View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21376_high_15 (Length: 223)
Name: NF21376_high_15
Description: NF21376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21376_high_15 |
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Alignment Details
Target: chr2 (Bit Score: 174; Significance: 9e-94; HSPs: 12)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 20 - 209
Target Start/End: Original strand, 28221726 - 28221915
Alignment:
| Q |
20 |
tgaatatgactaatgagatctgttggtttcttgataatctgaaggtgcacacaacattggaaaaatcggttgcgatttcattcagcagaggctgtacgac |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||| |
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| T |
28221726 |
tgaatatgactaatgagatctgttggtttcttgataatctgaaggtgcacacaacattggaaaaatctgttgcgatttcattcagcaaaggctctacgac |
28221825 |
T |
|
| Q |
120 |
tttcaaggaacagggcaaccagacccaagtatacctctcgatttcctcagtcagatgaggcaaaactgtcctgacaacaataagaataat |
209 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28221826 |
tttcaaggaacagggcaaccagacccgagtatacctctcgatttcctcagtcagatgaggcaaaactgtcctgacaacaataagaataat |
28221915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 20 - 209
Target Start/End: Complemental strand, 28214558 - 28214369
Alignment:
| Q |
20 |
tgaatatgactaatgagatctgttggtttcttgataatctgaaggtgcacacaacattggaaaaatcggttgcgatttcattcagcagaggctgtacgac |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
28214558 |
tgaatatgactaatgagatctgttggtttcttgataatctaaaggagaacacaacattggaaaaatcggttgcgatttcattcagcaaaggctgtacgac |
28214459 |
T |
|
| Q |
120 |
tttcaaggaacagggcaaccagacccaagtatacctctcgatttcctcagtcagatgaggcaaaactgtcctgacaacaataagaataat |
209 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
28214458 |
tttcaaggaacagggcaaccagacccgagtatacctctcgatttccttagtcagatgaggcaaaactgtcctgacaacaataagaataat |
28214369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 20 - 205
Target Start/End: Original strand, 32310278 - 32310463
Alignment:
| Q |
20 |
tgaatatgactaatgagatctgttggtttcttgataatctgaaggtgcacacaacattggaaaaatcggttgcgatttcattcagcagaggctgtacgac |
119 |
Q |
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|||||| | ||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
32310278 |
tgaataaggctaatgagatctgttggtttcttgataatctaaaggaggacacaacattggaaaaatcggttgcgatttcattcagcaaaggctgtacgac |
32310377 |
T |
|
| Q |
120 |
tttcaaggaacagggcaaccagacccaagtatacctctcgatttcctcagtcagatgaggcaaaactgtcctgacaacaataagaa |
205 |
Q |
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||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||| |
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| T |
32310378 |
tttcaaggaacagggcaaccagatccgagtatacctctcgattttctcagtcagatgaggctaaactgtcctgacaacagtaagaa |
32310463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 20 - 209
Target Start/End: Complemental strand, 32786997 - 32786808
Alignment:
| Q |
20 |
tgaatatgactaatgagatctgttggtttcttgataatctgaaggtgcacacaacattggaaaaatcggttgcgatttcattcagcagaggctgtacgac |
119 |
Q |
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|||||| | |||||||||||||||||||||||||||| || ||| | ||||||||||||||||||||||||||||||| ||||||| |||||||||||| |
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| T |
32786997 |
tgaataaggctaatgagatctgttggtttcttgataaactacaggaggacacaacattggaaaaatcggttgcgatttctttcagcaaaggctgtacgac |
32786898 |
T |
|
| Q |
120 |
tttcaaggaacagggcaaccagacccaagtatacctctcgatttcctcagtcagatgaggcaaaactgtcctgacaacaataagaataat |
209 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||| |
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| T |
32786897 |
tttcaaggaacagggcaaccagacccaagtatacctctcgattttctcagtcagatgaggctaaactgtcctgacaacagtaagaataat |
32786808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 20 - 205
Target Start/End: Complemental strand, 32564542 - 32564357
Alignment:
| Q |
20 |
tgaatatgactaatgagatctgttggtttcttgataatctgaaggtgcacacaacattggaaaaatcggttgcgatttcattcagcagaggctgtacgac |
119 |
Q |
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|||||| | ||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||| ||| |||||||| |
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| T |
32564542 |
tgaataaggctaatgagatctgttggtttcttgataatctaaaggaggacacaacattggaaaaatcggttgcgatttcattcagcaaaggttgtacgac |
32564443 |
T |
|
| Q |
120 |
tttcaaggaacagggcaaccagacccaagtatacctctcgatttcctcagtcagatgaggcaaaactgtcctgacaacaataagaa |
205 |
Q |
| |
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||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||| |
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| T |
32564442 |
tttcaaggaacagggcaaccagatccgagtatacctctcgattttctcagtcagatgaggctaaactgtcctgacaacagtaagaa |
32564357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 29 - 205
Target Start/End: Complemental strand, 32814196 - 32814020
Alignment:
| Q |
29 |
ctaatgagatctgttggtttcttgataatctgaaggtgcacacaacattggaaaaatcggttgcgatttcattcagcagaggctgtacgactttcaagga |
128 |
Q |
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||||||||||||||||||||||||||||| | |||| | ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |
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| T |
32814196 |
ctaatgagatctgttggtttcttgataatttaaaggaggacacaacattggaaaaatcggttgcgatttcattcagcaaaggttgtacgactttcaagga |
32814097 |
T |
|
| Q |
129 |
acagggcaaccagacccaagtatacctctcgatttcctcagtcagatgaggcaaaactgtcctgacaacaataagaa |
205 |
Q |
| |
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|||||||||||||| || ||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||| |
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| T |
32814096 |
acagggcaaccagatccgagtatacctctcgattttctcagtcagatgaggctaaactgtcctgacaacagtaagaa |
32814020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 30 - 205
Target Start/End: Original strand, 32306155 - 32306330
Alignment:
| Q |
30 |
taatgagatctgttggtttcttgataatctgaaggtgcacacaacattggaaaaatcggttgcgatttcattcagcagaggctgtacgactttcaaggaa |
129 |
Q |
| |
|
||||||||||||||||||||| |||||| | ||| | ||||||| |||||||||||||||| |||||||||||||| ||| |||||||||||||||||| |
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| T |
32306155 |
taatgagatctgttggtttctggataatatacaggaggacacaaccttggaaaaatcggttgtgatttcattcagcaaaggttgtacgactttcaaggaa |
32306254 |
T |
|
| Q |
130 |
cagggcaaccagacccaagtatacctctcgatttcctcagtcagatgaggcaaaactgtcctgacaacaataagaa |
205 |
Q |
| |
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|||||||||||||||| ||||||||||||||||| |||||| |||||| | ||||||||||||| ||| |||||| |
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| T |
32306255 |
cagggcaaccagacccgagtatacctctcgattttttcagtctgatgagactaaactgtcctgactacagtaagaa |
32306330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 45 - 161
Target Start/End: Original strand, 32316568 - 32316684
Alignment:
| Q |
45 |
gtttcttgataatctgaaggtgcacacaacattggaaaaatcggttgcgatttcattcagcagaggctgtacgactttcaaggaacagggcaaccagacc |
144 |
Q |
| |
|
||||||||||||| | |||| | ||||||||||| |||||||||||||||||||||| |||| ||| ||||||||||| |||||||| | |||| |||| |
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| T |
32316568 |
gtttcttgataatataaaggaggacacaacattgaaaaaatcggttgcgatttcatttagcaaaggttgtacgactttaaaggaacatgacaactagact |
32316667 |
T |
|
| Q |
145 |
caagtatacctctcgat |
161 |
Q |
| |
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| | ||||||||||||| |
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| T |
32316668 |
cgaatatacctctcgat |
32316684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 45 - 199
Target Start/End: Original strand, 28174552 - 28174704
Alignment:
| Q |
45 |
gtttcttgataatctgaaggtgcacacaacattggaaaaatcggttgcgatttcattcagcagaggctgtacgactttcaaggaacagggcaaccagacc |
144 |
Q |
| |
|
||||||||||||| |||||| |||||||||||| |||||| |||| ||||| ||| || || |||||| ||||| ||||||||| ||||||||||| |
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| T |
28174552 |
gtttcttgataatgtgaagg---acacaacattggcaaaatcagttgtgatttgatttgacaaagtctgtacaactttaaaggaacagcgcaaccagacc |
28174648 |
T |
|
| Q |
145 |
-caagtatacctctcgatttcctcagtcagatgaggcaaaactgtcctgacaacaa |
199 |
Q |
| |
|
||||| |||| ||||| || ||||||||||||| ||||||||| |||||||| |
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| T |
28174649 |
tgtcgtatagctcttgattttcttagtcagatgaggctaaactgtccagacaacaa |
28174704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 119 - 199
Target Start/End: Original strand, 28171417 - 28171497
Alignment:
| Q |
119 |
ctttcaaggaacagggcaaccagacccaagtatacctctcgatttcctcagtcagatgaggcaaaactgtcctgacaacaa |
199 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||| ||| ||||| || ||| |||||||||||||||||| |||||||| |
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| T |
28171417 |
ctttcaaggaacagcgcaaccagacctgagtatacttcttgatttgcttagtaagatgaggcaaaactgtcaagacaacaa |
28171497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 151 - 209
Target Start/End: Original strand, 32317376 - 32317434
Alignment:
| Q |
151 |
tacctctcgatttcctcagtcagatgaggcaaaactgtcctgacaacaataagaataat |
209 |
Q |
| |
|
||||||||||||| || ||||| ||||||||||| ||||||||||||||| |||||||| |
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|
| T |
32317376 |
tacctctcgattttctaagtcatatgaggcaaaattgtcctgacaacaattagaataat |
32317434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 149 - 199
Target Start/End: Original strand, 28183044 - 28183094
Alignment:
| Q |
149 |
tatacctctcgatttcctcagtcagatgaggcaaaactgtcctgacaacaa |
199 |
Q |
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||||| ||| |||||||| ||||||||||||||||||||||| |||||||| |
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| T |
28183044 |
tatacttcttgatttccttagtcagatgaggcaaaactgtccagacaacaa |
28183094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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