View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21376_low_1 (Length: 647)
Name: NF21376_low_1
Description: NF21376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21376_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 412; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 205 - 631
Target Start/End: Original strand, 44493222 - 44493649
Alignment:
| Q |
205 |
ttataggaaagggctgctactactagattagtcagtgtagatatatagaacgaaatgatacaagtatgcttaaccttccatatagagagagttcaaataa |
304 |
Q |
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| T |
44493222 |
ttataggaaagggctgctactactagattagtcagtgtagatatatagaacgaaatgatacaagtatgcttaaccttccatatagagagagttcaaataa |
44493321 |
T |
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| Q |
305 |
actaataaagcatttaacttgaatgaagataagtatatatcttgctgtctctacgtacagagaaactcacagtcacaactatattt-catttatgcactc |
403 |
Q |
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| T |
44493322 |
actaataaagcatttaacttgaatgaagataagtatatatcttgctgtctctacgtacagagaaactcacagtcacaactatattttcatttatgcactc |
44493421 |
T |
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| Q |
404 |
aactaccatatttatattgccaattacccccactctcaaacacactataattattataatctaaatctcatagatccagcacaactacaattattctctc |
503 |
Q |
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| T |
44493422 |
aactaccatatttatattgccaataacccccactctcaaaaacactataattattataatctaaatctcatagatccagcacaactacaattattctctc |
44493521 |
T |
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| Q |
504 |
ctttaccatgagagggaaaacagcatcattgctggctctcatgccaattctctccacaattttagttctactattttcagttaccaatttctcaaaatta |
603 |
Q |
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| T |
44493522 |
ctttaccatgagagggaaaacagcatcattgctggctctcatgccaattctctccacaattttagttctactattttcagttaccaatttctcaaaatta |
44493621 |
T |
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| Q |
604 |
gcaacagcagcaacactccaaacaaacc |
631 |
Q |
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| T |
44493622 |
gcaacagcagcaacactccaaacaaacc |
44493649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 44492598 - 44492673
Alignment:
| Q |
1 |
tataagtacatagtttttataaaccgattttgtatagttgaattagacacgtacactgagtagttcagggggatcc |
76 |
Q |
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| T |
44492598 |
tataagtagatagtttttataaatcgattttgtatagttgaattaaacacgtacattgagtagttcagggggatcc |
44492673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 144 - 207
Target Start/End: Original strand, 44492741 - 44492811
Alignment:
| Q |
144 |
taacatgaaaaattgaatctaaatttggttactt-------gggttccccaacctctaagttgctttgtta |
207 |
Q |
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| T |
44492741 |
taacatgaaaaattaaatctaaatttggttacttgggacttgggttccccaacctctaagttgctttgtta |
44492811 |
T |
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