggttgagtcat |
40057457 |
T |
|
| Q |
322 |
atgaatttgttcctcaagctgtccatacaagaaaatagttttcacatcaatcaattccctcacgttatgtgaatcctcttgctttgaatctggaatttca |
421 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40057458 |
atgaatttgttcctcaagctgtccatacaagaaaatagttttcacatcaatcaattccctcacgttatgtgaatcctcttgctttgaatctggaatttca |
40057557 |
T |
|
| Q |
422 |
atccatg----taactccctcttttagtttgaataatcatatgcagctcatattcttc |
475 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40057558 |
atccatgtaattaactccctcttttagtttgaataatcatatgcagctcatattcttc |
40057615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University