View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21376_high_3 (Length: 559)
Name: NF21376_high_3
Description: NF21376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21376_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 500; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 24 - 543
Target Start/End: Complemental strand, 39289544 - 39289025
Alignment:
| Q |
24 |
ataaccatagaaggataagagctaaccaaccggaaaaacggtggattcgctcgaaaacattgtggtggagatgtcgaataactggaaaagctgcgagcga |
123 |
Q |
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| T |
39289544 |
ataaccatagaaggataagagctaaccaaccggaaaaacggtggattcgctcgaaaacattgtggtggagatgtcgaataactggaaaagctgcaagcga |
39289445 |
T |
|
| Q |
124 |
agagagtgtaatgagtgagaggatggcgaatgcaacaccgagtatctccggagaagaattggttttgtcgttgcttttgatcgtgagtacgagagaataa |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39289444 |
agagagtgtaatgagtgagaggatggcgaatgcaacaccgagtatctccggagaagaattggttttgtcgttgcttttgatcgtgagtacgagagaataa |
39289345 |
T |
|
| Q |
224 |
actagccatgctatcgaagaaacgccgcagccactatgaattcctccaagactctgaagaaatgaagttattgctgttttgattctaagagaaacacaag |
323 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39289344 |
actagccatgctatcgaagaaacgccgcagccactatgaattcctccaatacattgaagaaatgaagttattgctgttttgattctaagagaaacacaag |
39289245 |
T |
|
| Q |
324 |
gcttccctatagttttgacaacaaaccagtaaagaagtcttaaaaccgcctcacttcgacatagtgttaaagctagaatgttaccaatggagaaaagtgt |
423 |
Q |
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| T |
39289244 |
gcttccctatagttttgacaacaaaccagtaaagaagtcttaaaaccgcctcacttcgacatagtgttaaagctagaatgttaccaatggagaaaagtgt |
39289145 |
T |
|
| Q |
424 |
agctcttgatttaccatatggaaaatgccctaaagctgaaagagcaagtgctaacatattcaaggttatgcaaaccaagaatagtcctttgtaaactgtg |
523 |
Q |
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| T |
39289144 |
agctcttgatttaccatatggaaaatgccctaaagctgaaagagcaagtgctaacatattcaaggttatgcaaaccaagaatagtcctttgtaaactgtg |
39289045 |
T |
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| Q |
524 |
aaaccttgatccagcagaat |
543 |
Q |
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| T |
39289044 |
aaaccttgatctagcagaat |
39289025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 26 - 543
Target Start/End: Complemental strand, 39296422 - 39295908
Alignment:
| Q |
26 |
aaccatagaaggataagagctaaccaaccggaaaaacggtggattcgctcgaaaacattgtggtggagatgtcgaataactggaaaagctgcgagcgaag |
125 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |||||||| ||||| ||||||| |||||||||| |||||||| |
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| T |
39296422 |
aaccatagaaggataagagctaaccaaccggcaaaacggtggattcgctcaaaaacgttgtggtgaagatgacgaataaaaggaaaagctgagagcgaag |
39296323 |
T |
|
| Q |
126 |
agagtgtaatgagtgagaggatggcgaatgcaacaccgagtatctccggagaagaattggttttgtcgttgcttttgatcgtgagtacgagagaataaac |
225 |
Q |
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|||||||| ||| ||||| |||||||||||||| ||||| ||||| ||||||| || ||| |||||| || |||||||||| ||||||||||| || |
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| T |
39296322 |
tgagtgtaaggagcgagagaatggcgaatgcaacgccgagaatctctggagaag---tgttttcatcgttgtttgtgatcgtgagaacgagagaatatac |
39296226 |
T |
|
| Q |
226 |
tagccatgctatcgaagaaacgccgcagccactatgaattcctccaagactctgaagaaatgaagttattgctgttttgattctaagagaaacacaaggc |
325 |
Q |
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|||||||||||| |||||||| ||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
39296225 |
tagccatgctattgaagaaacaccgcagccactatgaattcctccaatacattgaaggaatgaagttattgctgttttgattctaagagaaacacaaggt |
39296126 |
T |
|
| Q |
326 |
ttccctatagttttgacaacaaaccagtaaagaagtcttaaaaccgcctcacttcgacatagtgttaaagctagaatgttaccaatggagaaaagtgtag |
425 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
39296125 |
ttccctatagttttgacaacaaaccagtaaagaagtcttaaaaccacctcgcttcgacatagtgttaaagctaggatgttaccaatggagaaaagtgtag |
39296026 |
T |
|
| Q |
426 |
ctcttgatttaccatatggaaaatgccctaaagctgaaagagcaagtgctaacatattcaaggttatgcaaaccaagaatagtcctttgtaaactgtgaa |
525 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| | |
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| T |
39296025 |
ctcttgatttaccatatggaaaatgccctaaaactgaaagagcaagtgctaacatattcaaggttatgcaaaccaagaacagtcctttgtacactgtgca |
39295926 |
T |
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| Q |
526 |
accttgatccagcagaat |
543 |
Q |
| |
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|||||||||||||||||| |
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| T |
39295925 |
accttgatccagcagaat |
39295908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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