View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21375_low_7 (Length: 433)
Name: NF21375_low_7
Description: NF21375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21375_low_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 1 - 421
Target Start/End: Complemental strand, 7176814 - 7176394
Alignment:
| Q |
1 |
attatcaagcaaatacatcctatgtttttcaaaacacagacacttattttatagttgctaacaacacttttgaaggactttcaacatgtcaagctttgat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7176814 |
attatcaagcaaatacatcctatgtttttcaaaacacagacacttattttatagttgctaacaacacttttgaaggactttcaacatgtcaagctttgat |
7176715 |
T |
|
| Q |
101 |
gcatgaaaatcataatcctggtgatgtatatcctggtagaaaactactcgttcctcttagatgtgcttgtcccacaaagaatcaaactcagaaaaacata |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
7176714 |
gcatgaaaatcataatcctggtgatgtatatcctggtagaaaactacttgttcctcttagatgtgcttgtcctacaaagaatcaaactcagaaaaacata |
7176615 |
T |
|
| Q |
201 |
aagtatcttttgagttatttggtagattggggtgattctgtttcattcattagtgataaatttggtgttaactttagaaccactcttgaagctaatacac |
300 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7176614 |
aagtatcttttgagttatttggttgattggggtgattctgtttcattcattagtgataaatttggtgttaactttagaaccactcttgaagctaatacac |
7176515 |
T |
|
| Q |
301 |
tttctttaacacaatctacaatttatccctttacaacacttcttgttcctctttttgataagccctcaagttctcaaattcaaacacatcattctccttc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7176514 |
tttctttaacacaatctacaatttatccctttacaacacttcttgttcctctttttgataagccctcaagttctcaaattcaaacacatcattctccttc |
7176415 |
T |
|
| Q |
401 |
atcatccccacctttatcttc |
421 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
7176414 |
atcatccccacctttatcttc |
7176394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University