View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21377_high_2 (Length: 350)
Name: NF21377_high_2
Description: NF21377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21377_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 19 - 334
Target Start/End: Complemental strand, 8361158 - 8360849
Alignment:
| Q |
19 |
aatcttatcttgattcattccatgcggcccccactagaacaacataaacaacaattcacatgcttgtgatcttctcaacctgcatagatctgcattaaag |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |
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| T |
8361158 |
aatcttatcttgattcattccatgcggcccccactagaacaacataaacaacaattcacatgcttctgatcttctcaacctgcatagatctgcattgaag |
8361059 |
T |
|
| Q |
119 |
agtttacttgtgagggttggtagaatgaaaagagaatgagtttttgcaaccagatctgtggagttcgaaaacaaccatggaagattttctatacagatct |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8361058 |
agtttacttgtgagggttggtagaatgaaaagagaatgagtttttgcaacca-----gtggagttcgaaaacaaccatggaagattttctatacagatct |
8360964 |
T |
|
| Q |
219 |
actgagattggaattcatcatcactatttcgttttgagcctttaatttattttcttcttgttcaatgtctagttgctcaaaattgttttacgaaaagtac |
318 |
Q |
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| |||||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8360963 |
attgagattggacttcatcatcactatttcgttttgagcctttcattta-tttcttcttgttcaatgtctagttgctcaaaattgttttacgaaaagtac |
8360865 |
T |
|
| Q |
319 |
gtaacattcaattcat |
334 |
Q |
| |
|
|||||||||||||||| |
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| T |
8360864 |
gtaacattcaattcat |
8360849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 18 - 334
Target Start/End: Complemental strand, 38412824 - 38412517
Alignment:
| Q |
18 |
caatcttatcttgattcattccatgcggcccccactagaacaacataaacaacaattcacatgcttgtgatcttctcaacctgcatagatctgcattaaa |
117 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||| | |||| ||||| | |||||| ||||||||||||||||||||| || |
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| T |
38412824 |
caatcttatcctgattcattccatgcggcccccactagaacaaca---------actcacttgcttctaatcttcccaacctgcatagatctgcattgaa |
38412734 |
T |
|
| Q |
118 |
gagtttacttgtgagggttggtagaatgaaaagagaatgagtttttgcaaccagatctgtggagttcgaaaacaaccatggaagattttctatacagatc |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38412733 |
gagtttacttgtgagggttggtagaatgaaaagagaatgagtttttgcagccaaatctgtggagttcgaaaacaaccatggaagattttctatacagatc |
38412634 |
T |
|
| Q |
218 |
tactgagattggaattcatcatcactatttcgttttgagcctttaatttattttcttcttgttcaatgtctagttgctcaaaattgttttacgaaaagta |
317 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38412633 |
tactgagattggacttcatcatcactatttcgttttgagcctttcatttattttcttcttgttcaatgtctagttgctcaaaattgttttacgaaaagta |
38412534 |
T |
|
| Q |
318 |
cgtaacattcaattcat |
334 |
Q |
| |
|
| ||||||||||||||| |
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|
| T |
38412533 |
cataacattcaattcat |
38412517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 18 - 334
Target Start/End: Complemental strand, 26909141 - 26908834
Alignment:
| Q |
18 |
caatcttatcttgattcattccatgcggcccccactagaacaacataaacaacaattcacatgcttgtgatcttctcaacctgcatagatctgcattaaa |
117 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||| | |||| ||||| | |||||| ||||||||||||||||||||| || |
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|
| T |
26909141 |
caatcttatcctgattcattccatgcggcccccactagaacaaca---------actcacttgcttctaatcttcccaacctgcatagatctgcattgaa |
26909051 |
T |
|
| Q |
118 |
gagtttacttgtgagggttggtagaatgaaaagagaatgagtttttgcaaccagatctgtggagttcgaaaacaaccatggaagattttctatacagatc |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26909050 |
gagtttacttgtgagggttggtagaatgaaaagagaatgagtttttgcagccaaatctgtggagttcgaaaacaaccatggaagattttctatacagatc |
26908951 |
T |
|
| Q |
218 |
tactgagattggaattcatcatcactatttcgttttgagcctttaatttattttcttcttgttcaatgtctagttgctcaaaattgttttacgaaaagta |
317 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26908950 |
tactgagattggacttcatcatcactatttcgttttgagcctttcatttattttcttcttgttcaatgtctagttgctcaaaattgttttacgaaaagta |
26908851 |
T |
|
| Q |
318 |
cgtaacattcaattcat |
334 |
Q |
| |
|
| ||||||||||||||| |
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|
| T |
26908850 |
cataacattcaattcat |
26908834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 18 - 334
Target Start/End: Original strand, 34611822 - 34612129
Alignment:
| Q |
18 |
caatcttatcttgattcattccatgcggcccccactagaacaacataaacaacaattcacatgcttgtgatcttctcaacctgcatagatctgcattaaa |
117 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||| | |||| ||||| | |||||| ||||||||||||||||||||| || |
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|
| T |
34611822 |
caatcttatcctgattcattccatgcggcccccactagaacaaca---------actcacttgcttctaatcttcccaacctgcatagatctgcattgaa |
34611912 |
T |
|
| Q |
118 |
gagtttacttgtgagggttggtagaatgaaaagagaatgagtttttgcaaccagatctgtggagttcgaaaacaaccatggaagattttctatacagatc |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34611913 |
gagtttacttgtgagggttggtagaatgaaaagagaatgagtttttgcagccaaatctgtggagttcgaaaacaaccatggaagattttctatacagatc |
34612012 |
T |
|
| Q |
218 |
tactgagattggaattcatcatcactatttcgttttgagcctttaatttattttcttcttgttcaatgtctagttgctcaaaattgttttacgaaaagta |
317 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34612013 |
tactgagattggacttcatcatcactatttcgttttgagcctttcatttattttcttcttgttcaatgtctagttgctcaaaattgttttacgaaaagta |
34612112 |
T |
|
| Q |
318 |
cgtaacattcaattcat |
334 |
Q |
| |
|
| ||||||||||||||| |
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|
| T |
34612113 |
cataacattcaattcat |
34612129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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