View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21375_low_6 (Length: 447)
Name: NF21375_low_6
Description: NF21375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21375_low_6 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 132; Significance: 2e-68; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 312 - 447
Target Start/End: Original strand, 23905418 - 23905553
Alignment:
| Q |
312 |
atcataatcgtatttcaagttgagtttcattatcaaatgtcatatagcaatcacaaatacaatcaagcctcttccatatctttggaacatcttttacatg |
411 |
Q |
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| T |
23905418 |
atcataatcgtatttcaagttgagtttcattatcaaatgtcatatagcaatcacaaatacaatcaagcctcttgcatatctttggaacatcttttacatg |
23905517 |
T |
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| Q |
412 |
atatttgaaaagttcagattcacctttgagtgttca |
447 |
Q |
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| T |
23905518 |
atatttgaaaagttcagattcacctttgagtgttca |
23905553 |
T |
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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 163 - 250
Target Start/End: Original strand, 27223007 - 27223097
Alignment:
| Q |
163 |
gttttgacttgcttaccaagacaaagctctataaatggcaccatcattcaaatgaagagaata---tctctcatacccaacatctctcatt |
250 |
Q |
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| T |
27223007 |
gtttttactttcttaccaagacaaacctctataaaaggtatcatcattcaaatgaaaagtatagtctatctcatatccaacctctctcatt |
27223097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 143 - 251
Target Start/End: Complemental strand, 19411659 - 19411547
Alignment:
| Q |
143 |
ggctagttctaaacggctaggttttgacttgcttaccaagacaaagctctataaatggcaccatcattcaaatgaagag----aatatctctcataccca |
238 |
Q |
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| T |
19411659 |
ggctagttctcgatggttagtttttgacttgctcgccaagacaaaactctataaagggtatcattattcatatgtagagtataaatctctctcataccca |
19411560 |
T |
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| Q |
239 |
acatctctcattt |
251 |
Q |
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| T |
19411559 |
agatctctcattt |
19411547 |
T |
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