View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21376_high_16 (Length: 222)
Name: NF21376_high_16
Description: NF21376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21376_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 158; Significance: 3e-84; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 20 - 213
Target Start/End: Original strand, 24687348 - 24687541
Alignment:
| Q |
20 |
atcacaaacacaaaatatcaaccaaacctagtcacacgaatcttacacctgatcttcctgctgtggttccggatttggaggttgagcaataggaacagcc |
119 |
Q |
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| T |
24687348 |
atcacaaacacaaaatatcaaacaaacctaacaaaatgaatcttacacctgagcttcctgctgtgattctggatttggaggttgagcaataggaacagcc |
24687447 |
T |
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| Q |
120 |
cttgaatttgtaggaaggaagagcttaacgatactatgaatgtagttgaagaaacagaaagtagtaaccatcaaaaggaatatgttgatgatgt |
213 |
Q |
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| T |
24687448 |
cttgaatttgtaggaaggaagagcttaacgatactatgaatgtagttgaagaaacagaaagtagtaaccatcaaaaggaatatgttgatgatgt |
24687541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 128 - 208
Target Start/End: Original strand, 24679856 - 24679936
Alignment:
| Q |
128 |
tgtaggaaggaagagcttaacgatactatgaatgtagttgaagaaacagaaagtagtaaccatcaaaaggaatatgttgat |
208 |
Q |
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||||||||| ||||| ||| ||||| ||| ||| ||||||||||||| |||| ||||||||| |||||||||| |||||| |
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| T |
24679856 |
tgtaggaagaaagagtttagcgatatcatggatgcagttgaagaaacataaagaagtaaccattaaaaggaataagttgat |
24679936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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