View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21376_high_6 (Length: 458)
Name: NF21376_high_6
Description: NF21376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21376_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 176; Significance: 1e-94; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 2 - 210
Target Start/End: Original strand, 17083772 - 17083984
Alignment:
| Q |
2 |
gttaaaacagttgactgaatatcgttgtctcttaacacaatcttcatacaaaatgatgaatatggaccaatgaaaatcctttttgatacatcaatgta-- |
99 |
Q |
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| T |
17083772 |
gttaaaacagttgactgaatatcgttgtctcttaacacaatcttcatacaaaatgatgaatctgcaccaatgaaaatcctatttgatacatcaatgtata |
17083871 |
T |
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| Q |
100 |
--gctttctaagctagttgaatttggtcacaattgtgggaaaattgagtttgcaaaagaataacattgaaatatcttagtcgcggtacatcgtgtttctg |
197 |
Q |
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| T |
17083872 |
gagctttctaagcaagttgaatttggtcacaattgtgggaaaattgagtttgcaaaagaataacattgaaatatcttagtcgcggtacatcgtgtttctg |
17083971 |
T |
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| Q |
198 |
tggcacttgattc |
210 |
Q |
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| T |
17083972 |
tcgcacttgattc |
17083984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 55 - 287
Target Start/End: Original strand, 17091952 - 17092192
Alignment:
| Q |
55 |
tgatgaatatggaccaatgaaaatcctttttgatacatcaatgta----gctttctaagctagttgaatttggtcacaattgtgggaaaattgagtttgc |
150 |
Q |
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| T |
17091952 |
tgatgaatttgcaccaatgaaaatcctttttgatatgtcaatgtatagagctttctaagcaagttgaatttggtcacaattgtgggaaaattaagtttgc |
17092051 |
T |
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| Q |
151 |
aaaagaataacattgaaatatcttagtcgcggtacatcgtgtttctgtggcacttgattcttattcttgacaaaaacatgtctgaa--atatatattttt |
248 |
Q |
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| T |
17092052 |
aaaataataacattgaaatatcttggtcgcggtacatcttgtttccgtggcacttgactcttattcttgacaaaaacatgtctgaaatatatatattttt |
17092151 |
T |
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| Q |
249 |
ctagattgaa--ctctgccaagaaaatggttagtgaataat |
287 |
Q |
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| T |
17092152 |
cttgattgaactctctgccaagaaaatggttagtgagtaat |
17092192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 200 - 331
Target Start/End: Original strand, 17084038 - 17084175
Alignment:
| Q |
200 |
gcacttgattcttattcttgacaaaaacatgtctgaaatatatatttttctagattgaactctgccaagaaaatggttagtg------aataataatgtt |
293 |
Q |
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| T |
17084038 |
gcacttgatttttattcttgacaaaaacatgtctgaaatatatatttttcttgattgaactctgccaagaaaatggttagtgaataataataataatgtt |
17084137 |
T |
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| Q |
294 |
gtagggcttttcccttaaaaaagaagaagttgcagggc |
331 |
Q |
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| T |
17084138 |
gtagggcttttcccttaaaaaagaagaagctgtagggc |
17084175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 55 - 220
Target Start/End: Original strand, 17098568 - 17098737
Alignment:
| Q |
55 |
tgatgaatatggaccaatgaaaatcctttttgatacatcaatgtag----ctttctaagctagttgaatttggtcacaattgtgggaaaattgagtttgc |
150 |
Q |
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| T |
17098568 |
tgatgaatatggaccaatgaaaatcctttttgagatgtcagtatagagagctttcttaactagttgaatttggtcacaaatgtgggaaaattgagtttgc |
17098667 |
T |
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| Q |
151 |
aaaagaataacattgaaatatcttagtcgcggtacatcgtgtttctgtggcacttgattcttattcttga |
220 |
Q |
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| T |
17098668 |
aagagaataacattgaaatatcttggtcgccgtatatcctgttcccgtggcacttgattcttgttcttga |
17098737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 397 - 441
Target Start/End: Original strand, 17084229 - 17084273
Alignment:
| Q |
397 |
ttaaagttatatattttgaaagcattttaaattgaatcaccatat |
441 |
Q |
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| T |
17084229 |
ttaaaattatatattttgaaaacattttaaattgaatcaccatat |
17084273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 99 - 169
Target Start/End: Original strand, 17080138 - 17080207
Alignment:
| Q |
99 |
agctttctaagctagttgaatttggtcacaattgtgggaaaattgagtttgcaaaagaataacattgaaat |
169 |
Q |
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| T |
17080138 |
agctttcctagctagttgaatttggtcacaattatgggaaaa-tgagattgtaagagaataactttgaaat |
17080207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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