View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21376_low_12 (Length: 241)
Name: NF21376_low_12
Description: NF21376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21376_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 13 - 225
Target Start/End: Complemental strand, 21596861 - 21596649
Alignment:
| Q |
13 |
aatatttcggaacctaatgcatttttaatagtccaaccttgttggtaagagcatcaatctatagttatatgagagctatctatcactcattagttctcgc |
112 |
Q |
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| T |
21596861 |
aatatttcggaacctaatgcatttttaatagtccaaccttgttggtaagagcatcaatctatagttatatgagagctatctatcactcattagttctcgc |
21596762 |
T |
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| Q |
113 |
aatttggatccaactagtatgactcaattgttggtgttttgaatctgtattacccttcctattagaattgtgaacaattgctattttggcaactatatag |
212 |
Q |
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| T |
21596761 |
agtttggatccaactagtatgactcaattgttggtgttttgaatctgtattacccttcctattagaattgtgaacaattgctattttggtaactatatag |
21596662 |
T |
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| Q |
213 |
atcttatgctaat |
225 |
Q |
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| T |
21596661 |
atcttatgctaat |
21596649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 16 - 173
Target Start/End: Complemental strand, 21591681 - 21591522
Alignment:
| Q |
16 |
atttcggaacctaatgcatttttaatagtccaaccttgttggtaagagcatcaatctatagttatatgagagctatctat--cactcattagttctcgca |
113 |
Q |
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| T |
21591681 |
atttgggaacctaaggtatttttaatagtccaaccttgttggtaagagcatcaacccatagttatataagagctatctatatcactcattagttgtcgca |
21591582 |
T |
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| Q |
114 |
atttggatccaactagtatgactcaattgttggtgttttgaatctgtattacccttccta |
173 |
Q |
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| T |
21591581 |
agttggatccaactagtatgactcaattgttggtgttttgaatctgtgttacccttccta |
21591522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 176 - 225
Target Start/End: Complemental strand, 21591478 - 21591429
Alignment:
| Q |
176 |
agaattgtgaacaattgctattttggcaactatatagatcttatgctaat |
225 |
Q |
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||||||| || ||||||||||||||||||||||| ||||| ||||||||| |
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| T |
21591478 |
agaattgagagcaattgctattttggcaactatacagatcgtatgctaat |
21591429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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