View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21377_high_1 (Length: 424)
Name: NF21377_high_1
Description: NF21377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21377_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 1 - 415
Target Start/End: Complemental strand, 39679976 - 39679562
Alignment:
| Q |
1 |
caccagccaaaacagaaactttccatgcctttttaaggtcatgtggtttcttataaggtggtgggccttgttcttgggccaacaaaccttgttcacccca |
100 |
Q |
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| T |
39679976 |
caccagccaaaacagaaactttccatgcctttttaaggtcatgtggtttcttataaggtggtgggccttgttcttgggccaacaaaccttgttcacccca |
39679877 |
T |
|
| Q |
101 |
ccaattttctgatcctgtgggccaccagggaggagaaattcccctctcgagtggaaacctcctctgtggtggcacacaatgttgcattaaagcagaaaga |
200 |
Q |
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| T |
39679876 |
ccaattttctgatcctgtgggccaccagggaggagaaattcccctctcgagtggaaacctcctctgtggtggcacacaatgttgcattaaagcagaaaga |
39679777 |
T |
|
| Q |
201 |
agcgaaccaagagttgaatcttgtaaatcttggaggagatgtatgtaagaatttgggtcagccattatagtattaaaatgttcgtcttctcgaaggagtg |
300 |
Q |
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| T |
39679776 |
agcgaaccaagagttgaatcttgtaaatcttggaggagatgtatgtaagaatttgggtcagccattatagtattaaaatgttcgtcttctcgaaggagtg |
39679677 |
T |
|
| Q |
301 |
gtaagtattttgcaaccgcgagtggcgcactttgatcaaaacggatttgatctttccaccattcgcgtaaactatcagacgaacctgataccggtttacc |
400 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39679676 |
gtaagtattttgcaaccgcgagtggcgcgctttgatcaaaacggatttgatctttccaccattcgcgtaaactatcagacgaacctgataccggtttacc |
39679577 |
T |
|
| Q |
401 |
cttttcagggatgat |
415 |
Q |
| |
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| T |
39679576 |
cttttcagggatgat |
39679562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 4 - 208
Target Start/End: Complemental strand, 38052519 - 38052315
Alignment:
| Q |
4 |
cagccaaaacagaaactttccatgcctttttaaggtcatgtggtttcttataaggtggtgggccttgttcttgggccaacaaaccttgttcaccccacca |
103 |
Q |
| |
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||||||| |||||||||||||| |||||||| | ||||| ||||| ||||||||||||||||| |||| || | ||| |||||||| ||||||||| |
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| T |
38052519 |
cagccaacacagaaactttccaagcctttttcaaatcatgaggttttttataaggtggtgggccatgttgttctgacaaaccaccttgttgaccccacca |
38052420 |
T |
|
| Q |
104 |
attttctgatcctgtgggccaccagggaggagaaattcccctctcgagtggaaacctcctctgtggtggcacacaatgttgcattaaagcagaaagaagc |
203 |
Q |
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| T |
38052419 |
ctgttctgttccattaggccaccatggaggagccaaacctatttcaagagggaatcttctttgtggtggtacacagtgttgcattagagctgaaagaaga |
38052320 |
T |
|
| Q |
204 |
gaacc |
208 |
Q |
| |
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||||| |
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|
| T |
38052319 |
gaacc |
38052315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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