View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21376_high_4 (Length: 527)
Name: NF21376_high_4
Description: NF21376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21376_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 294; Significance: 1e-165; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 207 - 519
Target Start/End: Original strand, 42850162 - 42850475
Alignment:
| Q |
207 |
atgaataactctaaacaacccacatcatcactcaaagagataacaatacaaagagcaaaaaaggggggaaaattggaacactaatagcacttcaattgga |
306 |
Q |
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| T |
42850162 |
atgaataactctaaacaacccacatcatcgctcaaagagataacaatacaaagagcaaaacaggggggaaaattggaacactaatagcacttcaattgga |
42850261 |
T |
|
| Q |
307 |
ttactaccatgaattagtgatcacacatgacataagaatcactatttataataagccctctcacaagaagactgaacccattgtc-aaaaaacctatcac |
405 |
Q |
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| T |
42850262 |
ttactaccatgaattagtgatcacacatgacataagaatcactatttataataagccctttcacaagaagactgaacccattgtcaaaaaaacctatcac |
42850361 |
T |
|
| Q |
406 |
aaacaaataacaccaaacacatataattccacaagactagcacaaacatcgacaagttgttatgcgaatctgtgaatcaaccattgtgtgtcgcttctac |
505 |
Q |
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| T |
42850362 |
aaacaaataacaccaaacacatataattccacaagactagcacaaacatcgacaagttgttatgcgaatctgtgaatcaaccattgtgtgtcgcttctac |
42850461 |
T |
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| Q |
506 |
ttgtgagtattatc |
519 |
Q |
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| T |
42850462 |
ttgtgagtattatc |
42850475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 18 - 163
Target Start/End: Original strand, 42850015 - 42850161
Alignment:
| Q |
18 |
agaacctcccctgctattaacttt-gtttagtttctgttaaaatatacacattgcttgacaaatatctcacctcctgtaacaagcagtgacctaggaacg |
116 |
Q |
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| T |
42850015 |
agaacctcccctgctattaacttttgtttagtttctgttaaaatatacacattgcttgacaaatatctcacctcctgtaacaagcagtgacctaggaacg |
42850114 |
T |
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| Q |
117 |
tttcttccctaattttcaagcaatgtgaatctcactaaccaacaaac |
163 |
Q |
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| T |
42850115 |
tttcttccctaattttcaagcaatgtgaatctcactagccaacaaac |
42850161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 175 - 454
Target Start/End: Complemental strand, 30941790 - 30941513
Alignment:
| Q |
175 |
atgcaaactccaagatttaatcaaaatccaatatgaataactctaaacaacccacatcatcactcaaagagataacaatacaaagagcaaaaaagggggg |
274 |
Q |
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| T |
30941790 |
atgcaaactccaatatttaatcaaaatccaatatgagtaactccaagcaacccatgtcatcagtcaaagagataaccatacaaatagcaaaaaa-gggga |
30941692 |
T |
|
| Q |
275 |
aaaattggaacactaatagcacttcaattggattactaccatgaattagtgatcacacatgacat-aagaatcactatttataataagccctctcacaag |
373 |
Q |
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||| ||||||||| ||||||||| ||||||||||| ||||| ||| |||||||||| |||||||| |||| ||||||||| ||| | | ||| ||||| | |
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| T |
30941691 |
aaatttggaacaccaatagcactgcaattggattaataccacgaagtagtgatcactcatgacataaagagtcactatttgtaaaatgtcctttcacagg |
30941592 |
T |
|
| Q |
374 |
aagactgaacccattgtcaaaaaacctatcacaaacaaataacaccaaacacatataattccacaagactagcacaaacat |
454 |
Q |
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| T |
30941591 |
aagactgaacccaatgtc--aaaacctatcacaaaccaataacaccaaacacctataattccgccagactagcaaaaacat |
30941513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 41 - 137
Target Start/End: Complemental strand, 30941887 - 30941792
Alignment:
| Q |
41 |
tgtttagtttctgttaaaatatacacattgcttgacaaatatctcacctcctgtaacaagcagtgacctaggaacgtttcttccctaattttcaagc |
137 |
Q |
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| T |
30941887 |
tgtttagcttccgttgaaatataaacattgcttg-caaatatttcacctcccgtaacaagcagtgacctaggaacatttcttctctaattttcaagc |
30941792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 483 - 519
Target Start/End: Complemental strand, 30941156 - 30941120
Alignment:
| Q |
483 |
caaccattgtgtgtcgcttctacttgtgagtattatc |
519 |
Q |
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| T |
30941156 |
caaccattgtatgtcgcttctacttgtgagtattatc |
30941120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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