View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21376_low_5 (Length: 477)
Name: NF21376_low_5
Description: NF21376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21376_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 376; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 1 - 429
Target Start/End: Complemental strand, 3811853 - 3811426
Alignment:
| Q |
1 |
agtggaaagttagtataaatgtaaaaaattacttaagttttcttcaccataatatctctagtctcttgagggacttgaggtagttgtatgtcaagaaagt |
100 |
Q |
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| T |
3811853 |
agtggaaagttagtataaatgtaaaaaattacttaagttttcttcaccataatatctctagtctcttgagggacttgaggtagttgtatgtcaagaaagt |
3811754 |
T |
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| Q |
101 |
agaggagatataagcatgaagtgacgaatcacaatttgtgagctatttttgtcnnnnnnncttatattatggttatgcacttgggctatagcttgataga |
200 |
Q |
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| T |
3811753 |
agaggagatataagcatgaagtgacgaatcacaatttgtgagctatttttgtctttttttcttatattatggttatgcacttgggctatagcttgataga |
3811654 |
T |
|
| Q |
201 |
aattttctctccaacatcttaccatattatccaactgatattggttgaaaatgttcatcaattctaaacaattttattgacaaatattgtaaattataac |
300 |
Q |
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| T |
3811653 |
aattttgtctccaacatcttaccatcttatccaactgttattggttgaaaatgttcatcaattctaaacaattttattgacaaatattgtaaattataac |
3811554 |
T |
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| Q |
301 |
ttcaaattataatcaattctagagccgtctaaaaccaattacactcgagaagattcaatatccaaatcaactcgccctcattcttttcagtacaacttaa |
400 |
Q |
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| T |
3811553 |
ttcaaattataatcaattttagagcggtctaaaaccaattacactcgagaagattcaatatccaaatcaactcgccctcattcttttcagtacaactt-a |
3811455 |
T |
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| Q |
401 |
agttcgaggctagagcaatagaatcgttg |
429 |
Q |
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| T |
3811454 |
agttcgaggctagagcaataaaatcgttg |
3811426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 427 - 465
Target Start/End: Complemental strand, 3811369 - 3811331
Alignment:
| Q |
427 |
ttggtatatagttggtcatcacatagctacataatgtga |
465 |
Q |
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| T |
3811369 |
ttggtatatagttggtcatcacatagctacataatgtga |
3811331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 281 - 321
Target Start/End: Complemental strand, 22271463 - 22271423
Alignment:
| Q |
281 |
caaatattgtaaattataacttcaaattataatcaattcta |
321 |
Q |
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| T |
22271463 |
caaaaattgtaaattataacttcaatttaaaatcaattcta |
22271423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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