View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21375_low_8 (Length: 397)
Name: NF21375_low_8
Description: NF21375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21375_low_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 1 - 386
Target Start/End: Original strand, 2446132 - 2446517
Alignment:
| Q |
1 |
ttctgacctgcttgtcaaacattatcttactcacacaatcaatgtgtgttcatgcaggttatgggtgtttgccctgatgagatcacaatggtttcggttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2446132 |
ttctgacctgcttgtcaaacattatcttactcacacaatcaatgtgtgttcatgcaggttatgggtgtttgccctgatgagatcacaatggtttcggttt |
2446231 |
T |
|
| Q |
101 |
tgtctgcatgtgctgatttgggggcacttgagcttggaaaatgggtggaatcatatgttgagaagaaaaatatcccaaaatctgtggaactctgtaacgc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2446232 |
tgtctgcatgtgctgatttgggggcacttgagcttggaaaatgggtggaatcatatgttgagaagaaaaatatcccaaaatctgtggaactctgtaacgc |
2446331 |
T |
|
| Q |
201 |
actgatagacatgtttgcaaagtgtggcaatgttgacaaagctatcaaattgttcagacaaatggactcacgcaccatagtttcatggacttcagtaatt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2446332 |
actgatagacatgtttgcaaagtgtggcaatgttgacaaagctatcaaattgttcagacaaatggactcacgcaccatagtttcatggacttcagtaatt |
2446431 |
T |
|
| Q |
301 |
gctggtctcgcgatgcatggtcgtggtttagacgccgtttctctatttgatgaaatggttgaaaatgggataacacctgatgatgt |
386 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2446432 |
gctggtctcgcgatgcatggtcgtggtttagacgccgtttctctatttgatgaaatggttgaaaatgggataacacctgatgatgt |
2446517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University