View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21376_low_2 (Length: 580)

Name: NF21376_low_2
Description: NF21376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21376_low_2
NF21376_low_2
[»] chr1 (33 HSPs)
chr1 (42-531)||(37189565-37190051)
chr1 (403-570)||(10824546-10824714)
chr1 (403-570)||(22683143-22683311)
chr1 (403-531)||(18844461-18844589)
chr1 (403-518)||(37189370-37189484)
chr1 (403-517)||(15825752-15825864)
chr1 (403-531)||(19056152-19056280)
chr1 (403-567)||(19056330-19056496)
chr1 (403-518)||(18844678-18844794)
chr1 (413-529)||(10824380-10824496)
chr1 (278-399)||(38859908-38860029)
chr1 (280-399)||(10155968-10156087)
chr1 (339-399)||(48392417-48392477)
chr1 (444-531)||(22683358-22683445)
chr1 (280-399)||(47022759-47022878)
chr1 (339-399)||(3346843-3346903)
chr1 (339-399)||(30745401-30745461)
chr1 (339-399)||(30766852-30766912)
chr1 (467-518)||(22683290-22683341)
chr1 (341-399)||(23908342-23908400)
chr1 (280-399)||(49902525-49902644)
chr1 (342-399)||(42456629-42456686)
chr1 (280-378)||(42517246-42517344)
chr1 (339-399)||(7742790-7742850)
chr1 (341-399)||(13131953-13132011)
chr1 (341-399)||(29149561-29149619)
chr1 (341-399)||(44462491-44462549)
chr1 (339-399)||(5558366-5558425)
chr1 (339-399)||(10907659-10907719)
chr1 (340-399)||(5975045-5975104)
chr1 (467-518)||(10824516-10824567)
chr1 (467-518)||(19056297-19056348)
chr1 (339-399)||(26835395-26835455)
[»] chr8 (27 HSPs)
chr8 (403-531)||(13884491-13884619)
chr8 (397-570)||(42126378-42126553)
chr8 (403-530)||(13884706-13884833)
chr8 (403-570)||(29714544-29714712)
chr8 (397-531)||(11867899-11868032)
chr8 (410-531)||(2554067-2554188)
chr8 (411-513)||(29714777-29714879)
chr8 (403-531)||(42126601-42126729)
chr8 (280-399)||(42072485-42072604)
chr8 (280-399)||(35806851-35806970)
chr8 (339-399)||(16591386-16591446)
chr8 (339-399)||(21525415-21525475)
chr8 (340-392)||(16523170-16523222)
chr8 (447-529)||(14996678-14996761)
chr8 (341-399)||(22324653-22324711)
chr8 (339-392)||(26021460-26021513)
chr8 (470-518)||(2554002-2554050)
chr8 (339-399)||(24065330-24065390)
chr8 (339-399)||(33934380-33934440)
chr8 (339-399)||(42013929-42013989)
chr8 (467-518)||(14996608-14996659)
chr8 (403-498)||(43416265-43416360)
chr8 (339-392)||(16818984-16819037)
chr8 (339-399)||(19334840-19334900)
chr8 (467-518)||(29714691-29714742)
chr8 (419-495)||(26745991-26746067)
chr8 (340-392)||(43282863-43282915)
[»] chr2 (30 HSPs)
chr2 (403-568)||(2916380-2916545)
chr2 (403-570)||(16973066-16973234)
chr2 (403-531)||(44594455-44594583)
chr2 (404-570)||(38982734-38982901)
chr2 (403-531)||(16973281-16973409)
chr2 (403-531)||(40987659-40987787)
chr2 (403-518)||(44594250-44594366)
chr2 (403-518)||(38982559-38982674)
chr2 (403-518)||(11533674-11533790)
chr2 (404-531)||(2916594-2916721)
chr2 (426-570)||(24126107-24126245)
chr2 (403-531)||(13559519-13559646)
chr2 (340-399)||(6318470-6318529)
chr2 (426-531)||(24125876-24125975)
chr2 (280-399)||(29846499-29846618)
chr2 (280-399)||(42769710-42769829)
chr2 (278-399)||(3956629-3956750)
chr2 (407-495)||(40987899-40987987)
chr2 (280-399)||(14186390-14186509)
chr2 (403-468)||(24125672-24125737)
chr2 (339-399)||(14942055-14942115)
chr2 (339-399)||(40277299-40277359)
chr2 (339-399)||(41674717-41674777)
chr2 (467-518)||(16973213-16973264)
chr2 (340-399)||(33009730-33009789)
chr2 (341-399)||(2888098-2888156)
chr2 (339-399)||(19181605-19181665)
chr2 (467-518)||(38982704-38982755)
chr2 (467-518)||(44594385-44594436)
chr2 (339-399)||(14539715-14539775)
[»] chr3 (34 HSPs)
chr3 (400-570)||(46003425-46003596)
chr3 (403-531)||(40244627-40244756)
chr3 (403-531)||(51663467-51663595)
chr3 (403-570)||(51663252-51663420)
chr3 (405-570)||(20537930-20538097)
chr3 (404-512)||(40364194-40364301)
chr3 (403-531)||(20538151-20538279)
chr3 (404-531)||(46003251-46003378)
chr3 (403-531)||(40364043-40364171)
chr3 (340-399)||(3178760-3178819)
chr3 (340-399)||(13856156-13856215)
chr3 (339-399)||(10839391-10839451)
chr3 (403-463)||(40244873-40244933)
chr3 (340-399)||(5391514-5391573)
chr3 (280-399)||(8950456-8950575)
chr3 (341-399)||(19649385-19649443)
chr3 (280-399)||(21853254-21853373)
chr3 (339-400)||(6280370-6280431)
chr3 (275-399)||(44994915-44995040)
chr3 (341-392)||(20382583-20382634)
chr3 (467-518)||(46003395-46003446)
chr3 (339-399)||(1781819-1781879)
chr3 (339-399)||(36539689-36539749)
chr3 (339-399)||(40845928-40845988)
chr3 (339-399)||(54546961-54547021)
chr3 (341-399)||(19644340-19644398)
chr3 (341-399)||(23467507-23467565)
chr3 (339-392)||(27642724-27642777)
chr3 (339-399)||(32352904-32352964)
chr3 (339-399)||(39352251-39352310)
chr3 (339-399)||(43347347-43347407)
chr3 (467-513)||(20538076-20538122)
chr3 (339-400)||(33103799-33103860)
chr3 (359-399)||(47889783-47889823)
[»] chr4 (34 HSPs)
chr4 (397-570)||(39161284-39161457)
chr4 (403-518)||(50509358-50509473)
chr4 (398-531)||(55173470-55173603)
chr4 (403-517)||(47096802-47096914)
chr4 (403-531)||(39161504-39161632)
chr4 (404-513)||(37996068-37996177)
chr4 (403-518)||(55173336-55173452)
chr4 (278-399)||(17888500-17888621)
chr4 (278-399)||(31377447-31377567)
chr4 (403-531)||(47097017-47097142)
chr4 (339-397)||(11054515-11054573)
chr4 (280-399)||(16338165-16338284)
chr4 (280-399)||(1535828-1535947)
chr4 (341-399)||(52632575-52632633)
chr4 (339-399)||(49284414-49284474)
chr4 (403-450)||(2623449-2623496)
chr4 (341-398)||(12792244-12792301)
chr4 (339-392)||(37801275-37801328)
chr4 (339-392)||(47084076-47084129)
chr4 (339-399)||(20818624-20818684)
chr4 (339-399)||(34241050-34241110)
chr4 (339-399)||(36012196-36012256)
chr4 (339-399)||(50328853-50328913)
chr4 (341-392)||(10094406-10094457)
chr4 (339-399)||(25954807-25954867)
chr4 (340-399)||(9742545-9742604)
chr4 (467-518)||(39161436-39161487)
chr4 (341-399)||(35322717-35322775)
chr4 (341-399)||(46583554-46583612)
chr4 (363-399)||(322584-322620)
chr4 (419-495)||(9738136-9738212)
chr4 (339-391)||(19124749-19124801)
chr4 (339-399)||(46474051-46474111)
chr4 (467-518)||(47096947-47096999)
[»] scaffold0060 (1 HSPs)
scaffold0060 (403-531)||(22922-23050)
[»] chr5 (23 HSPs)
chr5 (403-570)||(21249364-21249532)
chr5 (278-399)||(8456913-8457034)
chr5 (281-399)||(38397655-38397773)
chr5 (340-399)||(10081202-10081261)
chr5 (280-399)||(6257362-6257481)
chr5 (340-399)||(9737993-9738054)
chr5 (341-399)||(11856352-11856410)
chr5 (341-399)||(42119679-42119737)
chr5 (339-399)||(23218542-23218602)
chr5 (340-399)||(16618582-16618641)
chr5 (340-399)||(25560339-25560398)
chr5 (339-398)||(29491425-29491483)
chr5 (340-399)||(33271282-33271341)
chr5 (402-452)||(21249629-21249679)
chr5 (280-399)||(37168985-37169104)
chr5 (280-399)||(39862439-39862558)
chr5 (340-399)||(29790231-29790290)
chr5 (467-517)||(21249511-21249561)
chr5 (274-399)||(15631670-15631796)
chr5 (339-399)||(614403-614463)
chr5 (339-399)||(36769085-36769145)
chr5 (342-391)||(15475408-15475457)
chr5 (339-391)||(27916205-27916257)
[»] chr7 (30 HSPs)
chr7 (404-531)||(28715645-28715772)
chr7 (403-531)||(41985912-41986040)
chr7 (398-513)||(30862215-30862330)
chr7 (397-531)||(28715859-28715993)
chr7 (403-531)||(6474282-6474411)
chr7 (397-570)||(6474458-6474631)
chr7 (403-570)||(47373464-47373633)
chr7 (418-531)||(47373679-47373792)
chr7 (404-531)||(30862437-30862564)
chr7 (403-473)||(41986183-41986253)
chr7 (280-399)||(44164695-44164814)
chr7 (397-454)||(22226666-22226723)
chr7 (339-399)||(19334571-19334631)
chr7 (339-399)||(29981124-29981184)
chr7 (280-399)||(34259575-34259694)
chr7 (280-399)||(34707173-34707292)
chr7 (339-399)||(10576730-10576790)
chr7 (339-399)||(32876541-32876601)
chr7 (340-399)||(29555951-29556010)
chr7 (340-399)||(33057669-33057728)
chr7 (280-399)||(29238095-29238214)
chr7 (419-527)||(6271188-6271296)
chr7 (339-399)||(9770716-9770776)
chr7 (339-399)||(15017830-15017890)
chr7 (339-399)||(17303125-17303185)
chr7 (339-399)||(24320450-24320510)
chr7 (419-495)||(38408153-38408229)
chr7 (467-517)||(41986058-41986108)
chr7 (540-570)||(41986087-41986117)
chr7 (339-399)||(10334235-10334295)
[»] chr6 (22 HSPs)
chr6 (396-527)||(24798843-24798974)
chr6 (403-513)||(2216813-2216923)
chr6 (406-570)||(11643754-11643919)
chr6 (403-531)||(18494736-18494862)
chr6 (418-531)||(24798642-24798755)
chr6 (397-518)||(11643979-11644099)
chr6 (403-569)||(18494911-18495077)
chr6 (403-495)||(24690357-24690449)
chr6 (400-483)||(24690611-24690694)
chr6 (280-399)||(9231806-9231925)
chr6 (339-399)||(14309809-14309869)
chr6 (280-391)||(13627605-13627716)
chr6 (339-391)||(1727944-1727996)
chr6 (339-399)||(24694662-24694722)
chr6 (343-399)||(27863756-27863812)
chr6 (467-518)||(11643898-11643949)
chr6 (466-519)||(24798769-24798822)
chr6 (339-399)||(13103129-13103189)
chr6 (339-399)||(28750661-28750721)
chr6 (419-474)||(9955643-9955698)
chr6 (419-517)||(9954825-9954923)
chr6 (339-399)||(24497585-24497645)
[»] scaffold0781 (1 HSPs)
scaffold0781 (403-513)||(5270-5380)
[»] scaffold0079 (1 HSPs)
scaffold0079 (280-399)||(54576-54695)
[»] scaffold0086 (1 HSPs)
scaffold0086 (339-399)||(20842-20902)
[»] scaffold0045 (1 HSPs)
scaffold0045 (339-395)||(34463-34519)
[»] scaffold0034 (1 HSPs)
scaffold0034 (461-517)||(108055-108111)


Alignment Details
Target: chr1 (Bit Score: 383; Significance: 0; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 42 - 531
Target Start/End: Complemental strand, 37190051 - 37189565
Alignment:
Q  42 atatcctatctgcaagagaattgtcaataacatggagtaatgatccattgtattggagctggagatcatctcctgaatcaaggtaaacttgctttaattt 141  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  37190051 atatcctatctgcaagagaattgtcaataacatggagtaatgatccattgtattggagctggagaccatctcctgaatcaaggtaaacttgctttaattt 37189952  T
Q  142 caactccttttgtttaagcttttcatgctactgaatccaataccggcacgttaataacacaaatttaaaatccctcgnnnnnnntaacacaaatttaaaa 241  Q
    ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||    
T  37189951 caactccttttgtttaagcttatcatgctactcaatccaataccggcacgttaataacacaaatttaaaatccctcgaaaaaaataacacaaatttaaaa 37189852  T
Q  242 tgtattttaaatttgaaccatgttgtcaagtgctctatgggcggttctatggccaggcgaccccaggcattcgcttggactccggcccaannnnnnngca 341  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||  ||||||||||||||       |||    
T  37189851 tgtattttaaatttgaaccatgttgtcaagtgctctatgggcggttctatggcca-gtga-cccaggcattcgcccggactccggcccaa-atttttgca 37189755  T
Q  342 atttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaatttagacttattcaatcacctggtcccttaacttaattgattgtc 441  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37189754 atttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaatttagacttattcaatcacctggtcccttaacttaattgattgtc 37189655  T
Q  442 tcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatactagttttagtcctttcgggtagtttctct 531  Q
    ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||| ||||||||||||    
T  37189654 tcaatttggtcccctatctataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcatttctggtagtttctct 37189565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 403 - 570
Target Start/End: Complemental strand, 10824714 - 10824546
Alignment:
Q  403 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatac 502  Q
    |||||||||||| | ||||||||||||||||||||||||||||||||||||| || |||||||||||| |||||||||||| |||||||||||||| |||    
T  10824714 cttattcaatcatccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtatcaatttggtcccctatgttttgcttcgttac 10824615  T
Q  503 tagttttagtcctttcgggtagtttctct-nnnnnnnngttaacttatgtaccaatttggtcccctatg 570  Q
    ||||||||||||||||  |||||||||||         ||||||||||||||||||||| |||||||||    
T  10824614 tagttttagtcctttctagtagtttctctcaaaaaaacgttaacttatgtaccaatttgatcccctatg 10824546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 403 - 570
Target Start/End: Original strand, 22683143 - 22683311
Alignment:
Q  403 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatac 502  Q
    |||||||||||||| | ||| ||||||||||||||||||||||||||||||| || |||||||||||| |||||||||||| |||||||||||| | |||    
T  22683143 cttattcaatcacccgctcctttaacttaattgattgtctcaatttggtcccctaactataatttgtatcaatttggtcccctatgttttgctttgttac 22683242  T
Q  503 tagttttagtcctttcgggtagtttctct-nnnnnnnngttaacttatgtaccaatttggtcccctatg 570  Q
    |||||||||||||||| | ||||||||||         |||||||||||||||||||||||||||||||    
T  22683243 tagttttagtcctttctgttagtttctctcaaaaaaacgttaacttatgtaccaatttggtcccctatg 22683311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 403 - 531
Target Start/End: Original strand, 18844461 - 18844589
Alignment:
Q  403 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatac 502  Q
    ||||||||| ||| |||||||||||||||||||||| ||||||||||||||| || |||||||||||| |||||||||||| |||||||||||||| |||    
T  18844461 cttattcaaccacatggtcccttaacttaattgattatctcaatttggtcccctaactataatttgtatcaatttggtcccctatgttttgcttcgttac 18844560  T
Q  503 tagttttagtcctttcgggtagtttctct 531  Q
    ||||||||||| |||| ||||||||||||    
T  18844561 tagttttagtcatttctggtagtttctct 18844589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 403 - 518
Target Start/End: Original strand, 37189370 - 37189484
Alignment:
Q  403 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatac 502  Q
    |||||||||||||| ||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||  ||||||||||| || |||    
T  37189370 cttattcaatcacccggtcc-ttaacttaattgattgtctcaatttggtctcataactataatttgtaccaatttggtcctctatgttttgctccgttac 37189468  T
Q  503 tagttttagtcctttc 518  Q
    ||||||||||||||||    
T  37189469 tagttttagtcctttc 37189484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 403 - 517
Target Start/End: Complemental strand, 15825864 - 15825752
Alignment:
Q  403 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatac 502  Q
    |||||||||||||| |||| |||||||||||||||||||||||||||||||  || ||||||||||||||||||||||||| |||||||||||| | ||     
T  15825864 cttattcaatcacccggtctcttaacttaattgattgtctcaatttggtcc--taactataatttgtaccaatttggtcccctatgttttgctttgttat 15825767  T
Q  503 tagttttagtccttt 517  Q
    |||||||||||||||    
T  15825766 tagttttagtccttt 15825752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 403 - 531
Target Start/End: Original strand, 19056152 - 19056280
Alignment:
Q  403 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatac 502  Q
    |||||||||||||||| ||||||||||||||||||||| | ||||||||||| ||  ||||||||||| |||||||||||| ||| |||||||| | |||    
T  19056152 cttattcaatcacctgatcccttaacttaattgattgtattaatttggtcccctaattataatttgtatcaatttggtcccctatattttgctttgttac 19056251  T
Q  503 tagttttagtcctttcgggtagtttctct 531  Q
    ||||||||||| |||| | ||||||||||    
T  19056252 tagttttagtcttttctgttagtttctct 19056280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 403 - 567
Target Start/End: Complemental strand, 19056496 - 19056330
Alignment:
Q  403 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatac 502  Q
    |||||||||||| | ||||||||||||||||||||||| | ||||||||||| || ||||||| ||||||||||||||  | |||||||||||| | |||    
T  19056496 cttattcaatcatccggtcccttaacttaattgattgttttaatttggtcccctaactataatctgtaccaatttggtatcctatgttttgctttgttac 19056397  T
Q  503 tagttttagtcctttcgggtagtttctct--nnnnnnnngttaacttatgtaccaatttggtcccct 567  Q
    ||||||||||| |||| |  |||||||||          ||||||||||||||||||||||||||||    
T  19056396 tagttttagtcatttctgtcagtttctctcaaaaaaaacgttaacttatgtaccaatttggtcccct 19056330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 403 - 518
Target Start/End: Complemental strand, 18844794 - 18844678
Alignment:
Q  403 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggt-cccatatctataatttgtaccaatttggtcccgtatgttttgcttcgata 501  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||||  || || |||||||||||| |||||||||||  ||||||||||| || ||    
T  18844794 cttattcaatcacccgatcccttaacttaattgattgtctcaatttggtgtccctaactataatttgtatcaatttggtcctctatgttttgctccgtta 18844695  T
Q  502 ctagttttagtcctttc 518  Q
    ||||||||||| |||||    
T  18844694 ctagttttagttctttc 18844678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 413 - 529
Target Start/End: Original strand, 10824380 - 10824496
Alignment:
Q  413 cacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatactagttttagt 512  Q
    |||| ||||| ||||||||||||||| |  |||||||||||| ||  ||||||||||| |||||||||||  ||||||||||| || |||||||||||||    
T  10824380 cacccggtcctttaacttaattgattattgcaatttggtcccctaattataatttgtatcaatttggtcctctatgttttgctccgttactagttttagt 10824479  T
Q  513 cctttcgggtagtttct 529  Q
    |||||| | ||||||||    
T  10824480 cctttctgttagtttct 10824496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 278 - 399
Target Start/End: Complemental strand, 38860029 - 38859908
Alignment:
Q  278 atgggcggttctatggccaggcgaccccaggcattcgcttggactccggcccaannnnnnngcaatttcttatgtaaatctctatgaatttcttatataa 377  Q
    |||||||||||||||||| ||||||||| |||| ||||  || |||||||||||        |||||||||||||||||  |||||||||||||||||||    
T  38860029 atgggcggttctatggcccggcgaccccgggcactcgcccgggctccggcccaaatttttttcaatttcttatgtaaattcctatgaatttcttatataa 38859930  T
Q  378 atctctataaattggacaattt 399  Q
    | | ||||||||||| ||||||    
T  38859929 acccctataaattgggcaattt 38859908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 280 - 399
Target Start/End: Original strand, 10155968 - 10156087
Alignment:
Q  280 gggcggttctatggccaggcgaccccaggcattcgcttggactccggcccaannnnnnngcaatttcttatgtaaatctctatgaatttcttatataaat 379  Q
    ||||||||||| |||| ||||||||| |||| ||||  || |||||| ||||       |||||||||| |||||||  ||||||||||||||||||||     
T  10155968 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaatttttttgcaatttcttgtgtaaattcctatgaatttcttatataaac 10156067  T
Q  380 ctctataaattggacaattt 399  Q
     |||||||||||||||||||    
T  10156068 ttctataaattggacaattt 10156087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 339 - 399
Target Start/End: Original strand, 48392417 - 48392477
Alignment:
Q  339 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 399  Q
    |||||||||| |||||||| |||||||||||||||||||||| ||||||||||| ||||||    
T  48392417 gcaatttcttgtgtaaatccctatgaatttcttatataaatccctataaattgggcaattt 48392477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 444 - 531
Target Start/End: Complemental strand, 22683445 - 22683358
Alignment:
Q  444 aatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatactagttttagtcctttcgggtagtttctct 531  Q
    ||||||||||| || || | |||||||||||||||||||  ||||||||||| || |||||||||||||||||||   ||||||||||    
T  22683445 aatttggtcccctaacttttatttgtaccaatttggtcctctatgttttgctccgttactagttttagtcctttctcttagtttctct 22683358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 280 - 399
Target Start/End: Complemental strand, 47022878 - 47022759
Alignment:
Q  280 gggcggttctatggccaggcgaccccaggcattcgcttggactccggcccaannnnnnngcaatttcttatgtaaatctctatgaatttcttatataaat 379  Q
    ||||||||||| |||| ||||||||| |||| ||||  || |||||| ||||       |||||||||| |||||||||||||||||||||||||||||     
T  47022878 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatctctatgaatttcttatataaac 47022779  T
Q  380 ctctataaattggacaattt 399  Q
      ||||||||| | ||||||    
T  47022778 tcctataaattaggcaattt 47022759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 339 - 399
Target Start/End: Complemental strand, 3346903 - 3346843
Alignment:
Q  339 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 399  Q
    ||||||| || |||||||| |||||||||||||||||||| | ||||||||||||||||||    
T  3346903 gcaatttgttgtgtaaatccctatgaatttcttatataaacccctataaattggacaattt 3346843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 339 - 399
Target Start/End: Complemental strand, 30745461 - 30745401
Alignment:
Q  339 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 399  Q
    ||||||| |||||||||| ||| |||||||||| |||||||| ||||||||||||||||||    
T  30745461 gcaattttttatgtaaatttctctgaatttcttttataaatccctataaattggacaattt 30745401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 339 - 399
Target Start/End: Complemental strand, 30766912 - 30766852
Alignment:
Q  339 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 399  Q
    ||||||| |||||||||| ||| |||||||||| |||||||| ||||||||||||||||||    
T  30766912 gcaattttttatgtaaatttctctgaatttcttttataaatccctataaattggacaattt 30766852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 467 - 518
Target Start/End: Original strand, 22683290 - 22683341
Alignment:
Q  467 tgtaccaatttggtcccgtatgttttgcttcgatactagttttagtcctttc 518  Q
    ||||||||||||||||| ||||||||||| || |||||||||||||||||||    
T  22683290 tgtaccaatttggtcccctatgttttgctccgttactagttttagtcctttc 22683341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 341 - 399
Target Start/End: Complemental strand, 23908400 - 23908342
Alignment:
Q  341 aatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 399  Q
    ||||| || |||||||  |||||||||||||||||||||| ||||||||||||||||||    
T  23908400 aattttttgtgtaaattcctatgaatttcttatataaatccctataaattggacaattt 23908342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 280 - 399
Target Start/End: Complemental strand, 49902644 - 49902525
Alignment:
Q  280 gggcggttctatggccaggcgaccccaggcattcgcttggactccggcccaannnnnnngcaatttcttatgtaaatctctatgaatttcttatataaat 379  Q
    ||||||||||| || | |||||| || |||| ||||| || |||||| ||||       |||||||||| |||||||| ||||||||||||||||||||     
T  49902644 gggcggttctaaggtccggcgactccgggcactcgctcgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 49902545  T
Q  380 ctctataaattggacaattt 399  Q
    | |||||||| || ||||||    
T  49902544 ccctataaatagggcaattt 49902525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 342 - 399
Target Start/End: Complemental strand, 42456686 - 42456629
Alignment:
Q  342 atttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 399  Q
    |||||||||||||||  |||||||||||||||||||| | ||||||||||| ||||||    
T  42456686 atttcttatgtaaattcctatgaatttcttatataaacccctataaattgggcaattt 42456629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 280 - 378
Target Start/End: Original strand, 42517246 - 42517344
Alignment:
Q  280 gggcggttctatggccaggcgaccccaggcattcgcttggactccggcccaannnnnnngcaatttcttatgtaaatctctatgaatttcttatataaa 378  Q
    ||||||||||| |||| ||||||||| |||| ||||  || |||||| ||||       |||||||||| |||||||| ||||||||||||||||||||    
T  42517246 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaa 42517344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 339 - 399
Target Start/End: Original strand, 7742790 - 7742850
Alignment:
Q  339 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 399  Q
    |||||||||| ||||||||  ||||||||||||||||||| | ||||||||||| ||||||    
T  7742790 gcaatttcttgtgtaaatccttatgaatttcttatataaacccctataaattgggcaattt 7742850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 341 - 399
Target Start/End: Complemental strand, 13132011 - 13131953
Alignment:
Q  341 aatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 399  Q
    ||||||||||||||||  || | ||||| ||||||||||| ||||||||||||||||||    
T  13132011 aatttcttatgtaaattcctctaaattttttatataaatcactataaattggacaattt 13131953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 341 - 399
Target Start/End: Original strand, 29149561 - 29149619
Alignment:
Q  341 aatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 399  Q
    ||||| || |||||||| |||||||||||||||||||| | ||||||||||| ||||||    
T  29149561 aattttttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaattt 29149619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 341 - 399
Target Start/End: Original strand, 44462491 - 44462549
Alignment:
Q  341 aatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 399  Q
    ||||| |||||||||||| | ||||||||||||| ||| ||||||||||| ||||||||    
T  44462491 aattttttatgtaaatctatctgaatttcttatacaaacctctataaattagacaattt 44462549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 339 - 399
Target Start/End: Complemental strand, 5558425 - 5558366
Alignment:
Q  339 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 399  Q
    ||||||||||||||||| || |  |||||||||||||||| | ||||||||||||||||||    
T  5558425 gcaatttcttatgtaaacct-tccgaatttcttatataaacccctataaattggacaattt 5558366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 339 - 399
Target Start/End: Original strand, 10907659 - 10907719
Alignment:
Q  339 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 399  Q
    ||||||||||||||||||  || ||||||||||||||||| | ||||||||  ||||||||    
T  10907659 gcaatttcttatgtaaattcctctgaatttcttatataaacccctataaatcagacaattt 10907719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 399
Target Start/End: Complemental strand, 5975104 - 5975045
Alignment:
Q  340 caatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 399  Q
    ||||||||| |||||||| ||| |||||||||||||||| | ||||||||| | ||||||    
T  5975104 caatttcttgtgtaaatccctaagaatttcttatataaacccctataaattaggcaattt 5975045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 467 - 518
Target Start/End: Complemental strand, 10824567 - 10824516
Alignment:
Q  467 tgtaccaatttggtcccgtatgttttgcttcgatactagttttagtcctttc 518  Q
    |||||||||||| |||| ||||||||||| || | |||||||||||||||||    
T  10824567 tgtaccaatttgatcccctatgttttgctccgttcctagttttagtcctttc 10824516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 467 - 518
Target Start/End: Complemental strand, 19056348 - 19056297
Alignment:
Q  467 tgtaccaatttggtcccgtatgttttgcttcgatactagttttagtcctttc 518  Q
    ||||||||||||||||| | |||||||||||| ||||||||| |||| ||||    
T  19056348 tgtaccaatttggtcccctgtgttttgcttcgttactagtttaagtcttttc 19056297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 339 - 399
Target Start/End: Complemental strand, 26835455 - 26835395
Alignment:
Q  339 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 399  Q
    ||||||| ||||||||||   |||||||||||||||||||   |||||||||| |||||||    
T  26835455 gcaatttattatgtaaattcatatgaatttcttatataaactcctataaattgaacaattt 26835395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 97; Significance: 2e-47; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 403 - 531
Target Start/End: Original strand, 13884491 - 13884619
Alignment:
Q  403 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatac 502  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||| |||||||||||||| |||    
T  13884491 cttattcaatcacccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggccccctatgttttgcttcgttac 13884590  T
Q  503 tagttttagtcctttcgggtagtttctct 531  Q
    ||||||||||| |||| ||||||||||||    
T  13884591 tagttttagtcttttctggtagtttctct 13884619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 397 - 570
Target Start/End: Original strand, 42126378 - 42126553
Alignment:
Q  397 tttagacttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgctt 496  Q
    ||||| |||||||||||||| ||||||||||||||||| |||||||||||||| | |  || |||||||||||| |||||||| ||| ||||||||||||    
T  42126378 tttaggcttattcaatcacccggtcccttaacttaattaattgtctcaatttgattctctaactataatttgtatcaatttggccccctatgttttgctt 42126477  T
Q  497 cgatactagttttagtcctttcgggtagtttctct--nnnnnnnngttaacttatgtaccaatttggtcccctatg 570  Q
    || ||||||||||||||||||| ||||||||||||          ||||||||||||| |||||||||||||||||    
T  42126478 cgctactagttttagtcctttctggtagtttctctacaaaaaaacgttaacttatgtatcaatttggtcccctatg 42126553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 403 - 530
Target Start/End: Complemental strand, 13884833 - 13884706
Alignment:
Q  403 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatac 502  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||  |||||||||||||| |||    
T  13884833 cttattcaatcacccggtcccttaacttaattgattgtctcaatttagtcccctaactataatttgtaccaatttggtcctctatgttttgcttcgttac 13884734  T
Q  503 tagttttagtcctttcgggtagtttctc 530  Q
    | |||||||||||||  | |||||||||    
T  13884733 tggttttagtcctttttgttagtttctc 13884706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 403 - 570
Target Start/End: Original strand, 29714544 - 29714712
Alignment:
Q  403 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatac 502  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||  | ||||| ||||||||||||||||||| ||| |||||||| | |||    
T  29714544 cttattcaatcacccggtcccttaacttaattgattgtctcaatttggtccccaaactatagtttgtaccaatttggtcccctatattttgctttgttac 29714643  T
Q  503 tagttttagtcctttcgggtagtttctct-nnnnnnnngttaacttatgtaccaatttggtcccctatg 570  Q
    ||| |||| || |||| | ||||||||||         |||||||||||||||||||||||| ||||||    
T  29714644 tagctttaatcatttctgttagtttctctcgtaaaaacgttaacttatgtaccaatttggtctcctatg 29714712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 397 - 531
Target Start/End: Complemental strand, 11868032 - 11867899
Alignment:
Q  397 tttagacttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgctt 496  Q
    ||||| |||||||||||||||||||| |||||||||||||||||||||||||||| || || |||||||||||| |||||||||||  ||||||||| ||    
T  11868032 tttaggcttattcaatcacctggtcc-ttaacttaattgattgtctcaatttggttccttaactataatttgtatcaatttggtcctctatgttttgatt 11867934  T
Q  497 cgatactagttttagtcctttcgggtagtttctct 531  Q
     |  |||||||||||||||||  | ||||||||||    
T  11867933 tgtcactagttttagtcctttatgttagtttctct 11867899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 410 - 531
Target Start/End: Complemental strand, 2554188 - 2554067
Alignment:
Q  410 aatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatactagtttt 509  Q
    |||||||| ||||||||||||||||||||||||||||||| |||| || ||||||||||| ||||||||||| | |||||||||||| | |||| |||||    
T  2554188 aatcacctagtcccttaacttaattgattgtctcaatttgatcccctaactataatttgttccaatttggtctcctatgttttgctttgttacttgtttt 2554089  T
Q  510 agtcctttcgggtagtttctct 531  Q
    ||| ||||| | ||||||||||    
T  2554088 agttctttctgttagtttctct 2554067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 411 - 513
Target Start/End: Complemental strand, 29714879 - 29714777
Alignment:
Q  411 atcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatactagtttta 510  Q
    |||||||||||||||||||||||||||||| | ||||||||||| || |||||||||||| |||||||||||  |||||||||||||  |||||||||||    
T  29714879 atcacctggtcccttaacttaattgattgttttaatttggtcccttaactataatttgtatcaatttggtcctctatgttttgcttcattactagtttta 29714780  T
Q  511 gtc 513  Q
    |||    
T  29714779 gtc 29714777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 403 - 531
Target Start/End: Complemental strand, 42126729 - 42126601
Alignment:
Q  403 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatac 502  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||| |||| || ||||||||||||||||||||||||  || ||||||||  |  ||    
T  42126729 cttattcaatcacccggtcccttaacttaattgattatctcaatttgatcccctaactataatttgtaccaatttggtcctctaagttttgctctgtcac 42126630  T
Q  503 tagttttagtcctttcgggtagtttctct 531  Q
    || |||||||| |||| | ||||||||||    
T  42126629 taattttagtcatttctgttagtttctct 42126601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 280 - 399
Target Start/End: Complemental strand, 42072604 - 42072485
Alignment:
Q  280 gggcggttctatggccaggcgaccccaggcattcgcttggactccggcccaannnnnnngcaatttcttatgtaaatctctatgaatttcttatataaat 379  Q
    |||||||||||||||| ||||||||| |||| ||||  || |||||| ||||       |||||||||| |||||||| ||||||||||||||||||||     
T  42072604 gggcggttctatggcccggcgaccccgggcactcgcccgggctccgggccaatttttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 42072505  T
Q  380 ctctataaattggacaattt 399  Q
    | ||||||||||||||||||    
T  42072504 ccctataaattggacaattt 42072485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 280 - 399
Target Start/End: Complemental strand, 35806970 - 35806851
Alignment:
Q  280 gggcggttctatggccaggcgaccccaggcattcgcttggactccggcccaannnnnnngcaatttcttatgtaaatctctatgaatttcttatataaat 379  Q
    ||||||||||| |||| ||||||||| |||| |||   || |||||| ||||       |||||||||| |||||||||||||||||||||||||||||     
T  35806970 gggcggttctaaggcccggcgaccccgggcactcggccgggctccgggccaaattttttgcaatttcttgtgtaaatctctatgaatttcttatataaac 35806871  T
Q  380 ctctataaattggacaattt 399  Q
    | ||||||||||| ||||||    
T  35806870 ccctataaattgggcaattt 35806851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 339 - 399
Target Start/End: Original strand, 16591386 - 16591446
Alignment:
Q  339 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 399  Q
    |||||||||||||||||| |||| |||||||||||||||||| ||||||||||| ||||||    
T  16591386 gcaatttcttatgtaaatttctaagaatttcttatataaatcactataaattgggcaattt 16591446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 339 - 399
Target Start/End: Complemental strand, 21525475 - 21525415
Alignment:
Q  339 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 399  Q
    |||||||||| |||||||| |||||||||||||||||||| | ||||||||||||||||||    
T  21525475 gcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattggacaattt 21525415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 340 - 392
Target Start/End: Complemental strand, 16523222 - 16523170
Alignment:
Q  340 caatttcttatgtaaatctctatgaatttcttatataaatctctataaattgg 392  Q
    ||||||| |||||||||| |||||||||||||||||||||| |||||||||||    
T  16523222 caatttcatatgtaaatccctatgaatttcttatataaatccctataaattgg 16523170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 447 - 529
Target Start/End: Complemental strand, 14996761 - 14996678
Alignment:
Q  447 ttggtcccatatctataatttgtaccaatttggtcccg-tatgttttgcttcgatactagttttagtcctttcgggtagtttct 529  Q
    |||||||| ||  ||||||||||||||||||| ||||  |||||||||||| | ||||||||||||||||||| | ||||||||    
T  14996761 ttggtcccctaattataatttgtaccaatttgatccccctatgttttgctttgttactagttttagtcctttctgttagtttct 14996678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 341 - 399
Target Start/End: Complemental strand, 22324711 - 22324653
Alignment:
Q  341 aatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 399  Q
    |||||||| |||||||| |||||||||||||||||||| | ||||||||||| ||||||    
T  22324711 aatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaattt 22324653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 339 - 392
Target Start/End: Complemental strand, 26021513 - 26021460
Alignment:
Q  339 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattgg 392  Q
    |||||||||| |||||||| |||||||||||||||||||| | |||||||||||    
T  26021513 gcaatttcttttgtaaatccctatgaatttcttatataaacccctataaattgg 26021460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 470 - 518
Target Start/End: Original strand, 2554002 - 2554050
Alignment:
Q  470 accaatttggtcccgtatgttttgcttcgatactagttttagtcctttc 518  Q
    |||||||||||||| |||||||| ||||| |||||||||||||||||||    
T  2554002 accaatttggtcccctatgttttacttcgttactagttttagtcctttc 2554050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 339 - 399
Target Start/End: Complemental strand, 24065390 - 24065330
Alignment:
Q  339 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 399  Q
    ||||||||| || |||||||||||||||||||||||||||   ||||||||||| ||||||    
T  24065390 gcaatttctcatataaatctctatgaatttcttatataaactcctataaattgggcaattt 24065330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 339 - 399
Target Start/End: Original strand, 33934380 - 33934440
Alignment:
Q  339 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 399  Q
    |||||||||| |||||||  |||||||||||||||||||| | ||||||||||| ||||||    
T  33934380 gcaatttcttttgtaaattcctatgaatttcttatataaacccctataaattgggcaattt 33934440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 339 - 399
Target Start/End: Complemental strand, 42013989 - 42013929
Alignment:
Q  339 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 399  Q
    |||||||||| |||||||| ||||||||||||||||||||   ||||||||||| ||||||    
T  42013989 gcaatttcttgtgtaaatccctatgaatttcttatataaactcctataaattgggcaattt 42013929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 467 - 518
Target Start/End: Original strand, 14996608 - 14996659
Alignment:
Q  467 tgtaccaatttggtcccgtatgttttgcttcgatactagttttagtcctttc 518  Q
    ||||| ||||||||||| |||||||||||||| |||||||||||||| ||||    
T  14996608 tgtactaatttggtcccctatgttttgcttcgttactagttttagtcttttc 14996659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 403 - 498
Target Start/End: Original strand, 43416265 - 43416360
Alignment:
Q  403 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcg 498  Q
    ||||||||||||   |||| |||||||||||||||||||| |||||  |||| || |||||||||||| ||||||  || | ||||||||| ||||    
T  43416265 cttattcaatcattcggtctcttaacttaattgattgtcttaatttaatcccctaactataatttgtatcaatttaatctcctatgttttgtttcg 43416360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 339 - 392
Target Start/End: Original strand, 16818984 - 16819037
Alignment:
Q  339 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattgg 392  Q
    |||||||||| ||||||||||  ||||||||||||||||| | |||||||||||    
T  16818984 gcaatttcttttgtaaatctccttgaatttcttatataaacccctataaattgg 16819037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 339 - 399
Target Start/End: Complemental strand, 19334900 - 19334840
Alignment:
Q  339 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 399  Q
    |||||||||||| |||||   ||||||||| ||||||||| ||||||||||| ||||||||    
T  19334900 gcaatttcttatataaattcttatgaattttttatataaacctctataaattagacaattt 19334840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 467 - 518
Target Start/End: Original strand, 29714691 - 29714742
Alignment:
Q  467 tgtaccaatttggtcccgtatgttttgcttcgatactagttttagtcctttc 518  Q
    ||||||||||||||| | |||||||| || || |||||||||||||||||||    
T  29714691 tgtaccaatttggtctcctatgttttactccgttactagttttagtcctttc 29714742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 419 - 495
Target Start/End: Complemental strand, 26746067 - 26745991
Alignment:
Q  419 gtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgct 495  Q
    ||||||||||||| ||| |||| |||| |||||||| ||  ||||||||||||||| || ||||  || ||||||||    
T  26746067 gtcccttaacttatttgtttgtatcaaattggtcccctaaatataatttgtaccaaattcgtcctctaagttttgct 26745991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 340 - 392
Target Start/End: Original strand, 43282863 - 43282915
Alignment:
Q  340 caatttcttatgtaaatctctatgaatttcttatataaatctctataaattgg 392  Q
    |||||||||||||||||   | ||||||| ||||||||||| |||||||||||    
T  43282863 caatttcttatgtaaattcttctgaatttattatataaatccctataaattgg 43282915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 94; Significance: 1e-45; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 403 - 568
Target Start/End: Original strand, 2916380 - 2916545
Alignment:
Q  403 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatac 502  Q
    |||||||||||||| | || ||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||| |||||||||||| | |||    
T  2916380 cttattcaatcacccgatctcttaacttaattgattgtctcaatttgatcccctaactataatttgtaccaatttggtcccctatgttttgctttgttac 2916479  T
Q  503 tagttttagtcctttcgggtagtttctctnnnnnnnngttaacttatgtaccaatttggtccccta 568  Q
    |||||||| ||||||| | ||||||||||        |||||||||||||||||||||||||||||    
T  2916480 tagttttaatcctttctgttagtttctctcaaaaaacgttaacttatgtaccaatttggtccccta 2916545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 403 - 570
Target Start/End: Original strand, 16973066 - 16973234
Alignment:
Q  403 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatac 502  Q
    |||||||||||||| ||||||||||||||||||||||||| ||||||||||| || ||||| ||||||||||||||||||| |||||||||||||| |||    
T  16973066 cttattcaatcacccggtcccttaacttaattgattgtcttaatttggtcccctaactatagtttgtaccaatttggtcccctatgttttgcttcgttac 16973165  T
Q  503 tagttttagtcctttcgggtagtttctct-nnnnnnnngttaacttatgtaccaatttggtcccctatg 570  Q
    |||||||| | ||||| | ||||||||||         |||||||||||||||||||||||||||||||    
T  16973166 tagttttaattctttctgttagtttctctcataaaaacgttaacttatgtaccaatttggtcccctatg 16973234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 403 - 531
Target Start/End: Complemental strand, 44594583 - 44594455
Alignment:
Q  403 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatac 502  Q
    |||||||||||||| ||||| |||| |||||||||||||||||||||||||| || |||||||||||| |||||||||||  |||||||||||||| |||    
T  44594583 cttattcaatcacccggtcctttaatttaattgattgtctcaatttggtcccctaactataatttgtatcaatttggtccattatgttttgcttcgttac 44594484  T
Q  503 tagttttagtcctttcgggtagtttctct 531  Q
    ||||||||||| |||| ||||||||||||    
T  44594483 tagttttagtcatttctggtagtttctct 44594455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 404 - 570
Target Start/End: Complemental strand, 38982901 - 38982734
Alignment:
Q  404 ttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatact 503  Q
    ||||||| |||||  |||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||||| || |||||||||||||  ||||    
T  38982901 ttattcagtcaccaagtcccttaacttaattgattgtctcaatttggtcccttaactataatttgtatcaatttggttccttatgttttgcttcattact 38982802  T
Q  504 agttttagtcctttcgggtagtttctct-nnnnnnnngttaacttatgtaccaatttggtcccctatg 570  Q
    |||||||||| |||| ||||||||||||         |||||||||||||||||||||||||| ||||    
T  38982801 agttttagtcatttctggtagtttctctcaaaaaaacgttaacttatgtaccaatttggtcccttatg 38982734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 403 - 531
Target Start/End: Complemental strand, 16973409 - 16973281
Alignment:
Q  403 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatac 502  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||  |||||||||||  ||||||||||| |  |||    
T  16973409 cttattcaatcacatggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtgtcaatttggtcctctatgttttgctccattac 16973310  T
Q  503 tagttttagtcctttcgggtagtttctct 531  Q
    ||||||||||| |||| |  |||||||||    
T  16973309 tagttttagtcatttctgtcagtttctct 16973281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 403 - 531
Target Start/End: Original strand, 40987659 - 40987787
Alignment:
Q  403 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatac 502  Q
    |||||| ||||| | |||||||||||||||||||||||||||||||||| || || ||||||||||||||||||| ||| | ||||||||| || | |||    
T  40987659 cttatttaatcatccggtcccttaacttaattgattgtctcaatttggttccctaactataatttgtaccaatttagtctcatatgttttgatttgttac 40987758  T
Q  503 tagttttagtcctttcgggtagtttctct 531  Q
    ||||||||||| |||  | ||||||||||    
T  40987759 tagttttagtcttttatgttagtttctct 40987787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 403 - 518
Target Start/End: Original strand, 44594250 - 44594366
Alignment:
Q  403 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggt-cccatatctataatttgtaccaatttggtcccgtatgttttgcttcgata 501  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||  || || |||||||||||| |||||||||||  |||||||||||  | ||    
T  44594250 cttattcaatcacccggtcccttaacttaattgattgtctcaatttggtgtccctaactataatttgtatcaatttggtcctctatgttttgctctgtta 44594349  T
Q  502 ctagttttagtcctttc 518  Q
    ||||||||||| |||||    
T  44594350 ctagttttagttctttc 44594366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 403 - 518
Target Start/End: Original strand, 38982559 - 38982674
Alignment:
Q  403 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatac 502  Q
    |||| ||||||||| | ||| |||||||||||||||||||||||||||  || || |||||||||||||||||||||||   |||||||||||||| | |    
T  38982559 cttaatcaatcacccgatcctttaacttaattgattgtctcaatttggctccctaactataatttgtaccaatttggtcatttatgttttgcttcgttgc 38982658  T
Q  503 tagttttagtcctttc 518  Q
    ||||||||||||||||    
T  38982659 tagttttagtcctttc 38982674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 403 - 518
Target Start/End: Complemental strand, 11533790 - 11533674
Alignment:
Q  403 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggt-cccgtatgttttgcttcgata 501  Q
    |||||||||||| | |||| |||||||||| |||||||||||||||||||||  | |||||||||||||||||||||| ||| ||||||||||||   ||    
T  11533790 cttattcaatcatcaggtctcttaacttaagtgattgtctcaatttggtcccccaactataatttgtaccaatttggtccccctatgttttgctttatta 11533691  T
Q  502 ctagttttagtcctttc 518  Q
    |||||||||||| ||||    
T  11533690 ctagttttagtcatttc 11533674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 404 - 531
Target Start/End: Complemental strand, 2916721 - 2916594
Alignment:
Q  404 ttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatact 503  Q
    ||||||||||| ||  | ||||||||||||||||||||||||||||||||| || |||| ||||||||||| ||| |||  ||| |||||||  | ||||    
T  2916721 ttattcaatcatctaattccttaacttaattgattgtctcaatttggtcccctaactattatttgtaccaacttgatcctctatattttgctctgttact 2916622  T
Q  504 agttttagtcctttcgggtagtttctct 531  Q
    |||||| |||||||| | ||||||||||    
T  2916621 agttttggtcctttctgttagtttctct 2916594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 426 - 570
Target Start/End: Complemental strand, 24126245 - 24126107
Alignment:
Q  426 aacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatactagttttagtcctttcgggtagt 525  Q
    ||||||||||||| ||||||||||||| | || ||||||||||||||||||||||||| |||||||||||      ||||||||||||||||  | ||||    
T  24126245 aacttaattgattttctcaatttggtctcctaactataatttgtaccaatttggtcccttatgttttgct------ctagttttagtcctttatgttagt 24126152  T
Q  526 ttctctnnnnnnnngttaacttatgtaccaatttggtcccctatg 570  Q
    ||||||         |||||||||||| ||||||||||| |||||    
T  24126151 ttctctaaaaaaacattaacttatgtatcaatttggtccactatg 24126107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 403 - 531
Target Start/End: Complemental strand, 13559646 - 13559519
Alignment:
Q  403 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatac 502  Q
    |||||||||||| | ||||||||||||||||||||||| |||||||||| || || |||||||||||| ||| |||||||| | || ||||||  | |||    
T  13559646 cttattcaatcatccggtcccttaacttaattgattgtttcaatttggttccctaactataatttgtatcaa-ttggtcccttgtgctttgctctgttac 13559548  T
Q  503 tagttttagtcctttcgggtagtttctct 531  Q
    ||| ||||||| |||  | ||||||||||    
T  13559547 tagatttagtcatttatgttagtttctct 13559519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 340 - 399
Target Start/End: Original strand, 6318470 - 6318529
Alignment:
Q  340 caatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 399  Q
    |||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||    
T  6318470 caatttcttatgtaaatccctatgaatttcttatataaatccctataaattgggcaattt 6318529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 426 - 531
Target Start/End: Complemental strand, 24125975 - 24125876
Alignment:
Q  426 aacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatactagttttagtcctttcgggtagt 525  Q
    ||||||||| ||| ||||||||||||| | || ||||||||||||||||||||||||| |||||||||||      ||||||||||| ||||| | ||||    
T  24125975 aacttaattaattttctcaatttggtctcctaactataatttgtaccaatttggtcccttatgttttgct------ctagttttagttctttctgttagt 24125882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 280 - 399
Target Start/End: Complemental strand, 29846618 - 29846499
Alignment:
Q  280 gggcggttctatggccaggcgaccccaggcattcgcttggactccggcccaannnnnnngcaatttcttatgtaaatctctatgaatttcttatataaat 379  Q
    ||||||||||| |||| | ||||||| |||| ||||  || |||||| ||||       |||||||||| |||||||| ||||||||||||||||||||     
T  29846618 gggcggttctaaggcccgacgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 29846519  T
Q  380 ctctataaattggacaattt 399  Q
    | ||||||||||||||||||    
T  29846518 ccctataaattggacaattt 29846499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 280 - 399
Target Start/End: Original strand, 42769710 - 42769829
Alignment:
Q  280 gggcggttctatggccaggcgaccccaggcattcgcttggactccggcccaannnnnnngcaatttcttatgtaaatctctatgaatttcttatataaat 379  Q
    ||||||||||| |||| ||||||||| |||| ||||  || |||||| ||||       |||||||||| |||||||| ||||||||||||||||||||     
T  42769710 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 42769809  T
Q  380 ctctataaattggacaattt 399  Q
    | ||||||||||| ||||||    
T  42769810 ccctataaattgggcaattt 42769829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 278 - 399
Target Start/End: Complemental strand, 3956750 - 3956629
Alignment:
Q  278 atgggcggttctatggccaggcgaccccaggcattcgcttggactccggcccaannnnnnngcaatttcttatgtaaatctctatgaatttcttatataa 377  Q
    |||||||||||||||||| || |||||| |||| ||||  || |||||||||||        |||||| ||||||||||| |||||||||| ||||||||    
T  3956750 atgggcggttctatggcccggtgaccccgggcactcgcccgggctccggcccaaaaaattttcaattttttatgtaaatccctatgaatttattatataa 3956651  T
Q  378 atctctataaattggacaattt 399  Q
    | | || |||||||||||||||    
T  3956650 acccctgtaaattggacaattt 3956629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 407 - 495
Target Start/End: Complemental strand, 40987987 - 40987899
Alignment:
Q  407 ttcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgct 495  Q
    |||||||||| |||| |||||||||||| |||||||||||||| |||  || ||||||||||||  ||||||||||| ||| |||||||    
T  40987987 ttcaatcacccggtctcttaacttaattaattgtctcaatttgatcctctaactataatttgtattaatttggtcccctatattttgct 40987899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 280 - 399
Target Start/End: Original strand, 14186390 - 14186509
Alignment:
Q  280 gggcggttctatggccaggcgaccccaggcattcgcttggactccggcccaannnnnnngcaatttcttatgtaaatctctatgaatttcttatataaat 379  Q
    ||||||||||| |||| |||||||||||||| ||||  |  |||||| ||||       | |||||||| |||||||| ||||||||||||||||||||     
T  14186390 gggcggttctaaggcccggcgaccccaggcactcgcccgagctccgggccaaattttttgtaatttcttgtgtaaatccctatgaatttcttatataaac 14186489  T
Q  380 ctctataaattggacaattt 399  Q
    | ||||||||||| ||||||    
T  14186490 ccctataaattgggcaattt 14186509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 403 - 468
Target Start/End: Original strand, 24125672 - 24125737
Alignment:
Q  403 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttg 468  Q
    |||||||| ||| | |||||||||||||||||||||||||||||||| |||| || ||||||||||    
T  24125672 cttattcactcaaccggtcccttaacttaattgattgtctcaatttgatcccctaactataatttg 24125737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 339 - 399
Target Start/End: Original strand, 14942055 - 14942115
Alignment:
Q  339 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 399  Q
    |||||||||| |||||||| |||||||||||||||||||| | ||||||||||| ||||||    
T  14942055 gcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaattt 14942115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 339 - 399
Target Start/End: Original strand, 40277299 - 40277359
Alignment:
Q  339 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 399  Q
    ||||||| ||||||||||| |||| ||||||||||||||||| ||||||||||| ||||||    
T  40277299 gcaattttttatgtaaatccctataaatttcttatataaatccctataaattgggcaattt 40277359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 339 - 399
Target Start/End: Original strand, 41674717 - 41674777
Alignment:
Q  339 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 399  Q
    |||||||||||||||||||||| ||||||| ||||||||| |  |||||||||||||||||    
T  41674717 gcaatttcttatgtaaatctctctgaattttttatataaacccttataaattggacaattt 41674777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 467 - 518
Target Start/End: Original strand, 16973213 - 16973264
Alignment:
Q  467 tgtaccaatttggtcccgtatgttttgcttcgatactagttttagtcctttc 518  Q
    ||||||||||||||||| ||||||||||| || |||||||||||||||||||    
T  16973213 tgtaccaatttggtcccctatgttttgctccgttactagttttagtcctttc 16973264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 340 - 399
Target Start/End: Complemental strand, 33009789 - 33009730
Alignment:
Q  340 caatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 399  Q
    ||||||||||| |||||| |||||||||| |||||||||||  |||||||||||||||||    
T  33009789 caatttcttatataaatccctatgaatttgttatataaatccttataaattggacaattt 33009730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 341 - 399
Target Start/End: Complemental strand, 2888156 - 2888098
Alignment:
Q  341 aatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 399  Q
    |||||||||||||||||||||||||||| |||||||||   |||||||||| |||||||    
T  2888156 aatttcttatgtaaatctctatgaattttttatataaactcctataaattgaacaattt 2888098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 339 - 399
Target Start/End: Complemental strand, 19181665 - 19181605
Alignment:
Q  339 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 399  Q
    |||||||||| |||||||  |||||||||||||||||||| | ||||||||||| ||||||    
T  19181665 gcaatttcttgtgtaaattcctatgaatttcttatataaacccctataaattgggcaattt 19181605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 467 - 518
Target Start/End: Complemental strand, 38982755 - 38982704
Alignment:
Q  467 tgtaccaatttggtcccgtatgttttgcttcgatactagttttagtcctttc 518  Q
    ||||||||||||||||| ||||||||||| || | || ||||||||||||||    
T  38982755 tgtaccaatttggtcccttatgttttgctccgttcctggttttagtcctttc 38982704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 467 - 518
Target Start/End: Complemental strand, 44594436 - 44594385
Alignment:
Q  467 tgtaccaatttggtcccgtatgttttgcttcgatactagttttagtcctttc 518  Q
    ||||||||||| ||||| ||||||||||| || | |||||||||||||||||    
T  44594436 tgtaccaatttagtcccctatgttttgctccgttcctagttttagtcctttc 44594385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 339 - 399
Target Start/End: Original strand, 14539715 - 14539775
Alignment:
Q  339 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 399  Q
    |||||||||||||||| |  || ||||||||||||||||||  ||||||||| | ||||||    
T  14539715 gcaatttcttatgtaatttcctctgaatttcttatataaattcctataaattaggcaattt 14539775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 92; Significance: 2e-44; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 400 - 570
Target Start/End: Complemental strand, 46003596 - 46003425
Alignment:
Q  400 agacttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcga 499  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||||||| |||| | |||||||||||      
T  46003596 agacttatttaatcatctggtcccttaacttaattgattgtctcaatttggtcccctaactaaaatttgtaccaatttgatcccctttgttttgcttcat 46003497  T
Q  500 tactagttttagtcctttcgggtagtttctct-nnnnnnnngttaacttatgtaccaatttggtcccctatg 570  Q
    ||||||||||||||||||| ||||||||||||         ||||||||||||||||||||||||| |||||    
T  46003496 tactagttttagtcctttctggtagtttctctaaaaaaaacgttaacttatgtaccaatttggtcctctatg 46003425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 403 - 531
Target Start/End: Original strand, 40244627 - 40244756
Alignment:
Q  403 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttgg-tcccgtatgttttgcttcgata 501  Q
    |||||||||||| | | ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |||| |||||||||||| | ||    
T  40244627 cttattcaatcatccgatcccttaacttaattgattgtctcaatttggtcccttaactataatttgtaccaatttggttcccctatgttttgctttgtta 40244726  T
Q  502 ctagttttagtcctttcgggtagtttctct 531  Q
    |||||||||||| |||| | ||||||||||    
T  40244727 ctagttttagtcatttctgttagtttctct 40244756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 403 - 531
Target Start/End: Complemental strand, 51663595 - 51663467
Alignment:
Q  403 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatac 502  Q
    |||||||||||| | ||||||||||||||||||||||||||||||||||||| || |||||||||||| |||||||||||  |||||||||||  | |||    
T  51663595 cttattcaatcatccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtagcaatttggtcctctatgttttgctatgttac 51663496  T
Q  503 tagttttagtcctttcgggtagtttctct 531  Q
    ||||||||||| |||| | ||||||||||    
T  51663495 tagttttagtcatttctgttagtttctct 51663467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 403 - 570
Target Start/End: Original strand, 51663252 - 51663420
Alignment:
Q  403 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatac 502  Q
    |||||| ||||||| |||| |||||||||||||||||| | ||| ||||||  || |||||||||||| |||||| ||||| |||||||||||||| |||    
T  51663252 cttatttaatcacccggtctcttaacttaattgattgttttaatatggtccactaactataatttgtatcaatttagtcccctatgttttgcttcgttac 51663351  T
Q  503 tagttttagtcctttcgggtagtttctct-nnnnnnnngttaacttatgtaccaatttggtcccctatg 570  Q
    ||||||||||| |||| ||||||||||||         |||||||||||||| ||||||||||||||||    
T  51663352 tagttttagtcatttctggtagtttctctcaaaaaaacgttaacttatgtactaatttggtcccctatg 51663420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 405 - 570
Target Start/End: Original strand, 20537930 - 20538097
Alignment:
Q  405 tattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatacta 504  Q
    |||| ||||| ||||||||||||||||||||||  | |||||||| |||| || ||||||||||| ||||||||||||| |||||||||||||  |||||    
T  20537930 tattgaatcatctggtcccttaacttaattgatattatcaatttgatcccctaactataatttgttccaatttggtcccctatgttttgcttcattacta 20538029  T
Q  505 gttttagtcctttcgggtagtttctct--nnnnnnnngttaacttatgtaccaatttggtcccctatg 570  Q
    ||||||||||||||   ||||||||||          ||||| |||||||||||||||||||||||||    
T  20538030 gttttagtcctttctattagtttctctaaaaaaaaacgttaatttatgtaccaatttggtcccctatg 20538097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 404 - 512
Target Start/End: Complemental strand, 40364301 - 40364194
Alignment:
Q  404 ttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatact 503  Q
    |||||||||||| |||||||||||||||||||||||| ||||||||||| | || |||||||||||||||||||| |||| ||||||||| | || ||||    
T  40364301 ttattcaatcacttggtcccttaacttaattgattgtttcaatttggtctcctaactataatttgtaccaatttgatccc-tatgttttgttccgttact 40364203  T
Q  504 agttttagt 512  Q
    |||||||||    
T  40364202 agttttagt 40364194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 403 - 531
Target Start/End: Complemental strand, 20538279 - 20538151
Alignment:
Q  403 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatac 502  Q
    |||||||||||||| ||||| |||| ||||||||||||||||||||| |||| || |||||||||||| |||||| ||    ||||||||||| || |||    
T  20538279 cttattcaatcacccggtcctttaatttaattgattgtctcaatttgatcccctaactataatttgtatcaatttagttatctatgttttgctccgttac 20538180  T
Q  503 tagttttagtcctttcgggtagtttctct 531  Q
    ||||||||||| |||| | ||||||||||    
T  20538179 tagttttagtcatttctgttagtttctct 20538151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 404 - 531
Target Start/End: Original strand, 46003251 - 46003378
Alignment:
Q  404 ttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatact 503  Q
    ||||||||||||| ||||| ||||||||||||||||| | ||||||||||| || |||||||||||| |||||||||||  |||||| || |  | |||     
T  46003251 ttattcaatcacccggtcctttaacttaattgattgttttaatttggtcccctaactataatttgtatcaatttggtcctctatgttctgttctgttaca 46003350  T
Q  504 agttttagtcctttcgggtagtttctct 531  Q
    ||||||||||||||  | ||||||||||    
T  46003351 agttttagtcctttttgttagtttctct 46003378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 403 - 531
Target Start/End: Original strand, 40364043 - 40364171
Alignment:
Q  403 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatac 502  Q
    ||||||| ||||||   ||||||||||||||||||| ||| ||||||||||||||  ||||||||||| ||||||| |||| | | ||||||| || ||     
T  40364043 cttattcgatcacccaatcccttaacttaattgattatcttaatttggtcccataattataatttgtatcaatttgatcccctgtattttgctccgttat 40364142  T
Q  503 tagttttagtcctttcgggtagtttctct 531  Q
    ||||||||||| |||  | ||||||||||    
T  40364143 tagttttagtcatttttgttagtttctct 40364171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 340 - 399
Target Start/End: Complemental strand, 3178819 - 3178760
Alignment:
Q  340 caatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 399  Q
    ||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||    
T  3178819 caatttcttgtgtaaatccctatgaatttcttatataaatctctataaattgggcaattt 3178760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 340 - 399
Target Start/End: Complemental strand, 13856215 - 13856156
Alignment:
Q  340 caatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 399  Q
    ||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  13856215 caatttcttgtgtaaatccctatgaatttcttatataaatccctataaattggacaattt 13856156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 339 - 399
Target Start/End: Original strand, 10839391 - 10839451
Alignment:
Q  339 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 399  Q
    |||||||||||||||||| ||| ||||||||||||||||| ||||||||||||| ||||||    
T  10839391 gcaatttcttatgtaaatttctctgaatttcttatataaacctctataaattgggcaattt 10839451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 403 - 463
Target Start/End: Complemental strand, 40244933 - 40244873
Alignment:
Q  403 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctata 463  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||||||| || |||||    
T  40244933 cttattcaatcaccccgtcccttaacttaattgattgtctcaatttggtcccctaactata 40244873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 340 - 399
Target Start/End: Complemental strand, 5391573 - 5391514
Alignment:
Q  340 caatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 399  Q
    ||||||||| |||||||| |||||||||||||||||||| | ||||||||||||||||||    
T  5391573 caatttcttgtgtaaatccctatgaatttcttatataaacccctataaattggacaattt 5391514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 280 - 399
Target Start/End: Original strand, 8950456 - 8950575
Alignment:
Q  280 gggcggttctatggccaggcgaccccaggcattcgcttggactccggcccaannnnnnngcaatttcttatgtaaatctctatgaatttcttatataaat 379  Q
    ||||||||||| |||| ||||||||| |||| ||||  || ||| || ||||       |||||||||| |||||||  |||||||||||||||||||||    
T  8950456 gggcggttctaaggcctggcgaccccgggcactcgcccgggctctgggccaaattttttgcaatttcttgtgtaaattcctatgaatttcttatataaat 8950555  T
Q  380 ctctataaattggacaattt 399  Q
    | ||||||||||| ||||||    
T  8950556 ccctataaattgggcaattt 8950575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 341 - 399
Target Start/End: Original strand, 19649385 - 19649443
Alignment:
Q  341 aatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 399  Q
    ||||||||||||||||| |||||||||||||||||||| |  |||||||||||||||||    
T  19649385 aatttcttatgtaaatcgctatgaatttcttatataaacccttataaattggacaattt 19649443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 280 - 399
Target Start/End: Complemental strand, 21853373 - 21853254
Alignment:
Q  280 gggcggttctatggccaggcgaccccaggcattcgcttggactccggcccaannnnnnngcaatttcttatgtaaatctctatgaatttcttatataaat 379  Q
    ||||||||||| |||| ||||||||| |||| |||   || |||||| ||||       |||||||||| |||||||| ||||||||||||||||||||     
T  21853373 gggcggttctaaggcccggcgaccccgggcactcggccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaaa 21853274  T
Q  380 ctctataaattggacaattt 399  Q
    | ||||||||||| ||||||    
T  21853273 ccctataaattgggcaattt 21853254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 339 - 400
Target Start/End: Original strand, 6280370 - 6280431
Alignment:
Q  339 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattta 400  Q
    |||||||||||||||||| ||  ||||||||||||||||| ||||||||||| |||||||||    
T  6280370 gcaatttcttatgtaaatttccctgaatttcttatataaacctctataaatttgacaattta 6280431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 275 - 399
Target Start/End: Original strand, 44994915 - 44995040
Alignment:
Q  275 tctatgggcggttctatggccaggcgaccccaggcattcgcttggactccggcccaannnnnnngcaatttcttatgtaaatctctatgaatttcttata 374  Q
    |||| ||||||||||| |||| ||||||||| || | ||||| || |||||| ||||       |||||||||| |||||||| ||||||||||||||||    
T  44994915 tctaggggcggttctaaggcccggcgaccccgggtactcgctcgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttata 44995014  T
Q  375 taaatctc-tataaattggacaattt 399  Q
    |||| | | |||||||||| ||||||    
T  44995015 taaaccccttataaattgggcaattt 44995040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 341 - 392
Target Start/End: Complemental strand, 20382634 - 20382583
Alignment:
Q  341 aatttcttatgtaaatctctatgaatttcttatataaatctctataaattgg 392  Q
    ||||||||||||||||| |||||||||||||||||||| | |||||||||||    
T  20382634 aatttcttatgtaaatccctatgaatttcttatataaacccctataaattgg 20382583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 467 - 518
Target Start/End: Complemental strand, 46003446 - 46003395
Alignment:
Q  467 tgtaccaatttggtcccgtatgttttgcttcgatactagttttagtcctttc 518  Q
    ||||||||||||||||  |||||||||||||| |||||||||||||||||||    
T  46003446 tgtaccaatttggtcctctatgttttgcttcgttactagttttagtcctttc 46003395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 339 - 399
Target Start/End: Complemental strand, 1781879 - 1781819
Alignment:
Q  339 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 399  Q
    ||||||||||||||||||| || ||||||||||||||||| | | ||||||||| ||||||    
T  1781879 gcaatttcttatgtaaatccctctgaatttcttatataaaccccaataaattgggcaattt 1781819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 339 - 399
Target Start/End: Complemental strand, 36539749 - 36539689
Alignment:
Q  339 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 399  Q
    ||||||||||||||||||| |||| ||||||||||||||  | ||||||||||| ||||||    
T  36539749 gcaatttcttatgtaaatccctataaatttcttatataatcccctataaattgggcaattt 36539689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 339 - 399
Target Start/End: Original strand, 40845928 - 40845988
Alignment:
Q  339 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 399  Q
    ||||||| || |||||||| |||||||||||||||||||| | ||||||||||| ||||||    
T  40845928 gcaattttttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaattt 40845988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 339 - 399
Target Start/End: Complemental strand, 54547021 - 54546961
Alignment:
Q  339 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 399  Q
    ||||||||||| ||||||  || ||||||||||||||||| | ||||||||||||||||||    
T  54547021 gcaatttcttacgtaaattcctttgaatttcttatataaacccctataaattggacaattt 54546961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 341 - 399
Target Start/End: Original strand, 19644340 - 19644398
Alignment:
Q  341 aatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 399  Q
    ||||| ||||||||||  |||||||||| |||||||||||| ||||||||| |||||||    
T  19644340 aattttttatgtaaattgctatgaattttttatataaatctttataaattgaacaattt 19644398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 341 - 399
Target Start/End: Original strand, 23467507 - 23467565
Alignment:
Q  341 aatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 399  Q
    ||||| || |||||||| |||||||||||||||||||| | ||||||||||| ||||||    
T  23467507 aattttttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaattt 23467565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 339 - 392
Target Start/End: Complemental strand, 27642777 - 27642724
Alignment:
Q  339 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattgg 392  Q
    |||||||||||||||||||  | |||||||||||||||||||  ||||||||||    
T  27642777 gcaatttcttatgtaaatccttttgaatttcttatataaatccttataaattgg 27642724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 339 - 399
Target Start/End: Complemental strand, 32352964 - 32352904
Alignment:
Q  339 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 399  Q
    |||||||||| | |||||| |||||||||||||||||||| | ||||||||| | ||||||    
T  32352964 gcaatttcttgtataaatccctatgaatttcttatataaacccctataaattaggcaattt 32352904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 339 - 399
Target Start/End: Complemental strand, 39352310 - 39352251
Alignment:
Q  339 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 399  Q
    |||||||||||| ||||| ||| | |||||||||||||||||||||||||||  |||||||    
T  39352310 gcaatttcttat-taaatttctctaaatttcttatataaatctctataaatttaacaattt 39352251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 339 - 399
Target Start/End: Original strand, 43347347 - 43347407
Alignment:
Q  339 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 399  Q
    ||||||||||||||||||  || ||||||||||||||||| | ||| ||||||| ||||||    
T  43347347 gcaatttcttatgtaaattcctctgaatttcttatataaacccctacaaattgggcaattt 43347407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 467 - 513
Target Start/End: Original strand, 20538076 - 20538122
Alignment:
Q  467 tgtaccaatttggtcccgtatgttttgcttcgatactagttttagtc 513  Q
    ||||||||||||||||| |||||||||||| | || |||||||||||    
T  20538076 tgtaccaatttggtcccctatgttttgctttgttattagttttagtc 20538122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 400
Target Start/End: Complemental strand, 33103860 - 33103799
Alignment:
Q  339 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattta 400  Q
    ||||||||||||||||||  |  | |||||||||||||| || |||||||||||| ||||||    
T  33103860 gcaatttcttatgtaaattcccttaaatttcttatataagtccctataaattggataattta 33103799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 359 - 399
Target Start/End: Complemental strand, 47889823 - 47889783
Alignment:
Q  359 ctatgaatttcttatataaatctctataaattggacaattt 399  Q
    |||||||||||||||||||||  ||||||||||| ||||||    
T  47889823 ctatgaatttcttatataaattcctataaattgggcaattt 47889783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 90; Significance: 3e-43; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 397 - 570
Target Start/End: Original strand, 39161284 - 39161457
Alignment:
Q  397 tttagacttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgctt 496  Q
    ||||| |||||||||||||| | ||| ||||||||||||| ||||| ||||||||||| || ||||||||||||||||||||||||| ||||||||||||    
T  39161284 tttaggcttattcaatcacccgatcctttaacttaattgaatgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgctt 39161383  T
Q  497 cgatactagttttagtcctttcgggtagtttctctnnnnnnnngttaacttatgtaccaatttggtcccctatg 570  Q
    || ||||||||||||||||||| |  |||||||||         ||||||||||||||||||||||||| ||||    
T  39161384 cgttactagttttagtcctttctgaaagtttctctcaaaaaacattaacttatgtaccaatttggtcccatatg 39161457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 403 - 518
Target Start/End: Complemental strand, 50509473 - 50509358
Alignment:
Q  403 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatac 502  Q
    |||||||||||| ||| ||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||| |||||||||||| | |||    
T  50509473 cttattcaatcatctgatcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgctttgttac 50509374  T
Q  503 tagttttagtcctttc 518  Q
    || |||||||| ||||    
T  50509373 taattttagtcttttc 50509358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 398 - 531
Target Start/End: Complemental strand, 55173603 - 55173470
Alignment:
Q  398 ttagacttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttc 497  Q
    |||| |||||||||||||| |||||||||||||||||||||||||||||||| || | || ||||||||||||||||||||||||| |||| |||||||     
T  55173603 ttaggcttattcaatcacccggtcccttaacttaattgattgtctcaatttgatctcctaactataatttgtaccaatttggtcccctatgctttgcttt 55173504  T
Q  498 gatactagttttagtcctttcgggtagtttctct 531  Q
    | |||| ||||||||| |||  | ||||||||||    
T  55173503 gttacttgttttagtcttttttgctagtttctct 55173470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 403 - 517
Target Start/End: Original strand, 47096802 - 47096914
Alignment:
Q  403 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatac 502  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||||||||| || | ||||||||||||||||| | ||| |||||||||||||| |||    
T  47096802 cttattcaatcacctgatcccttaacttaattgattatctcaatttggtcccctaac-ataatttgtaccaattt-gccccctatgttttgcttcgttac 47096899  T
Q  503 tagttttagtccttt 517  Q
    | |||||||||||||    
T  47096900 ttgttttagtccttt 47096914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 403 - 531
Target Start/End: Complemental strand, 39161632 - 39161504
Alignment:
Q  403 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatac 502  Q
    ||||||||| || | ||| ||||||||||||||||||| | ||||||||||| || ||||||||||||||||||| ||||  ||||||||||| || ||     
T  39161632 cttattcaaccatccggttccttaacttaattgattgttttaatttggtcccctaactataatttgtaccaatttagtcctctatgttttgctccgttat 39161533  T
Q  503 tagttttagtcctttcgggtagtttctct 531  Q
    |||||||||||||||| | ||||||||||    
T  39161532 tagttttagtcctttctgttagtttctct 39161504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 404 - 513
Target Start/End: Original strand, 37996068 - 37996177
Alignment:
Q  404 ttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatact 503  Q
    ||||||||||||||| |||||||| | || ||||||| ||||||||||||| || |||||||||||| |||||||||||| |||||||||||| | || |    
T  37996068 ttattcaatcacctgatcccttaattaaaatgattgtttcaatttggtcccttaactataatttgtatcaatttggtcccctatgttttgctttgttatt 37996167  T
Q  504 agttttagtc 513  Q
    ||||||||||    
T  37996168 agttttagtc 37996177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 403 - 518
Target Start/End: Original strand, 55173336 - 55173452
Alignment:
Q  403 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggt-cccgtatgttttgcttcgata 501  Q
    ||||||| |||| | ||| ||||||||||||||||||||| ||||||||||| || ||||||||||||  |||||||| ||| ||| ||||||| || ||    
T  55173336 cttattcgatcatccggttccttaacttaattgattgtcttaatttggtcccctaactataatttgtattaatttggtccccctatattttgctccgtta 55173435  T
Q  502 ctagttttagtcctttc 518  Q
    |||||||||||||||||    
T  55173436 ctagttttagtcctttc 55173452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 278 - 399
Target Start/End: Original strand, 17888500 - 17888621
Alignment:
Q  278 atgggcggttctatggccaggcgaccccaggcattcgcttggactccggcccaannnnnnngcaatttcttatgtaaatctctatgaatttcttatataa 377  Q
    |||||||||||||||||||||||||||| |||| ||||  || |||||||||||        |||||||||||||||||  |||||||||||||||||||    
T  17888500 atgggcggttctatggccaggcgaccccgggcactcgcccgggctccggcccaaatttttttcaatttcttatgtaaattcctatgaatttcttatataa 17888599  T
Q  378 atctctataaattggacaattt 399  Q
      | ||||||||||| ||||||    
T  17888600 ccccctataaattgggcaattt 17888621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 278 - 399
Target Start/End: Complemental strand, 31377567 - 31377447
Alignment:
Q  278 atgggcggttctatggccaggcgaccccaggcattcgcttggactccggcccaannnnnnngcaatttcttatgtaaatctctatgaatttcttatataa 377  Q
    |||||||||||||||||| ||||||||| |||| ||||  || |||||||||||        |||||||||||||||||| |||||||||||||||||||    
T  31377567 atgggcggttctatggcccggcgaccccgggcactcgcccgggctccggcccaaatttttt-caatttcttatgtaaatccctatgaatttcttatataa 31377469  T
Q  378 atctctataaattggacaattt 399  Q
      ||||||||||||| ||||||    
T  31377468 ccctctataaattgggcaattt 31377447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 403 - 531
Target Start/End: Complemental strand, 47097142 - 47097017
Alignment:
Q  403 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatac 502  Q
    |||||||||||| | | || |||||||||||||||||||||||||| ||||  || |||||||||||||||||||| ||   ||||||||||  || |||    
T  47097142 cttattcaatcatccgatctcttaacttaattgattgtctcaatttagtcctctaactataatttgtaccaatttgatc---tatgttttgccccgttac 47097046  T
Q  503 tagttttagtcctttcgggtagtttctct 531  Q
    ||||||||||| |||  | ||||||||||    
T  47097045 tagttttagtcatttttgttagtttctct 47097017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 339 - 397
Target Start/End: Complemental strand, 11054573 - 11054515
Alignment:
Q  339 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaat 397  Q
    ||||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||    
T  11054573 gcaatttcttatgtaaatccctatgaatttcttatataaacctctataaattgggcaat 11054515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 280 - 399
Target Start/End: Original strand, 16338165 - 16338284
Alignment:
Q  280 gggcggttctatggccaggcgaccccaggcattcgcttggactccggcccaannnnnnngcaatttcttatgtaaatctctatgaatttcttatataaat 379  Q
    ||||||||||| |||| ||||||||| |||||||||  ||| ||||| ||||       ||||||| || |||||||  |||||||||| ||||||||||    
T  16338165 gggcggttctaaggcccggcgaccccgggcattcgcccggattccgggccaatttttttgcaattttttgtgtaaattcctatgaattttttatataaat 16338264  T
Q  380 ctctataaattggacaattt 399  Q
    | ||||||||||||||||||    
T  16338265 ccctataaattggacaattt 16338284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 280 - 399
Target Start/End: Complemental strand, 1535947 - 1535828
Alignment:
Q  280 gggcggttctatggccaggcgaccccaggcattcgcttggactccggcccaannnnnnngcaatttcttatgtaaatctctatgaatttcttatataaat 379  Q
    ||||||||||| |||| ||||||||  |||| ||||  || |||||| ||||       |||||||||| |||||||| ||||||||||||||||||||     
T  1535947 gggcggttctaaggcccggcgacccggggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 1535848  T
Q  380 ctctataaattggacaattt 399  Q
    | ||||||||||| ||||||    
T  1535847 ccctataaattgggcaattt 1535828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 341 - 399
Target Start/End: Complemental strand, 52632633 - 52632575
Alignment:
Q  341 aatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 399  Q
    |||||||| |||||||| |||||||||||||||||||||| ||||||||||| ||||||    
T  52632633 aatttcttgtgtaaatccctatgaatttcttatataaatccctataaattgggcaattt 52632575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 339 - 399
Target Start/End: Complemental strand, 49284474 - 49284414
Alignment:
Q  339 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 399  Q
    |||||||||| |||||||| |||||||||||||||||||| | ||||||||||| ||||||    
T  49284474 gcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaattt 49284414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 403 - 450
Target Start/End: Complemental strand, 2623496 - 2623449
Alignment:
Q  403 cttattcaatcacctggtcccttaacttaattgattgtctcaatttgg 450  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||    
T  2623496 cttattcaatcactcggtcccttaacttaattgattgtctcaatttgg 2623449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 341 - 398
Target Start/End: Original strand, 12792244 - 12792301
Alignment:
Q  341 aatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaatt 398  Q
    |||||||||||||||| ||| ||||||||||||||||| | ||||||||||| |||||    
T  12792244 aatttcttatgtaaatttctctgaatttcttatataaacccctataaattgggcaatt 12792301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 339 - 392
Target Start/End: Original strand, 37801275 - 37801328
Alignment:
Q  339 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattgg 392  Q
    |||||||||| ||||||| ||||||||||| ||||||||||| |||||||||||    
T  37801275 gcaatttcttgtgtaaatttctatgaattttttatataaatccctataaattgg 37801328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 339 - 392
Target Start/End: Complemental strand, 47084129 - 47084076
Alignment:
Q  339 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattgg 392  Q
    |||||||||||||||||| ||| ||||||||||||||||| | |||||||||||    
T  47084129 gcaatttcttatgtaaatttctctgaatttcttatataaacccctataaattgg 47084076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 339 - 399
Target Start/End: Complemental strand, 20818684 - 20818624
Alignment:
Q  339 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 399  Q
    |||||||||| |||||||| ||||||||||||||||||||   ||||||||||| ||||||    
T  20818684 gcaatttcttttgtaaatccctatgaatttcttatataaactcctataaattggtcaattt 20818624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 339 - 399
Target Start/End: Complemental strand, 34241110 - 34241050
Alignment:
Q  339 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 399  Q
    |||||||||| |||| ||| |||||||||||||||||||| | ||||||||||| ||||||    
T  34241110 gcaatttcttgtgtagatccctatgaatttcttatataaacccctataaattgggcaattt 34241050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 339 - 399
Target Start/End: Original strand, 36012196 - 36012256
Alignment:
Q  339 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 399  Q
    ||||||| || |||||||| |||||||||||||||||||| | ||||||||||| ||||||    
T  36012196 gcaattttttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaattt 36012256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 339 - 399
Target Start/End: Complemental strand, 50328913 - 50328853
Alignment:
Q  339 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 399  Q
    |||||||||| |||||||  || | ||||||||||||||| ||||||||||||||||||||    
T  50328913 gcaatttcttttgtaaattcctcttaatttcttatataaacctctataaattggacaattt 50328853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 341 - 392
Target Start/End: Original strand, 10094406 - 10094457
Alignment:
Q  341 aatttcttatgtaaatctctatgaatttcttatataaatctctataaattgg 392  Q
    |||||||||||||||| ||| ||||||||||||||||| | |||||||||||    
T  10094406 aatttcttatgtaaatttctctgaatttcttatataaacccctataaattgg 10094457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 339 - 399
Target Start/End: Complemental strand, 25954867 - 25954807
Alignment:
Q  339 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 399  Q
    |||||||||| |||||||  ||||||||||||||||||||   ||||||||||| ||||||    
T  25954867 gcaatttcttgtgtaaattcctatgaatttcttatataaactcctataaattgggcaattt 25954807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 399
Target Start/End: Original strand, 9742545 - 9742604
Alignment:
Q  340 caatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 399  Q
    |||||||||||||||||  || |||||||||||||| || | ||||||||||| ||||||    
T  9742545 caatttcttatgtaaattcctctgaatttcttatattaacccctataaattgggcaattt 9742604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 467 - 518
Target Start/End: Original strand, 39161436 - 39161487
Alignment:
Q  467 tgtaccaatttggtcccgtatgttttgcttcgatactagttttagtcctttc 518  Q
    ||||||||||||||||| ||||||||| | || | |||||||||||||||||    
T  39161436 tgtaccaatttggtcccatatgttttgatccgttcctagttttagtcctttc 39161487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 341 - 399
Target Start/End: Original strand, 35322717 - 35322775
Alignment:
Q  341 aatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 399  Q
    ||||| |||| ||||| ||| ||||| ||||||||||| |||||||||||| |||||||    
T  35322717 aattttttatataaatttctctgaatctcttatataaacctctataaattgaacaattt 35322775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 341 - 399
Target Start/End: Original strand, 46583554 - 46583612
Alignment:
Q  341 aatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 399  Q
    ||||| || |||||||| |||||||||||||||||||| | ||||||||| | ||||||    
T  46583554 aattttttgtgtaaatccctatgaatttcttatataaacccctataaattaggcaattt 46583612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 363 - 399
Target Start/End: Original strand, 322584 - 322620
Alignment:
Q  363 gaatttcttatataaatctctataaattggacaattt 399  Q
    |||||||||||||||| | ||||||||||||||||||    
T  322584 gaatttcttatataaacccctataaattggacaattt 322620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 419 - 495
Target Start/End: Original strand, 9738136 - 9738212
Alignment:
Q  419 gtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgct 495  Q
    ||||||||||||||||| ||||  ||| |||||||| ||  ||||||||||||||| || ||||  || ||||||||    
T  9738136 gtcccttaacttaattgtttgtaccaaattggtcccctaaatataatttgtaccaaattcgtcctctaagttttgct 9738212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 339 - 391
Target Start/End: Original strand, 19124749 - 19124801
Alignment:
Q  339 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattg 391  Q
    ||||||||||||||||||  || |||||||||||||||||  ||| |||||||    
T  19124749 gcaatttcttatgtaaattcctctgaatttcttatataaacatctgtaaattg 19124801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 339 - 399
Target Start/End: Complemental strand, 46474111 - 46474051
Alignment:
Q  339 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 399  Q
    ||||||||||||||||||  || ||||||| ||||||||| |  ||||||||| |||||||    
T  46474111 gcaatttcttatgtaaattcctgtgaattttttatataaacccatataaattgtacaattt 46474051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 467 - 518
Target Start/End: Original strand, 47096947 - 47096999
Alignment:
Q  467 tgtaccaatttggtcccg-tatgttttgcttcgatactagttttagtcctttc 518  Q
    |||||||||||||||||  ||||||||||| |  |||||||||||||||||||    
T  47096947 tgtaccaatttggtccccctatgttttgctccattactagttttagtcctttc 47096999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 85; Significance: 3e-40; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 403 - 531
Target Start/End: Complemental strand, 23050 - 22922
Alignment:
Q  403 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatac 502  Q
    |||||||||||||| ||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||| |||  ||||||||||| || |||    
T  23050 cttattcaatcacccggtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttgatcctctatgttttgctccgttac 22951  T
Q  503 tagttttagtcctttcgggtagtttctct 531  Q
    |||||||||||||||| | ||||||||||    
T  22950 tagttttagtcctttctgttagtttctct 22922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 85; Significance: 3e-40; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 403 - 570
Target Start/End: Original strand, 21249364 - 21249532
Alignment:
Q  403 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatac 502  Q
    |||||||||||||||||||||||| | ||||||||||||||||||||||||| ||  ||||| |||||||||||| ||||| |||||||||||||| |||    
T  21249364 cttattcaatcacctggtcccttaccgtaattgattgtctcaatttggtcccctaattataaattgtaccaatttagtcccctatgttttgcttcgttac 21249463  T
Q  503 tagttttagtcctttcgggtagtttctct-nnnnnnnngttaacttatgtaccaatttggtcccctatg 570  Q
    |||||||| ||||||| | ||||||||||         |||||||||||||||||||||||||| ||||    
T  21249464 tagttttaatcctttctgttagtttctctcaaaaaaatgttaacttatgtaccaatttggtcccttatg 21249532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 278 - 399
Target Start/End: Original strand, 8456913 - 8457034
Alignment:
Q  278 atgggcggttctatggccaggcgaccccaggcattcgcttggactccggcccaannnnnnngcaatttcttatgtaaatctctatgaatttcttatataa 377  Q
    |||||||||||||||||| |||||||||| ||| ||||  || |||||||||||        |||||||||||||||||| |||||||||||||||||||    
T  8456913 atgggcggttctatggcccggcgaccccatgcactcgcccgggctccggcccaaatttttttcaatttcttatgtaaatccctatgaatttcttatataa 8457012  T
Q  378 atctctataaattggacaattt 399  Q
      | ||||||||||| ||||||    
T  8457013 ccccctataaattgggcaattt 8457034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 281 - 399
Target Start/End: Complemental strand, 38397773 - 38397655
Alignment:
Q  281 ggcggttctatggccaggcgaccccaggcattcgcttggactccggcccaannnnnnngcaatttcttatgtaaatctctatgaatttcttatataaatc 380  Q
    |||||||||| |||| ||||||||| |||| ||||  || |||||| ||||       |||||||||| |||||||| |||||||||||||||||||| |    
T  38397773 ggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacc 38397674  T
Q  381 tctataaattggacaattt 399  Q
     ||||||||||| ||||||    
T  38397673 cctataaattgggcaattt 38397655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 340 - 399
Target Start/End: Complemental strand, 10081261 - 10081202
Alignment:
Q  340 caatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 399  Q
    |||||||||||||||||| |||||||||||||||||||| | ||||||||||| ||||||    
T  10081261 caatttcttatgtaaatccctatgaatttcttatataaacccctataaattgggcaattt 10081202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 280 - 399
Target Start/End: Original strand, 6257362 - 6257481
Alignment:
Q  280 gggcggttctatggccaggcgaccccaggcattcgcttggactccggcccaannnnnnngcaatttcttatgtaaatctctatgaatttcttatataaat 379  Q
    ||||||||||| |||| ||||||||| |||| ||||  || |||||| ||||       |||||||||| |||||||| |||||||||||||||| |||     
T  6257362 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatacaaac 6257461  T
Q  380 ctctataaattggacaattt 399  Q
    | ||||||||||| ||||||    
T  6257462 ccctataaattgggcaattt 6257481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 340 - 399
Target Start/End: Original strand, 9737993 - 9738054
Alignment:
Q  340 caatttcttatgtaaa--tctctatgaatttcttatataaatctctataaattggacaattt 399  Q
    ||||||||||||||||  || |||||||||||||||||||||| ||||||||||||||||||    
T  9737993 caatttcttatgtaaaaatccctatgaatttcttatataaatccctataaattggacaattt 9738054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 341 - 399
Target Start/End: Complemental strand, 11856410 - 11856352
Alignment:
Q  341 aatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 399  Q
    ||||||||||||||||| || ||||||||||||||||||| ||||||||||| ||||||    
T  11856410 aatttcttatgtaaatcgctctgaatttcttatataaatcactataaattgggcaattt 11856352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 341 - 399
Target Start/End: Complemental strand, 42119737 - 42119679
Alignment:
Q  341 aatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 399  Q
    ||||||||||||||||  || ||||||||||||||||| ||||||||||||||||||||    
T  42119737 aatttcttatgtaaattcctctgaatttcttatataaacctctataaattggacaattt 42119679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 339 - 399
Target Start/End: Complemental strand, 23218602 - 23218542
Alignment:
Q  339 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 399  Q
    |||||||||| |||||||| |||||||||||||||||||| | ||||||||||| ||||||    
T  23218602 gcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaattt 23218542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 340 - 399
Target Start/End: Original strand, 16618582 - 16618641
Alignment:
Q  340 caatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 399  Q
    ||||||||| |||||||| ||||||||||||||||||||   ||||||||||||||||||    
T  16618582 caatttcttgtgtaaatccctatgaatttcttatataaactcctataaattggacaattt 16618641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 340 - 399
Target Start/End: Original strand, 25560339 - 25560398
Alignment:
Q  340 caatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 399  Q
    ||||||||||||||||||  ||| |||||||||||||||  |||||||||||||||||||    
T  25560339 caatttcttatgtaaatccttataaatttcttatataaacatctataaattggacaattt 25560398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 339 - 398
Target Start/End: Original strand, 29491425 - 29491483
Alignment:
Q  339 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaatt 398  Q
    |||||||||||||||||| |||||||||||||||||| || | |||||||||||||||||    
T  29491425 gcaatttcttatgtaaatttctatgaatttcttatat-aacccctataaattggacaatt 29491483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 340 - 399
Target Start/End: Original strand, 33271282 - 33271341
Alignment:
Q  340 caatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 399  Q
    |||||||||||||||||  |  ||||||||||||||||| ||||||||||||||||||||    
T  33271282 caatttcttatgtaaattccgttgaatttcttatataaacctctataaattggacaattt 33271341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 402 - 452
Target Start/End: Complemental strand, 21249679 - 21249629
Alignment:
Q  402 acttattcaatcacctggtcccttaacttaattgattgtctcaatttggtc 452  Q
    ||||||||||||| || |||||||||||||||||||||||| |||||||||    
T  21249679 acttattcaatcatcttgtcccttaacttaattgattgtcttaatttggtc 21249629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 280 - 399
Target Start/End: Original strand, 37168985 - 37169104
Alignment:
Q  280 gggcggttctatggccaggcgaccccaggcattcgcttggactccggcccaannnnnnngcaatttcttatgtaaatctctatgaatttcttatataaat 379  Q
    ||||||||||| |||| ||||||||| |||| | ||  || |||||| ||||       ||||||| || |||||||| ||||||||||||||||||||     
T  37168985 gggcggttctaaggcccggcgaccccgggcacttgcccgggctccgggccaaattttttgcaattttttgtgtaaatccctatgaatttcttatataaac 37169084  T
Q  380 ctctataaattggacaattt 399  Q
    | ||||||||||| ||||||    
T  37169085 ccctataaattgggcaattt 37169104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 280 - 399
Target Start/End: Original strand, 39862439 - 39862558
Alignment:
Q  280 gggcggttctatggccaggcgaccccaggcattcgcttggactccggcccaannnnnnngcaatttcttatgtaaatctctatgaatttcttatataaat 379  Q
    ||||||||||| |||| ||||||||| |||| ||||  |  |||||| ||||       |||||||||| |||||||  ||||||||||||||||||||     
T  39862439 gggcggttctaaggcccggcgaccccgggcactcgcccgagctccgggccaatttttttgcaatttcttgtgtaaattcctatgaatttcttatataaac 39862538  T
Q  380 ctctataaattggacaattt 399  Q
    | ||||||||||| ||||||    
T  39862539 ccctataaattgggcaattt 39862558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 340 - 399
Target Start/End: Original strand, 29790231 - 29790290
Alignment:
Q  340 caatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 399  Q
    |||||||||||||||||   ||||||||||||||||||| || |||||||||| ||||||    
T  29790231 caatttcttatgtaaattcttatgaatttcttatataaacctttataaattgggcaattt 29790290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 467 - 517
Target Start/End: Original strand, 21249511 - 21249561
Alignment:
Q  467 tgtaccaatttggtcccgtatgttttgcttcgatactagttttagtccttt 517  Q
    ||||||||||||||||| |||||||||||  | ||||||||||||||||||    
T  21249511 tgtaccaatttggtcccttatgttttgctctgttactagttttagtccttt 21249561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 274 - 399
Target Start/End: Complemental strand, 15631796 - 15631670
Alignment:
Q  274 ctctatgggcggttctatggccaggcgaccccaggcattcgcttggactccggcccaannnnnnngcaatttcttatgtaaatctctatgaatttcttat 373  Q
    ||||| ||||||||||| |||| ||||||||| |||| ||||  || |||| | ||||        ||||||||| | |||||| |||||||||||||||    
T  15631796 ctctaggggcggttctaaggcccggcgaccccgggcactcgcccgggctccaggccaaattttttacaatttcttgtataaatccctatgaatttcttat 15631697  T
Q  374 ataaa-tctctataaattggacaattt 399  Q
    |||||  | ||||||||||||||||||    
T  15631696 ataaaccccctataaattggacaattt 15631670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 339 - 399
Target Start/End: Original strand, 614403 - 614463
Alignment:
Q  339 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 399  Q
    ||||||||||||||||||  || ||||||| ||||||||||| ||||||||| | ||||||    
T  614403 gcaatttcttatgtaaattcctctgaattttttatataaatccctataaatttggcaattt 614463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 339 - 399
Target Start/End: Original strand, 36769085 - 36769145
Alignment:
Q  339 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 399  Q
    ||||||||||||||||||  || ||||||||||||||||| |||||| |||| | ||||||    
T  36769085 gcaatttcttatgtaaattcctctgaatttcttatataaacctctatgaattaggcaattt 36769145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 391
Target Start/End: Original strand, 15475408 - 15475457
Alignment:
Q  342 atttcttatgtaaatctctatgaatttcttatataaatctctataaattg 391  Q
    ||||||||||||||| ||| | ||||| |||||||||||| |||||||||    
T  15475408 atttcttatgtaaatttctcttaattttttatataaatctatataaattg 15475457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 339 - 391
Target Start/End: Complemental strand, 27916257 - 27916205
Alignment:
Q  339 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattg 391  Q
    ||||||||||||||||||  || |||||||||||||||||   ||||||||||    
T  27916257 gcaatttcttatgtaaattcctctgaatttcttatataaactcctataaattg 27916205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 3e-37; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 404 - 531
Target Start/End: Original strand, 28715645 - 28715772
Alignment:
Q  404 ttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatact 503  Q
    ||||||||||||| ||||||||||||||||| ||||| | ||||||||  | || |||||||||||| |||||||||||| |||||||||||||| ||||    
T  28715645 ttattcaatcacccggtcccttaacttaattaattgttttaatttggtttcctaactataatttgtatcaatttggtcccctatgttttgcttcgttact 28715744  T
Q  504 agttttagtcctttcgggtagtttctct 531  Q
    ||||||||||||||| ||||||||||||    
T  28715745 agttttagtcctttctggtagtttctct 28715772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 403 - 531
Target Start/End: Original strand, 41985912 - 41986040
Alignment:
Q  403 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatac 502  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||| |||| || |||||||||||  |||||||||||| |||||||||||| | |||    
T  41985912 cttattcaatcacccagtcccttaacttaattgattgtctcaatttgatcccctaactataatttgtttcaatttggtcccatatgttttgctttgttac 41986011  T
Q  503 tagttttagtcctttcgggtagtttctct 531  Q
    || ||||||||||||| | ||||||||||    
T  41986012 taattttagtcctttccgttagtttctct 41986040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 398 - 513
Target Start/End: Original strand, 30862215 - 30862330
Alignment:
Q  398 ttagacttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttc 497  Q
    |||| ||||||||||||   ||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||| ||| ||||||||     
T  30862215 ttaggcttattcaatcattcggtcccttaacttaattgattgtctgaatttggtcccctaactataatttgtaccaatttggtcccctatattttgcttt 30862314  T
Q  498 gatactagttttagtc 513  Q
    | ||||||||||||||    
T  30862315 gttactagttttagtc 30862330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 397 - 531
Target Start/End: Complemental strand, 28715993 - 28715859
Alignment:
Q  397 tttagacttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgctt 496  Q
    ||||| |||||||||| ||| ||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||  || ||||||||     
T  28715993 tttaggcttattcaattacccggtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcctctaagttttgctc 28715894  T
Q  497 cgatactagttttagtcctttcgggtagtttctct 531  Q
     |  ||||||||||||| |||| | ||||||||||    
T  28715893 agtcactagttttagtcatttctgttagtttctct 28715859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 403 - 531
Target Start/End: Original strand, 6474282 - 6474411
Alignment:
Q  403 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatg-ttttgcttcgata 501  Q
    |||||||||| ||| | |||||||||||||||||||||||||||||| |||| || ||||||||| || |||||||||||| |||| |||||||| | ||    
T  6474282 cttattcaattaccggatcccttaacttaattgattgtctcaatttgatcccctaactataatttatatcaatttggtcccctatgtttttgctttgtta 6474381  T
Q  502 ctagttttagtcctttcgggtagtttctct 531  Q
    |||||||||||| |||| | ||||||||||    
T  6474382 ctagttttagtcttttctgttagtttctct 6474411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 397 - 570
Target Start/End: Complemental strand, 6474631 - 6474458
Alignment:
Q  397 tttagacttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgctt 496  Q
    ||||| |||||||||||||| | ||||||||||||||||||||||| ||||||||| | || |||||| ||||||| ||||| |||| |||| ||||||     
T  6474631 tttaggcttattcaatcacccgatcccttaacttaattgattgtcttaatttggtctcctaactataa-ttgtaccgatttgctcccttatgctttgctc 6474533  T
Q  497 cgatactagttttagtcctttcgggtagtttctct-nnnnnnnngttaacttatgtaccaatttggtcccctatg 570  Q
     | ||||||||||||||||||  | ||||||||||         |||||||||||||||||||||||||| ||||    
T  6474532 tgttactagttttagtcctttatgttagtttctctcaaaaaaacgttaacttatgtaccaatttggtcccttatg 6474458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 403 - 570
Target Start/End: Original strand, 47373464 - 47373633
Alignment:
Q  403 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccata--tctataatttgtaccaatttggtcccgtatgttttgcttcgat 500  Q
    |||||||||||||  | || ||||||||||||||||||||||||||| |||  ||  | |||||||||||||||||||||||| |||||||||||  | |    
T  47373464 cttattcaatcactcgatctcttaacttaattgattgtctcaatttgatcctctaattatataatttgtaccaatttggtcccctatgttttgctctgtt 47373563  T
Q  501 actagttttagtcctttcgggtagtttctctnnnnnnnngttaacttatgtaccaatttggtcccctatg 570  Q
     |||||||||||| |||  | ||||||||||        |||||||||||||||||||| ||||||||||    
T  47373564 gctagttttagtcatttatgttagtttctctcaaaaaacgttaacttatgtaccaatttagtcccctatg 47373633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 418 - 531
Target Start/End: Complemental strand, 47373792 - 47373679
Alignment:
Q  418 ggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatactagttttagtccttt 517  Q
    ||||||||||||||||||||||||||||||||||||| ||  |||||||||||||||||| ||| | ||||||||| |  | ||||||||||| ||||||    
T  47373792 ggtcccttaacttaattgattgtctcaatttggtcccctaattataatttgtaccaatttagtctcatatgttttgatgtgttactagttttaatccttt 47373693  T
Q  518 cgggtagtttctct 531  Q
      | ||||||||||    
T  47373692 atgttagtttctct 47373679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 404 - 531
Target Start/End: Complemental strand, 30862564 - 30862437
Alignment:
Q  404 ttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatact 503  Q
    |||||||||||  ||||||||||| | |||||||||| ||||||| || || || |||||||||||| |||||||||||| |||||||||||  | ||||    
T  30862564 ttattcaatcaattggtcccttaattgaattgattgtttcaattttgttccctaactataatttgtatcaatttggtcccttatgttttgctctgttact 30862465  T
Q  504 agttttagtcctttcgggtagtttctct 531  Q
    | |||||||| |||| | ||||||||||    
T  30862464 aattttagtcttttctgttagtttctct 30862437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 403 - 473
Target Start/End: Complemental strand, 41986253 - 41986183
Alignment:
Q  403 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtacca 473  Q
    |||||||||||||| ||| |||||||||||||| ||||||||||||| |||| || |||||||||||||||    
T  41986253 cttattcaatcacccggttccttaacttaattgtttgtctcaatttgatcccctaactataatttgtacca 41986183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 280 - 399
Target Start/End: Original strand, 44164695 - 44164814
Alignment:
Q  280 gggcggttctatggccaggcgaccccaggcattcgcttggactccggcccaannnnnnngcaatttcttatgtaaatctctatgaatttcttatataaat 379  Q
    ||||||||||| |||| ||||||||| |||| ||||  || |||||| ||||       |||||||||| ||||||| |||||||||||||||||||||     
T  44164695 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatttctatgaatttcttatataaac 44164794  T
Q  380 ctctataaattggacaattt 399  Q
    | ||||||||||| ||||||    
T  44164795 ccctataaattgggcaattt 44164814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 397 - 454
Target Start/End: Complemental strand, 22226723 - 22226666
Alignment:
Q  397 tttagacttattcaatcacctggtcccttaacttaattgattgtctcaatttggtccc 454  Q
    ||||| |||||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  22226723 tttaggcttattcaatcacctgatcccttagcttaattgattgtctcaatttggtccc 22226666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 339 - 399
Target Start/End: Original strand, 19334571 - 19334631
Alignment:
Q  339 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 399  Q
    ||||||||||||||||||  |||||||||||||||||||| | ||||||||||||||||||    
T  19334571 gcaatttcttatgtaaatacctatgaatttcttatataaacccctataaattggacaattt 19334631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 339 - 399
Target Start/End: Original strand, 29981124 - 29981184
Alignment:
Q  339 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 399  Q
    |||||||||| |||||||| ||||||||||||||||||||  |||||||||||||||||||    
T  29981124 gcaatttcttgtgtaaatccctatgaatttcttatataaacttctataaattggacaattt 29981184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 280 - 399
Target Start/End: Complemental strand, 34259694 - 34259575
Alignment:
Q  280 gggcggttctatggccaggcgaccccaggcattcgcttggactccggcccaannnnnnngcaatttcttatgtaaatctctatgaatttcttatataaat 379  Q
    ||||||||||| |||| |||||| || |||| ||||  || |||||| ||||       |||||||||| |||||||| ||||||||||||||||||||     
T  34259694 gggcggttctaaggcccggcgactccgggcactcgcccgggctccgggccaatttttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 34259595  T
Q  380 ctctataaattggacaattt 399  Q
    | ||||||||||| ||||||    
T  34259594 ccctataaattgggcaattt 34259575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 280 - 399
Target Start/End: Complemental strand, 34707292 - 34707173
Alignment:
Q  280 gggcggttctatggccaggcgaccccaggcattcgcttggactccggcccaannnnnnngcaatttcttatgtaaatctctatgaatttcttatataaat 379  Q
    ||||||||||| | || ||||||||| |||| ||||  || |||||| ||||       |||||||||| |||||||| ||||||||||||||||||||     
T  34707292 gggcggttctaagacccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 34707193  T
Q  380 ctctataaattggacaattt 399  Q
    | ||||||||||| ||||||    
T  34707192 ccctataaattgggcaattt 34707173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 339 - 399
Target Start/End: Complemental strand, 10576790 - 10576730
Alignment:
Q  339 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 399  Q
    |||||||||| |||||||| |||||||||||||||||||| | ||||||||||| ||||||    
T  10576790 gcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaattt 10576730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 339 - 399
Target Start/End: Original strand, 32876541 - 32876601
Alignment:
Q  339 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 399  Q
    |||||||||| |||| ||| |||||||||||||||||||| | ||||||||||||||||||    
T  32876541 gcaatttcttgtgtagatccctatgaatttcttatataaacccctataaattggacaattt 32876601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 340 - 399
Target Start/End: Original strand, 29555951 - 29556010
Alignment:
Q  340 caatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 399  Q
    ||||||||| |||||||  |||||||||||||||||||| | ||||||||||||||||||    
T  29555951 caatttcttgtgtaaattcctatgaatttcttatataaacccctataaattggacaattt 29556010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 340 - 399
Target Start/End: Original strand, 33057669 - 33057728
Alignment:
Q  340 caatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 399  Q
    |||||||||||||||||| |||||||||||||||||||  | |||||||||| |||||||    
T  33057669 caatttcttatgtaaatccctatgaatttcttatataatcccctataaattgaacaattt 33057728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 280 - 399
Target Start/End: Original strand, 29238095 - 29238214
Alignment:
Q  280 gggcggttctatggccaggcgaccccaggcattcgcttggactccggcccaannnnnnngcaatttcttatgtaaatctctatgaatttcttatataaat 379  Q
    ||||||||||| |||| ||| ||||| |||| ||||  || |||||| ||||       |||||||||| |||||||| ||||||||||||||||||||     
T  29238095 gggcggttctaaggcccggcaaccccgggcactcgcccgggctccgggccaatttttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 29238194  T
Q  380 ctctataaattggacaattt 399  Q
    | ||| |||||||| |||||    
T  29238195 ccctaaaaattggaaaattt 29238214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 419 - 527
Target Start/End: Complemental strand, 6271296 - 6271188
Alignment:
Q  419 gtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatactagttttagtcctttc 518  Q
    ||||||||||||||||| || |  ||| |||||||| ||  ||||||||||||||| || ||||  || |||||||| || |||||||||  ||||||||    
T  6271296 gtcccttaacttaattgtttctaccaaattggtcccctaaatataatttgtaccaaattcgtcctttaagttttgctccgttactagtttcggtcctttc 6271197  T
Q  519 gggtagttt 527  Q
     | ||||||    
T  6271196 tgttagttt 6271188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 339 - 399
Target Start/End: Complemental strand, 9770776 - 9770716
Alignment:
Q  339 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 399  Q
    |||||||||||||||||||    ||||||||||||||||| | |||| |||||||||||||    
T  9770776 gcaatttcttatgtaaatcatcctgaatttcttatataaaccactatgaattggacaattt 9770716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 339 - 399
Target Start/End: Complemental strand, 15017890 - 15017830
Alignment:
Q  339 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 399  Q
    ||||||||||||||||||  || |||||||||||||||||    |||||||||||||||||    
T  15017890 gcaatttcttatgtaaattcctctgaatttcttatataaacgcgtataaattggacaattt 15017830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 339 - 399
Target Start/End: Original strand, 17303125 - 17303185
Alignment:
Q  339 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 399  Q
    ||||||||||||||||||  |||||||||||||||||||| |  | |||||||| ||||||    
T  17303125 gcaatttcttatgtaaattcctatgaatttcttatataaacccttgtaaattgggcaattt 17303185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 339 - 399
Target Start/End: Original strand, 24320450 - 24320510
Alignment:
Q  339 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 399  Q
    |||||||||| |||||||  ||| |||||||||||||||| | ||||||||||| ||||||    
T  24320450 gcaatttcttgtgtaaattcctacgaatttcttatataaacccctataaattgggcaattt 24320510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 419 - 495
Target Start/End: Complemental strand, 38408229 - 38408153
Alignment:
Q  419 gtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgct 495  Q
    ||||||||||||||||| |||| |||| |||||||| ||  ||||||||||||||| || ||||  || ||||||||    
T  38408229 gtcccttaacttaattgtttgtatcaaattggtcccctaaatataatttgtaccaaattcgtcctctaagttttgct 38408153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 467 - 517
Target Start/End: Complemental strand, 41986108 - 41986058
Alignment:
Q  467 tgtaccaatttggtcccgtatgttttgcttcgatactagttttagtccttt 517  Q
    ||||||||||||||||| ||||||||||| || | ||| ||||||||||||    
T  41986108 tgtaccaatttggtcccctatgttttgctccgttgctaattttagtccttt 41986058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 540 - 570
Target Start/End: Complemental strand, 41986117 - 41986087
Alignment:
Q  540 gttaacttatgtaccaatttggtcccctatg 570  Q
    |||||||||||||||||||||||||||||||    
T  41986117 gttaacttatgtaccaatttggtcccctatg 41986087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 399
Target Start/End: Complemental strand, 10334295 - 10334235
Alignment:
Q  339 gcaatttcttatgtaaatctctatgaatttcttatataaa-tctctataaattggacaattt 399  Q
    ||||||||||||||||||  || ||||||||||||||||| ||| |||||||||| ||||||    
T  10334295 gcaatttcttatgtaaattcctctgaatttcttatataaactct-tataaattgggcaattt 10334235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 3e-37; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 396 - 527
Target Start/End: Complemental strand, 24798974 - 24798843
Alignment:
Q  396 atttagacttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgct 495  Q
    |||||| |||||||||||||| | |||||||| |||||||||||||| |||||| |||| || |||||||||||| |||||||||||| |||||||||||    
T  24798974 atttaggcttattcaatcacccgatcccttaaattaattgattgtcttaatttgatcccctaactataatttgtatcaatttggtcccctatgttttgct 24798875  T
Q  496 tcgatactagttttagtcctttcgggtagttt 527  Q
    ||| |||||||||||||||||||  |||||||    
T  24798874 tcgttactagttttagtcctttctagtagttt 24798843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 403 - 513
Target Start/End: Complemental strand, 2216923 - 2216813
Alignment:
Q  403 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatac 502  Q
    |||||||||||| | ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |||||||||||| | ||     
T  2216923 cttattcaatcatccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgctttgttat 2216824  T
Q  503 tagttttagtc 513  Q
    |||||||||||    
T  2216823 tagttttagtc 2216813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 406 - 570
Target Start/End: Original strand, 11643754 - 11643919
Alignment:
Q  406 attcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatactag 505  Q
    ||||||||||| |||||||||| ||||||||||||||||||||| |||| || |||||||||||| ||||||||| || ||||||||| || | ||||||    
T  11643754 attcaatcacccggtcccttaatttaattgattgtctcaatttgatcccctaactataatttgtatcaatttggttccctatgttttgttttgttactag 11643853  T
Q  506 ttttagtcctttcgggtagtttctct-nnnnnnnngttaacttatgtaccaatttggtcccctatg 570  Q
    |||||||||| || | ||||||||||         |||||||||||||||||||||||||||||||    
T  11643854 ttttagtcctctctgttagtttctctaaaaaaaacgttaacttatgtaccaatttggtcccctatg 11643919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 403 - 531
Target Start/End: Original strand, 18494736 - 18494862
Alignment:
Q  403 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatac 502  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||||||||| || ||||||||||||||| ||||||||| |||| ||||||| | |||    
T  18494736 cttattcaatcacatggtcccttaactttattgattgtctcaatttggtccc-tagctataatttgtaccattttggtcccctatg-tttgctttgttac 18494833  T
Q  503 tagttttagtcctttcgggtagtttctct 531  Q
    |||||||||||||||  | ||||||||||    
T  18494834 tagttttagtcctttttgttagtttctct 18494862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 418 - 531
Target Start/End: Original strand, 24798642 - 24798755
Alignment:
Q  418 ggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatactagttttagtccttt 517  Q
    |||||||||||||||||| |||| ||||||||||||| |  ||||||||||||||||||||||||  |||||||||||||| |||||||||||||| |||    
T  24798642 ggtcccttaacttaattggttgtttcaatttggtcccctgactataatttgtaccaatttggtcctctatgttttgcttcgttactagttttagtcattt 24798741  T
Q  518 cgggtagtttctct 531  Q
    | | ||||||||||    
T  24798742 ctgttagtttctct 24798755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 397 - 518
Target Start/End: Complemental strand, 11644099 - 11643979
Alignment:
Q  397 tttagacttattcaatcacctggtcccttaacttaattgattgtctcaatttggt-cccatatctataatttgtaccaatttggtcccgtatgttttgct 495  Q
    ||||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||| || |||||||||||| |||||||||||| |||||||| ||    
T  11644099 tttaggcttattcaatcacccggtcccttaacttaattgattgtctcaatttggtccccctaactataatttgtatcaatttggtccc-tatgtttt-ct 11644002  T
Q  496 tcgatactagttttagtcctttc 518  Q
    | | |||||||||||||| ||||    
T  11644001 ttgttactagttttagtcttttc 11643979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 403 - 569
Target Start/End: Complemental strand, 18495077 - 18494911
Alignment:
Q  403 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatac 502  Q
    |||||||||||| || |||||||||||||||||||| | | |||||| |||| || |||||||||||| |||||||||||| ||| ||||| | || ||     
T  18495077 cttattcaatcatctagtcccttaacttaattgattatattaatttgatcccttaactataatttgtatcaatttggtcccctatattttgatccgttat 18494978  T
Q  503 tagttttagtcctttcgggtagtttctctnnnnnnnngttaacttatgtaccaatttggtcccctat 569  Q
    |||||||||| ||||| | ||||||||||        ||||||||||||| ||||||||||||||||    
T  18494977 tagttttagttctttctgttagtttctctaaaaaaacgttaacttatgtagcaatttggtcccctat 18494911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 403 - 495
Target Start/End: Original strand, 24690357 - 24690449
Alignment:
Q  403 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgct 495  Q
    |||||||||||||| |||| |||||||||||||||||||||||||||||||| |  ||||||||||||||||||||||||  |||||||||||    
T  24690357 cttattcaatcacccggtctcttaacttaattgattgtctcaatttggtccccttactataatttgtaccaatttggtcctctatgttttgct 24690449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 400 - 483
Target Start/End: Complemental strand, 24690694 - 24690611
Alignment:
Q  400 agacttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtccc 483  Q
    ||||||||||||||||| | ||||||||||||||||||||| | |||||||| || || |||||||||||||||||||||||||    
T  24690694 agacttattcaatcacccgatcccttaacttaattgattgttttaatttggttccctaactataatttgtaccaatttggtccc 24690611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 280 - 399
Target Start/End: Original strand, 9231806 - 9231925
Alignment:
Q  280 gggcggttctatggccaggcgaccccaggcattcgcttggactccggcccaannnnnnngcaatttcttatgtaaatctctatgaatttcttatataaat 379  Q
    ||||||||||| |||  ||||||||| |||| ||||  || |||||| ||||       |||||||||| |||||||||||||||||||||||||||||     
T  9231806 gggcggttctaaggctcggcgaccccgggcactcgcccgggctccgggccaatttttttgcaatttcttgtgtaaatctctatgaatttcttatataaac 9231905  T
Q  380 ctctataaattggacaattt 399  Q
    | ||||||||||| ||||||    
T  9231906 ccctataaattgggcaattt 9231925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 339 - 399
Target Start/End: Original strand, 14309809 - 14309869
Alignment:
Q  339 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 399  Q
    |||||||||| |||||||| |||||||||||||||||||||| ||||||||||| ||||||    
T  14309809 gcaatttcttgtgtaaatccctatgaatttcttatataaatccctataaattgggcaattt 14309869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 280 - 391
Target Start/End: Complemental strand, 13627716 - 13627605
Alignment:
Q  280 gggcggttctatggccaggcgaccccaggcattcgcttggactccggcccaannnnnnngcaatttcttatgtaaatctctatgaatttcttatataaat 379  Q
    ||||||||||| |||| |||||||||| ||| |||   || |||||| ||||       |||||||||| |||||||| ||||||||||||||||||||     
T  13627716 gggcggttctaaggcccggcgaccccaagcactcgtccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 13627617  T
Q  380 ctctataaattg 391  Q
    | ||||||||||    
T  13627616 ccctataaattg 13627605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 339 - 391
Target Start/End: Original strand, 1727944 - 1727996
Alignment:
Q  339 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattg 391  Q
    |||||||||| |||||||| |||||||||||||||||||| | ||||||||||    
T  1727944 gcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattg 1727996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 339 - 399
Target Start/End: Original strand, 24694662 - 24694722
Alignment:
Q  339 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 399  Q
    |||||||||| |||||||| ||||||||||||||||||||   ||||||||||| ||||||    
T  24694662 gcaatttcttgtgtaaatccctatgaatttcttatataaactcctataaattgggcaattt 24694722  T

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Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 343 - 399
Target Start/End: Complemental strand, 27863812 - 27863756
Alignment:
Q  343 tttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 399  Q
    |||||||||||||| ||| ||||||||||||||||| |  |||||||||||||||||    
T  27863812 tttcttatgtaaatttctctgaatttcttatataaacccttataaattggacaattt 27863756  T

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Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 467 - 518
Target Start/End: Original strand, 11643898 - 11643949
Alignment:
Q  467 tgtaccaatttggtcccgtatgttttgcttcgatactagttttagtcctttc 518  Q
    ||||||||||||||||| ||||||||||| || |||||||||||||| ||||    
T  11643898 tgtaccaatttggtcccctatgttttgctccgttactagttttagtcatttc 11643949  T

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Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 466 - 519
Target Start/End: Complemental strand, 24798822 - 24798769
Alignment:
Q  466 ttgtaccaatttggtcccgtatgttttgcttcgatactagttttagtcctttcg 519  Q
    ||||| |||||||||||| ||||||||||| || | ||||||||||||||||||    
T  24798822 ttgtatcaatttggtcccctatgttttgctccgttcctagttttagtcctttcg 24798769  T

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Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 339 - 399
Target Start/End: Original strand, 13103129 - 13103189
Alignment:
Q  339 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 399  Q
    ||||||| ||||||||||  || ||||||||||||||||| || |||||||||| ||||||    
T  13103129 gcaattttttatgtaaattcctctgaatttcttatataaacctttataaattgggcaattt 13103189  T

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Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 339 - 399
Target Start/End: Original strand, 28750661 - 28750721
Alignment:
Q  339 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 399  Q
    ||||||||||||||||||   | ||||||||||||||||| | ||||||||||| ||||||    
T  28750661 gcaatttcttatgtaaattcttctgaatttcttatataaacccctataaattgggcaattt 28750721  T

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Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 419 - 474
Target Start/End: Complemental strand, 9955698 - 9955643
Alignment:
Q  419 gtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaa 474  Q
    ||||||||||||||||| |||| |||| |||||||| ||  |||||||||||||||    
T  9955698 gtcccttaacttaattgtttgtatcaaattggtcccctaaatataatttgtaccaa 9955643  T

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Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 419 - 517
Target Start/End: Original strand, 9954825 - 9954923
Alignment:
Q  419 gtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatactagttttagtccttt 517  Q
    ||||||||||||||||| ||||  ||| |||||||| ||  ||||||||||||||| || ||||  || |||||||| || ||| |||||  |||||||    
T  9954825 gtcccttaacttaattgtttgtaccaaattggtcccctaaatataatttgtaccaaattcgtcctctaagttttgctccgttaccagtttcggtccttt 9954923  T

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Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 339 - 399
Target Start/End: Original strand, 24497585 - 24497645
Alignment:
Q  339 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 399  Q
    ||||||| || |||||||  || ||||||||||||||||| | ||||||||||| ||||||    
T  24497585 gcaattttttgtgtaaattcctctgaatttcttatataaacccctataaattgggcaattt 24497645  T

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Target: scaffold0781 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: scaffold0781
Description:

Target: scaffold0781; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 403 - 513
Target Start/End: Complemental strand, 5380 - 5270
Alignment:
Q  403 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatac 502  Q
    |||||||||||| | ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |||||||||||| | ||     
T  5380 cttattcaatcatccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgctttgttat 5281  T
Q  503 tagttttagtc 513  Q
    |||||||||||    
T  5280 tagttttagtc 5270  T

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Target: scaffold0079 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 280 - 399
Target Start/End: Complemental strand, 54695 - 54576
Alignment:
Q  280 gggcggttctatggccaggcgaccccaggcattcgcttggactccggcccaannnnnnngcaatttcttatgtaaatctctatgaatttcttatataaat 379  Q
    ||||||||||| |||| ||||||||| |||||||||  ||| ||||| ||||       ||||||| || |||||||  |||||||||| ||||||||||    
T  54695 gggcggttctaaggcccggcgaccccgggcattcgcccggattccgggccaatttttttgcaattttttgtgtaaattcctatgaattttttatataaat 54596  T
Q  380 ctctataaattggacaattt 399  Q
    | ||||||||||||||||||    
T  54595 ccctataaattggacaattt 54576  T

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Target: scaffold0086 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 339 - 399
Target Start/End: Original strand, 20842 - 20902
Alignment:
Q  339 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 399  Q
    ||||||||||||||||||  || ||||||||||||||||| ||||||||||||||||||||    
T  20842 gcaatttcttatgtaaattcctctgaatttcttatataaagctctataaattggacaattt 20902  T

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Target: scaffold0045 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 339 - 395
Target Start/End: Original strand, 34463 - 34519
Alignment:
Q  339 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggaca 395  Q
    ||||||||||||||||||| || ||||||  ||||||||||||||||||||||||||    
T  34463 gcaatttcttatgtaaatccctctgaattctttatataaatctctataaattggaca 34519  T

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Target: scaffold0034 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 461 - 517
Target Start/End: Original strand, 108055 - 108111
Alignment:
Q  461 ataatttgtaccaatttggtcccgtatgttttgcttcgatactagttttagtccttt 517  Q
    |||||||||| |||||||||||  | ||||||||| |  ||||||||||||||||||    
T  108055 ataatttgtatcaatttggtcctctgtgttttgctccattactagttttagtccttt 108111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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